Gene

KWMTBOMO05572  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006588

Annotation

PREDICTED:_pescadillo_homolog_[Bombyx_mori]

Location

Bomo_Chr10(-):5271106-5274451      View in EpiBrowser

Full name

Pescadillo homolog      

Location in the cell

Nuclear   Reliability : 3.55

CDS

ATGGTGTCCAAAAAGAAGAAGAAGTATTCTTCCGGAGAAGGAGCTCAGTTTATGACCAGAAAAGCAGCGCTTAAGAAACTACAACTATCCTTGAAAGATTTCAGACGTATTTGTATTTTGAAAGGAATATACCCCCGAGAACCTAGAAACCGAAAGAGGGCTCAAAAAGGTGCAGGCGGAATCAAAACACTTTATCACACTAAAGATATAAAATTTTTACTACATGAGCCAATAATATGGAAACTGAGGGAACTAAAGGTTTATCAACAAAAAATTCGTCGTGCAAGAGCACAGCGAGAATATGGCAAGATGAGAAAGTTTTTGCGGGACTATCCAGAAATAAACATTGATCACATAGTAAAGGAAAGATACCCCACGTTTGTTGACGCTTTGCGAGATTTGGACGATTGTCTCACATTGTGCTTCCTATTCAGTACTTTCCCATCATTGAAAAAAGTTCCAAGAGACCAATCATTCTTGTGCAGAAGACTGACAGTTGAATTCATGCATGCAGTAATTGCTGCTAAGGCTCTACGTAAAGTGTTTGTATCGGTTAAGGGATTCTATTATCAAGTTGAATTTGAAGGACAAACAATAACATGGATTGTTCCACATCATTTCTCATTCCAGCCACAAAGCAAAGATGAAGTAGACTTCAAAATTATGGCGACATTTGTGGAATTTTACACTATGATGCTTGGTTTTGTGAATTTCAAGCTGTATCACTCACTGAATTTAGTTTATCCGCCTAAACTCCCTATTGGTTTCTCTTCTGAAAAAGACAAAGACCTTATTGACGAACAATCATATGTGTCAGAACGTATAGCTGCTATGAATATTTCACCTGCAAAAATTGAAGGATCAAATGAAGTTGAAGAGTTACCAGAAATTGACATATTTCCCACAGAAGATAATGATCCCCAAAAACTAGAAGAAGCCAAACTTGAGGCAGAAAAAATTAAAAAGCTAAAAACATTGTTCAAAGGGTTAAAGTTTTACATAAATAGAGAAGTACCCAGGGAACCCTTAGTATTCATAATTCGCTGCTTTGGTGGAGAGTGCTCATGGGATAAAGATCACTTTGTAGGTGCAACATTTGATGAGACAGATGAAACTATTGCCTACCAAATAGTAGACAGACCAAGTATGGATAAACAATACTTATCGCGATACTACATCCAGCCGCAATGGGTTTTTGACAGTGTTAATACAAGAACTTTGTTGCCAATCAATAAGTACTTGATTGGTGCTATTCTTCCGCCTCACTTGTCACCATTTGTTGACACTATAAAAGATCAAGTATACATACCACCAGAAGAAAGAGAGCTTAACGATCCAAACTTCAAACCACTCAATGCAGATTCTTCTGGAAGTGAAATAGAAGAAGCCAGTGATGAAGACAAGGAGGAGCAAAATGAGCCCGACTCTGAAGATAGTGATGCTGAAAGAGCTATTACTAAGCAATATCAGCAGGAGGTTGATGAAGATTCATCTCAAGATGAAGAAGAAAATGATGATGATGATTTGGACCCTGAGAAAAAGAAACTGGCTAAAGAGAAGAAAAAATCAATGAGGGTAACGACAGGTGTAACCCATAAAGAACATCCTTATCAAAAAGAAATAGAAGACAAACAGGCATTCCGGTTACGCGAGAAGCTAGTACGAAAGAAGCACCGCAATCTGTATAAAAGTATGAAAGCAGGTCAAGAAAAACGTAAGAAGGAAATATGGCTGCTTAGGAAAAAACGTCGCCTTCACGACGAGAAGATCAAAGATGAAAAGAAGGCAGAAAAACGGAAACAAAAAATGCAAGCACTAGAAGCTACTTCTATTTGA

Protein

MVSKKKKKYSSGEGAQFMTRKAALKKLQLSLKDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVDALRDLDDCLTLCFLFSTFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRKVFVSVKGFYYQVEFEGQTITWIVPHHFSFQPQSKDEVDFKIMATFVEFYTMMLGFVNFKLYHSLNLVYPPKLPIGFSSEKDKDLIDEQSYVSERIAAMNISPAKIEGSNEVEELPEIDIFPTEDNDPQKLEEAKLEAEKIKKLKTLFKGLKFYINREVPREPLVFIIRCFGGECSWDKDHFVGATFDETDETIAYQIVDRPSMDKQYLSRYYIQPQWVFDSVNTRTLLPINKYLIGAILPPHLSPFVDTIKDQVYIPPEERELNDPNFKPLNADSSGSEIEEASDEDKEEQNEPDSEDSDAERAITKQYQQEVDEDSSQDEEENDDDDLDPEKKKLAKEKKKSMRVTTGVTHKEHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKRRLHDEKIKDEKKAEKRKQKMQALEATSI

Description

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Similarity

Belongs to the pescadillo family.

Keywords

Coiled coil   Complete proteome   Nucleus   Phosphoprotein   Reference proteome   Ribosome biogenesis   rRNA processing  

Feature

chain  Pescadillo homolog

Uniprot

A0A0L7L1I0   A0A2H1VIK2   A0A194PEC6   A0A194QMM8   A0A1C9EGK3   S4PC29   + More
A0A2A4K286   A0A1E1WI71   A0A088AVL5   A0A151X5Z6   A0A0T6B925   A0A1W4XTQ0   A0A2J7QM86   F4WBN4   A0A026WJX8   A0A151IK59   A0A195FSW4   E2AA80   A0A195DIG0   A0A232F6M3   A0A195BE28   E9IKA2   K7IVJ0   A0A158NRH6   E0VTT0   E2B9B0   A0A1B6ISY3   A0A1B6L8V9   A0A1Y1K4C4   A0A067RFS7   A0A1B6ERC9   A0A0L7RJ30   A0A069DVJ0   A0A2J7QMB3   A0A2R7WCE2   A0A224XMF3   T1HBC1   A0A0V0G856   A0A1B6CUK3   A0A0K8TSB2   A0A1I8N486   B4KID9   R4G8X6   A0A2A3EPP0   A0A0P4VX30   A0A336LZN7   A0A0L0BSN8   A0A0A9VY68   A0A146M1T3   A0A336MT97   A0A1A9W026   A0A336M836   A0A0K8TCD2   A0A1B0BJH2   A0A1A9XGV4   A0A1I8Q411   A0A1A9V9M0   B4JZG8   A0A1B0FF87   A0A1B0A4Z9   T1PDG3   A0A1B0D4Y9   B4LQD0   A0A0J9QZE3   B4Q865   Q9VL96   B3N8H0   B4NY70   B4HW93   A0A0A1WLE1   B3MUX9   A0A1W4VXT5   A0A1L8DH33   A0A1L8DH90   A0A1B0CSC4   B4NE56   A0A0K8U1C5   A0A0K8V8V9   A0A0K8VG81   A0A3B0JU91   B4G7Y6   Q29NB4   A0A1Q3EY44   A0A0M3QTK5   Q0IE95   A0A2K7P6D3   B0WD26   A0A023EX98   A0A2S2PXW3   A0A023EUE8   A0A182GLE9   A0A2H8TTR9   A0A2M4A3I0   A0A2M4A3F8   A0A034WTX8   A0A0K8W4X5   A0A2M4A4A3   A0A182PUX3   A0A182FGX6  

Pubmed

26227816    26354079    23622113    21719571    24508170    30249741    + More
20798317    28648823    21282665    20075255    21347285    20566863    28004739    24845553    26334808    26369729    25315136    17994087    27129103    26108605    25401762    26823975    22936249    10731132    12537572    12537569    18327897    25830018    15632085    17510324    24945155    26483478    25348373   

EMBL

JTDY01003554    KOB69347.1    ODYU01002558    SOQ40232.1    KQ459606    KPI91622.1    + More
KQ461198    KPJ06215.1    KX778610    AON96624.1    GAIX01004341    JAA88219.1    NWSH01000287    PCG77752.1    GDQN01004354    JAT86700.1    KQ982498    KYQ55688.1    LJIG01009079    KRT83798.1    NEVH01013214    PNF29714.1    GL888066    EGI68312.1    KK107167    QOIP01000010    EZA56315.1    RLU18185.1    KQ977255    KYN04654.1    KQ981280    KYN43392.1    GL438030    EFN69660.1    KQ980824    KYN12621.1    NNAY01000829    OXU26295.1    KQ976511    KYM82452.1    GL763924    EFZ19078.1    ADTU01024041    DS235773    EEB16786.1    GL446479    EFN87716.1    GECU01017665    JAS90041.1    GEBQ01019828    JAT20149.1    GEZM01093119    JAV56339.1    KK852530    KDR21903.1    GECZ01029245    JAS40524.1    KQ414582    KOC70850.1    GBGD01000989    JAC87900.1    PNF29712.1    KK854612    PTY17353.1    GFTR01007237    JAW09189.1    ACPB03005609    GECL01002005    JAP04119.1    GEDC01020079    JAS17219.1    GDAI01000783    JAI16820.1    CH933807    GAHY01000207    JAA77303.1    KZ288198    PBC33698.1    GDKW01001367    JAI55228.1    UFQS01000238    UFQT01000238    SSX01832.1    SSX22209.1    JRES01001418    KNC23095.1    GBHO01042482    GDHC01012702    GDHC01001122    JAG01122.1    JAQ05927.1    JAQ17507.1    GDHC01005813    JAQ12816.1    UFQT01001849    SSX31993.1    SSX01831.1    SSX22208.1    GBRD01002765    JAG63056.1    JXJN01015395    CH916379    CCAG010014241    KA646165    AFP60794.1    AJVK01011666    AJVK01011667    AJVK01011668    CH940649    CM002910    KMY89306.1    CM000361    AE014134    AY069545    CH954177    CM000157    CH480818    GBXI01014987    JAC99304.1    CH902624    GFDF01008328    JAV05756.1    GFDF01008327    JAV05757.1    AJWK01025894    CH964239    GDHF01031765    JAI20549.1    GDHF01016940    JAI35374.1    GDHF01014466    JAI37848.1    OUUW01000010    SPP85675.1    CH479180    CH379060    GFDL01014917    JAV20128.1    CP012523    ALC39073.1    CH477955    DS231893    GAPW01000579    JAC13019.1    GGMS01001030    MBY70233.1    GAPW01001031    JAC12567.1    JXUM01072014    KQ562697    KXJ75309.1    GFXV01005840    MBW17645.1    GGFK01001959    MBW35280.1    GGFK01001964    MBW35285.1    GAKP01001749    JAC57203.1    GDHF01006143    JAI46171.1    GGFK01002157    MBW35478.1   

Proteomes

UP000037510    UP000053268    UP000053240    UP000218220    UP000005203    UP000075809    + More
UP000192223    UP000235965    UP000007755    UP000053097    UP000279307    UP000078542    UP000078541    UP000000311    UP000078492    UP000215335    UP000078540    UP000002358    UP000005205    UP000009046    UP000008237    UP000027135    UP000053825    UP000015103    UP000095301    UP000009192    UP000242457    UP000037069    UP000091820    UP000092460    UP000092443    UP000095300    UP000078200    UP000001070    UP000092444    UP000092445    UP000092462    UP000008792    UP000000304    UP000000803    UP000008711    UP000002282    UP000001292    UP000007801    UP000192221    UP000092461    UP000007798    UP000268350    UP000008744    UP000001819    UP000092553    UP000008820    UP000002320    UP000069940    UP000249989    UP000075885    UP000069272   

PRIDE

Q9VL96    B4G7Y6    Q0IE95    B0WD26   

Pfam

PF16589   BRCT_2        + More
PF06732   Pescadillo_N

Interpro

IPR001357   BRCT_dom        + More
IPR036420   BRCT_dom_sf       
IPR010613   PES       

SUPFAM

SSF52113   SSF52113       

Gene 3D

3.40.50.10190    

CDD

cd00027  BRCT

ProteinModelPortal

A0A0L7L1I0   A0A2H1VIK2   A0A194PEC6   A0A194QMM8   A0A1C9EGK3   S4PC29   + More
A0A2A4K286   A0A1E1WI71   A0A088AVL5   A0A151X5Z6   A0A0T6B925   A0A1W4XTQ0   A0A2J7QM86   F4WBN4   A0A026WJX8   A0A151IK59   A0A195FSW4   E2AA80   A0A195DIG0   A0A232F6M3   A0A195BE28   E9IKA2   K7IVJ0   A0A158NRH6   E0VTT0   E2B9B0   A0A1B6ISY3   A0A1B6L8V9   A0A1Y1K4C4   A0A067RFS7   A0A1B6ERC9   A0A0L7RJ30   A0A069DVJ0   A0A2J7QMB3   A0A2R7WCE2   A0A224XMF3   T1HBC1   A0A0V0G856   A0A1B6CUK3   A0A0K8TSB2   A0A1I8N486   B4KID9   R4G8X6   A0A2A3EPP0   A0A0P4VX30   A0A336LZN7   A0A0L0BSN8   A0A0A9VY68   A0A146M1T3   A0A336MT97   A0A1A9W026   A0A336M836   A0A0K8TCD2   A0A1B0BJH2   A0A1A9XGV4   A0A1I8Q411   A0A1A9V9M0   B4JZG8   A0A1B0FF87   A0A1B0A4Z9   T1PDG3   A0A1B0D4Y9   B4LQD0   A0A0J9QZE3   B4Q865   Q9VL96   B3N8H0   B4NY70   B4HW93   A0A0A1WLE1   B3MUX9   A0A1W4VXT5   A0A1L8DH33   A0A1L8DH90   A0A1B0CSC4   B4NE56   A0A0K8U1C5   A0A0K8V8V9   A0A0K8VG81   A0A3B0JU91   B4G7Y6   Q29NB4   A0A1Q3EY44   A0A0M3QTK5   Q0IE95   A0A2K7P6D3   B0WD26   A0A023EX98   A0A2S2PXW3   A0A023EUE8   A0A182GLE9   A0A2H8TTR9   A0A2M4A3I0   A0A2M4A3F8   A0A034WTX8   A0A0K8W4X5   A0A2M4A4A3   A0A182PUX3   A0A182FGX6  

PDB

6FT6     E-value=5.53733e-66,     Score=639

KEGG

101739327    K14843 pescadillo | (RefSeq) pescadillo homolog

GO

GO:0005730   GO:0030687   GO:0000466   GO:0005654   GO:0000463   GO:0043021   GO:0006364   GO:0016021   GO:0042254   GO:0003677   GO:0003899   GO:0006913   GO:0007165   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

PANTHER

PTHR12221  

Subcellular location

Nucleus  
Nucleolus  
Nucleoplasm  

Length:

611

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.99221

Exp number, first 60 AAs:

0.00012

Total prob of N-in:

0.09868

outside

1  -  611

 

 

Pi

227.02866

Theta

193.937621

Tajima's D

0.509619

CLR

0.001006

CSRT

0.513674316284186

Interpretation

Uncertain