Gene

KWMTBOMO05569

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr10(+):5246902-5247526      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.654 Nuclear   Reliability : 1.218

CDS

ATGCACCCCGAGAGTGAGCTGCGGGCGCGGAGGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MHPESELRARRAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Cofactor

FAD

Similarity

Belongs to the FBPase class 1 family.
Belongs to the GMC oxidoreductase family.

Uniprot

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A0J7K2M2   A0A3L8D4Y9   A0A2W1BTM2   + More
A0A0J7KM11   A0A2W1B333   A0A3L8DDS1   A0A2W1C3J5   A0A2W1BDU5   A0A0J7MZM4   A0A2W1BSQ5   Q8MY27   A0A0J7N1D9   Q8MY31   Q8MY33   A0A0J7KJB9   Q8MY35   A0A2W1BXC9   A0A0J7KIY3   A0A0J7KCQ3   A0A3S2P7E0   A0A0J7KS67   A0A2H1W776   A0A3S2LNH8   A0A2H1WNZ5   A0A2W1BY04   A0A0J7KKS4   A0A3S2NGT9   A0A2H1VTA2   A0A0J7L0U0   A0A0L7QYH7   A0A0J7N7H9   A0A3S2PJK0   A0A2H1VYR8   A0A2H1WEH8   A0A0J7KIQ5   A0A2H1W4U7   A0A0J7N7S8   A0A0J7JXN3   A0A0J7KIY5   A0A0J7KQK3   A0A0J7JZF7   J9KZ24   A0A0J7JZ13   A0A0J7KM81   A0A3L8D4Z4   A0A0J7KJH4   A0A3L8DXT9   A0A0J7KT62   A0A3L8D2G3   A0A3L8DDV9   A0A0J7KIM6   A0A2S2P557   A0A0J7KQU9   A0A0J7KJG6   A0A0J7KP92  

Pubmed

12644555    30249741    28756777   

EMBL

AB090825    BAC57926.1    AB126050    BAD86650.1    LBMM01009501    KMQ88083.1    + More
LBMM01016102    KMQ84557.1    QOIP01000014    RLU15083.1    KZ149922    PZC77701.1    LBMM01005707    KMQ91279.1    KZ150386    PZC71062.1    QOIP01000009    RLU18544.1    KZ149896    PZC78733.1    KZ150308    PZC71477.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    LBMM01012027    KMQ86470.1    AB078931    BAC06456.1    AB078930    BAC06454.1    LBMM01006538    KMQ90523.1    AB078929    BAC06452.1    KZ149918    PZC77857.1    LBMM01006909    KMQ90209.1    LBMM01009494    KMQ88097.1    RSAL01000006    RVE54258.1    LBMM01003679    KMQ93242.1    ODYU01006757    SOQ48893.1    RSAL01003504    RVE40273.1    ODYU01009945    SOQ54696.1    PZC77700.1    LBMM01006022    KMQ91008.1    RSAL01000109    RVE47213.1    ODYU01004308    SOQ44039.1    LBMM01001564    KMQ96079.1    KQ414692    KOC63606.1    LBMM01008861    KMQ88580.1    RSAL01000014    RVE53298.1    ODYU01005282    SOQ45985.1    ODYU01008140    SOQ51495.1    LBMM01006996    KMQ90129.1    ODYU01006342    SOQ48109.1    LBMM01008682    KMQ88705.1    LBMM01024024    KMQ82631.1    LBMM01006954    KMQ90166.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    ABLF02006132    LBMM01019839    KMQ83438.1    LBMM01005634    KMQ91349.1    QOIP01000013    RLU15211.1    LBMM01006657    KMQ90417.1    QOIP01000003    RLU25053.1    LBMM01003452    KMQ93523.1    QOIP01000031    RLU14697.1    QOIP01000010    RLU18098.1    LBMM01007036    KMQ90099.1    GGMR01011974    MBY24593.1    LBMM01004152    KMQ92762.1    LBMM01006671    KMQ90407.1    LBMM01004697    KMQ92167.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000053825    UP000007819   

PRIDE

Q868Q4    Q5KTM7   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF00316   FBPase
PF01421   Reprolysin
PF00732   GMC_oxred_N

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR033391   FBPase_N       
IPR000146   FBPase_class-1       
IPR028343   FBPtase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR011990   TPR-like_helical_dom_sf       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF48452   SSF48452       
SSF51905   SSF51905       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10     1.25.40.10     3.50.50.60    

CDD

cd00354  FBPase

ProteinModelPortal

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A0J7K2M2   A0A3L8D4Y9   A0A2W1BTM2   + More
A0A0J7KM11   A0A2W1B333   A0A3L8DDS1   A0A2W1C3J5   A0A2W1BDU5   A0A0J7MZM4   A0A2W1BSQ5   Q8MY27   A0A0J7N1D9   Q8MY31   Q8MY33   A0A0J7KJB9   Q8MY35   A0A2W1BXC9   A0A0J7KIY3   A0A0J7KCQ3   A0A3S2P7E0   A0A0J7KS67   A0A2H1W776   A0A3S2LNH8   A0A2H1WNZ5   A0A2W1BY04   A0A0J7KKS4   A0A3S2NGT9   A0A2H1VTA2   A0A0J7L0U0   A0A0L7QYH7   A0A0J7N7H9   A0A3S2PJK0   A0A2H1VYR8   A0A2H1WEH8   A0A0J7KIQ5   A0A2H1W4U7   A0A0J7N7S8   A0A0J7JXN3   A0A0J7KIY5   A0A0J7KQK3   A0A0J7JZF7   J9KZ24   A0A0J7JZ13   A0A0J7KM81   A0A3L8D4Z4   A0A0J7KJH4   A0A3L8DXT9   A0A0J7KT62   A0A3L8D2G3   A0A3L8DDV9   A0A0J7KIM6   A0A2S2P557   A0A0J7KQU9   A0A0J7KJG6   A0A0J7KP92  

KEGG

100141455    no KO assigned | (RefSeq) Hig, Bmhig; hikaru genki

GO

GO:0003964   GO:0016746   GO:0016021   GO:0005975   GO:0016787   GO:0050660   GO:0016614   GO:0008270   GO:0003676  

PANTHER

PTHR11556  

Length:

182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01257

Exp number, first 60 AAs:

0.00175

Total prob of N-in:

0.10130

outside

1  -  182

 

 

Pi

162.586419

Theta

117.529577

Tajima's D

1.559197

CLR

68.212592

CSRT

0.800909954502275

Interpretation

Uncertain