Gene

KWMTBOMO05567

Pre Gene Modal

BGIBMGA006752

Annotation

PREDICTED:_DNA-directed_RNA_polymerase_II_subunit_RPB11-a_[Amyelois_transitella]

Location

Bomo_Chr10(+):5206642-5208324      View in EpiBrowser

Full name

DNA-directed RNA polymerase II subunit RPB11      

Alternative Name

DNA-directed RNA polymerase II 13.3 kDa polypeptide
DNA-directed RNA polymerase II subunit J

Location in the cell

Cytoplasmic   Reliability : 1.302 Nuclear   Reliability : 1.776

CDS

ATGAATGCACCGCCGACATTCGAATCGTTCTTGTTGTATGACGGTGAAAAAAAGGTTCAAAAAGAAGAAGATACAAAAGTTACAAATGCAGCAATATTTACAGTTAACAAAGAGGACCACACACTTGGTAACATGATCAGACATCAACTGCTGAAGGACCCAAAAGTCCTCTTTGCCGGTTACAAGATACCGCATCCATTGGAACATAAATTTGTACTCAGAATTCAAACAACATCAGACTATACACCACAGGAAGCGTTCATGAATGCCATTACAGACTTAACATCTGAACTCTCATTATTTGAAGAAAGATTTAAAGAAGCTATAAAGGAGAAAAAGGAAGGCTTAGATTAA

Protein

MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).

Subunit

Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.

Similarity

Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.

Keywords

Complete proteome   DNA-directed RNA polymerase   Nucleus   Reference proteome   Transcription  

Feature

chain  DNA-directed RNA polymerase II subunit RPB11

Uniprot

H9JB57   A0A2A4K1V2   A0A3S2TJP5   A0A2H1WXU7   S4P4A9   A0A1C9EGK0   + More
I4DL18   A0A1E1WHX4   A0A212ENB1   A0A1Y1K1L3   A0A154PN27   D6X2Z3   A0A0T6B1S1   A0A1W4XIJ2   A0A0L7RJD8   A0A2A3EJG1   V9IJZ0   A0A0M8ZSA0   A0A088AIZ5   E2BHU1   A0A310SJY8   A0A026WC03   A0A151I7V2   A0A0J7L0Z0   A0A158P1X1   E1ZZM2   A0A0K8TS73   W8C720   A0A232ER77   K7IQ59   A0A0K8U1L1   A0A0A1XJL9   E0V9G7   A0A1W4ULL6   B4MDE7   B4KFR9   G2J5W1   B4P8S6   A0A0M5J214   B3MMI8   B4N1B4   B4JD16   B3NLD6   B4Q7X4   Q9VJE4   A0A1B6LX86   A0A1B6G494   A0A1B6HGX6   A0A034WRV9   U5EXK3   A0A3B0JZ21   Q29MR4   B4G8W2   A0A1I8Q2V4   A0A2J7QMC7   Q16IF1   A0A023EDA8   A0A067RDQ4   G2J5V6   A0A1I8MI20   A0A0L0CRT7   A0A1Q3F7N4   B0WDB4   A0A2H8TUK1   A0A2S2PBZ3   C4WRJ5   J3JVM1   A0A2S2Q3U4   A0A1J1J1D9   A0A1L8EHE0   A0A1B0FKV8   A0A1A9XE70   A0A1A9UXA7   A0A1B0ATL4   A0A1A9ZN81   A0A2P8XXP4   A0A1L8DH28   A0A1B0CAH4   A0A2M3ZB86   A0A2M4AT06   W5J6V9   A0A182F4N8   A0A1B0GP31   A0A182Y9V0   A0A182PAK9   A0A182LS41   A0A182SGL5   A0A182Q3R1   A0A182V1A7   A0A182NF71   A0A182TS52   A0A182JB58   A0A182KUC7   A0A182XKV0   A0A182RG64   A0A182I593   Q7PVQ9   A0A1B6D922   A0A182WH93   Q8IH32  

Pubmed

19121390    23622113    22651552    26354079    22118469    28004739    + More
18362917    19820115    20798317    24508170    30249741    21347285    26369729    24495485    28648823    20075255    25830018    20566863    17994087    17550304    22936249    10731132    12537572    25348373    15632085    17510324    24945155    26483478    24845553    25315136    26108605    22516182    29403074    20920257    23761445    25244985    20966253    12364791   

EMBL

BABH01008631    NWSH01000287    PCG77743.1    RSAL01000092    RVE47983.1    ODYU01011890    + More
SOQ57891.1    GAIX01006059    JAA86501.1    KX778610    AON96621.1    AK401986    KQ459606    BAM18608.1    KPI91627.1    GDQN01004460    JAT86594.1    AGBW02013697    OWR42947.1    GEZM01095790    GEZM01095789    JAV55349.1    KQ434998    KZC13259.1    KQ971372    EFA10296.1    LJIG01016194    KRT81334.1    KQ414582    KOC70908.1    KZ288226    PBC31905.1    JR051230    AEY61458.1    KQ435922    KOX68499.1    GL448324    EFN84774.1    KQ766110    OAD53742.1    KK107293    QOIP01000005    EZA53171.1    RLU22388.1    KQ978397    KYM94214.1    LBMM01001527    KMQ96139.1    ADTU01006906    GL435444    EFN73365.1    GDAI01000823    JAI16780.1    GAMC01003894    GAMC01003892    JAC02662.1    NNAY01002681    OXU20786.1    GDHF01031717    JAI20597.1    GBXI01003150    JAD11142.1    DS234993    EEB10023.1    CH940661    EDW71208.1    CH933807    EDW11034.1    BT128818    AEM72514.1    CM000158    EDW90184.1    CP012523    ALC40086.1    CH902620    EDV30934.1    CH963920    EDW78124.1    CH916368    EDW04260.1    CH954179    EDV54852.1    CM000361    CM002910    EDX05307.1    KMY90694.1    AE014134    GEBQ01011669    JAT28308.1    GECZ01012522    JAS57247.1    GECU01033790    JAS73916.1    GAKP01000656    JAC58296.1    GANO01000912    JAB58959.1    OUUW01000004    SPP78929.1    CH379060    EAL33630.1    CH479180    EDW28792.1    NEVH01013214    PNF29718.1    CH478083    EAT34037.1    JXUM01242296    GAPW01006170    KQ635447    JAC07428.1    KXJ62468.1    KK852530    KDR21907.1    BT128813    AEM72509.1    JRES01000096    KNC34144.1    GFDL01011547    JAV23498.1    DS231895    EDS44349.1    GFXV01006101    MBW17906.1    GGMR01014099    MBY26718.1    ABLF02023179    AK339799    BAH70515.1    BT127289    AEE62251.1    GGMS01003210    MBY72413.1    CVRI01000066    CRL06215.1    GFDG01000780    JAV18019.1    CCAG010015819    JXJN01003390    PYGN01001189    PSN36780.1    GFDF01008397    JAV05687.1    AJWK01003790    GGFM01005038    MBW25789.1    GGFK01010576    MBW43897.1    ADMH02001962    ETN60192.1    AJVK01014940    AXCM01010707    AXCN02000825    AXCP01000069    APCN01003837    AAAB01008984    GEDC01015110    JAS22188.1    BT001454    AAN71209.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000076502    + More
UP000007266    UP000192223    UP000053825    UP000242457    UP000053105    UP000005203    UP000008237    UP000053097    UP000279307    UP000078542    UP000036403    UP000005205    UP000000311    UP000215335    UP000002358    UP000009046    UP000192221    UP000008792    UP000009192    UP000002282    UP000092553    UP000007801    UP000007798    UP000001070    UP000008711    UP000000304    UP000000803    UP000268350    UP000001819    UP000008744    UP000095300    UP000235965    UP000008820    UP000069940    UP000249989    UP000027135    UP000095301    UP000037069    UP000002320    UP000007819    UP000183832    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000245037    UP000092461    UP000000673    UP000069272    UP000092462    UP000076408    UP000075885    UP000075883    UP000075901    UP000075886    UP000075903    UP000075884    UP000075902    UP000075880    UP000075882    UP000076407    UP000075900    UP000075840    UP000007062    UP000075920   

PRIDE

H9JB57    Q9VJE4    Q7PVQ9    Q8IH32   

Pfam

PF13656   RNA_pol_L_2

Interpro

IPR008193   RNA_pol_Rpb11_13-16kDa_CS        + More
IPR009025   RBP11-like_dimer       
IPR037685   RBP11       
IPR036603   RBP11-like       

SUPFAM

SSF55257   SSF55257       

Gene 3D

3.30.1360.10    

CDD

cd06926  RNAP_II_RPB11

ProteinModelPortal

H9JB57   A0A2A4K1V2   A0A3S2TJP5   A0A2H1WXU7   S4P4A9   A0A1C9EGK0   + More
I4DL18   A0A1E1WHX4   A0A212ENB1   A0A1Y1K1L3   A0A154PN27   D6X2Z3   A0A0T6B1S1   A0A1W4XIJ2   A0A0L7RJD8   A0A2A3EJG1   V9IJZ0   A0A0M8ZSA0   A0A088AIZ5   E2BHU1   A0A310SJY8   A0A026WC03   A0A151I7V2   A0A0J7L0Z0   A0A158P1X1   E1ZZM2   A0A0K8TS73   W8C720   A0A232ER77   K7IQ59   A0A0K8U1L1   A0A0A1XJL9   E0V9G7   A0A1W4ULL6   B4MDE7   B4KFR9   G2J5W1   B4P8S6   A0A0M5J214   B3MMI8   B4N1B4   B4JD16   B3NLD6   B4Q7X4   Q9VJE4   A0A1B6LX86   A0A1B6G494   A0A1B6HGX6   A0A034WRV9   U5EXK3   A0A3B0JZ21   Q29MR4   B4G8W2   A0A1I8Q2V4   A0A2J7QMC7   Q16IF1   A0A023EDA8   A0A067RDQ4   G2J5V6   A0A1I8MI20   A0A0L0CRT7   A0A1Q3F7N4   B0WDB4   A0A2H8TUK1   A0A2S2PBZ3   C4WRJ5   J3JVM1   A0A2S2Q3U4   A0A1J1J1D9   A0A1L8EHE0   A0A1B0FKV8   A0A1A9XE70   A0A1A9UXA7   A0A1B0ATL4   A0A1A9ZN81   A0A2P8XXP4   A0A1L8DH28   A0A1B0CAH4   A0A2M3ZB86   A0A2M4AT06   W5J6V9   A0A182F4N8   A0A1B0GP31   A0A182Y9V0   A0A182PAK9   A0A182LS41   A0A182SGL5   A0A182Q3R1   A0A182V1A7   A0A182NF71   A0A182TS52   A0A182JB58   A0A182KUC7   A0A182XKV0   A0A182RG64   A0A182I593   Q7PVQ9   A0A1B6D922   A0A182WH93   Q8IH32  

PDB

6O9L     E-value=1.00117e-43,     Score=438

KEGG

101737649    K03008 DNA-directed RNA polymerase II subunit RPB11 | (RefSeq) DNA-directed RNA polymerase II subuni

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0046983   GO:0003677   GO:0005665   GO:0001055   GO:0003899   GO:0006366   GO:0006351   GO:0006913   GO:0007165   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

Subcellular location

Nucleus  

Length:

117

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05027

outside

1  -  117

 

 

Pi

57.654488

Theta

172.065036

Tajima's D

-0.448978

CLR

0.072055

CSRT

0.252987350632468

Interpretation

Uncertain