Gene

KWMTBOMO05564  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006749

Annotation

elongation_factor_Tu_[Bombyx_mori]

Location

Bomo_Chr10(+):5135092-5138594      View in EpiBrowser

Full name

Elongation factor Tu      

Location in the cell

Cytoplasmic   Reliability : 2.25 Mitochondrial   Reliability : 2.138

CDS

ATGGCTTCAATAACATTTGTGAAAAGTTTGGTTAGTCCAGCTGTGAAATTAGTTCTGAAGCAAAGCCAGTGTGCAAATGTACGAAACACAACAGTCCTGTCAGGATTGACTCCATTAAGTATAATACTCAAGAGACATTATGCAGAAAAACAAATCTTTGAACGTACAAAGCCCCATTGCAATGTTGGCACAATCGGACATGTTGATCACGGGAAGACTACACTAACAGCAGCAATAACTAAGGTATTATCTGATCTCAATCTGGCACAGAAAAAAGGTTATGCAGATATTGACAATGCCCCTGAGGAGAAGGCTCGAGGTATCACTATTAATGTGGCTCATGTCGAATACCAAACCGAACAGAGGCATTATGGACACACTGACTGCCCAGGTCATGCTGACTACATTAAGAACATGATTACAGGCACAGCACAAATGGATGGTGCTATATTAGTAGTAGCTGCAACTGATGGTGTAATGCCACAAACACGCGAACATTTACTACTTGCCAAACAGATTGGTATTCAACATGTGGTGGTGTTCATAAACAAAGTGGATGCCGCTGATGAGGAAATGGTAGAACTGGTTGAGATGGAGATCAGAGAGTTGATGACTGAGATGGGATATGATGGTGACAAGATACCTGTTATTAAAGGTTCTGCTCTCTGTGCTCTTGAAGGCAAAAGTCCTGAAATAGGGGCTGATGCTATCACTAAACTTCTTAAAGAAGTGGACACATTCATTCCAACACCTATCCGAGAGCTCGAAAAACCTTTCCTGATGCCAGTTGAGTCTGTTCACTCAATTCCTGGACGAGGAACTGTCATTACAGGCCGTTTATACAGAGGTGTCTTGAAGAAGGGTACTGATTGTGAAATTGTTGGTCATGGTAAAACAATGAAAACAACCGTAACCGGAGTTGAAATGTTCCACAAAACCTTGGAGGAAGCACAAGCCGGAGATCAACTTGGAGCTCTTGTGCGTTCCATCAAAAGGGAACAAATCAAACGCGGTATGGTCATGGCGAAGCCCGGTACTGCTAAAGCCCATGACAACTTGGAAGCCGCTGTATACATACTTAGCAAGGAGGAAGGCGGTAGATCGAAACCGTTCACATCATACATTCAGTTACAAATGTTTTCAATGACCTGGGACTGCGCCAGTCAAGTTACCATTCCTGAAAAGGAAATGGTAATGCCCGGCGAGGACGCTACGTTAAAACTGAAACTCTTAAAACCAATGGTGTGCGAAACAGGCCAAAGATTCACACTCCGCCTTGGAGACATTACTTTAGGTACTGGAGTCATTACTAAAATAAACAATAATCTATCTGAGGAAGAAAGAAGCAAACTAATGGAAGGCAAGAAGGCGCGAGAAAAGGCAGCCGCAAAGAAGTAA

Protein

MASITFVKSLVSPAVKLVLKQSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDAADEEMVELVEMEIRELMTEMGYDGDKIPVIKGSALCALEGKSPEIGADAITKLLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQAGDQLGALVRSIKREQIKRGMVMAKPGTAKAHDNLEAAVYILSKEEGGRSKPFTSYIQLQMFSMTWDCASQVTIPEKEMVMPGEDATLKLKLLKPMVCETGQRFTLRLGDITLGTGVITKINNNLSEEERSKLMEGKKAREKAAAKK

Description

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.

Similarity

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.

Uniprot

Q2F6A6   H9JB54   S4PLV3   A0A1C9EGJ8   A0A3S2ND36   G1C2J8   + More
A0A212ENC5   A0A2H1X2I4   A0A194QL14   A0A194PKK7   A0A1J1HQB0   J9HFE1   A0A182JTG3   A0A182P133   A0A182GF15   Q16YK5   B0WRV9   A0A182Y315   A0A182WWM2   A0A182V9M5   A0A182TIL4   A0A182I6V8   A0A182J1G3   A0A084WRQ2   Q7QIP5   A0A182MHQ6   A0A2M3Z1K2   A0A2M3Z1V0   A0A2M4A4A0   A0A2M4BMJ5   A0A182FGC1   A0A2M4BMF5   A0A182Q8D0   A0A2M4BM46   W5J9T4   T1DSS7   A0A2M4BMA0   A0A2M4BM45   A0A182R9U8   A0A0L0C7B8   A0A0K8TSH2   A0A023ETK6   A0A0M5J4W0   A0A182WHX7   A0A182NJT7   U5ESU5   A0A1A9ZPI0   A0A1A9WIY1   A0A1B0GBE5   A0A1I8NVN0   A0A3B0J3E9   A0A1L8ECW5   B3NRK1   A0A1A9VJD7   A0A2J7QJE0   A0A0T6B4E2   A0A1L8ED39   B4KMK6   A0A1B0B4H0   B3MGZ5   B4MS85   B4P4G7   B4MCM2   A0A1B0BZW3   B4JYK2   A0A1W4VGG2   A0A0J9RBZ5   Q28ZS9   B4GGU1   A1Z9E3   A0A1A9XHX0   Q86NS6   A0A067R0M6   A0A0K8WEK5   A0A0A1WLQ1   A0A034WVA3   A0A1I8N2B2   D3TM80   D6X0G1   A0A1B0DQV9   V5I8W6   T1P7S4   W8BY98   A0A336LPD7   A0A0P5TUV2   A0A0N7ZLR2   A0A0P4XTN0   A0A0P6G890   A0A0C9QMJ4   A0A0P5FUV1   A0A0P5QIE8   A0A1Y1JRP4   A0A3R7QM95   A0A1L8DRI0   A0A1L8DR91   N6U1S4   J3JU35   A0A1B6E6U5   A0A0P4VIJ7   R4G7T2  

Pubmed

19121390    23622113    22118469    26354079    17510324    26483478    + More
25244985    24438588    12364791    14747013    17210077    20920257    23761445    26108605    26369729    24945155    17994087    18057021    17550304    22936249    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24845553    25830018    25348373    25315136    20353571    18362917    19820115    24495485    28004739    23537049    22516182    27129103   

EMBL

DQ311166    ABD36111.1    BABH01008626    BABH01008627    BABH01008628    GAIX01003840    + More
JAA88720.1    KX778610    AON96618.1    RSAL01000092    RVE47987.1    JF728817    JF728818    JF728819    AEJ38219.1    AGBW02013697    OWR42951.1    ODYU01012893    SOQ59426.1    KQ461198    KPJ06222.1    KQ459606    KPI91630.1    CVRI01000017    CRK90248.1    CH477298    EJY57527.1    JXUM01059065    JXUM01059066    KQ562033    KXJ76856.1    CH477515    EAT39702.1    DS232061    EDS33524.1    APCN01003702    ATLV01026176    KE525407    KFB52896.1    AAAB01008807    EAA04167.4    AXCM01000491    GGFM01001635    MBW22386.1    GGFM01001667    MBW22418.1    GGFK01002315    MBW35636.1    GGFJ01005020    MBW54161.1    GGFJ01005033    MBW54174.1    AXCN02000522    GGFJ01005019    MBW54160.1    ADMH02002070    ETN59615.1    GAMD01001344    JAB00247.1    GGFJ01005034    MBW54175.1    GGFJ01005018    MBW54159.1    JRES01000803    KNC28288.1    GDAI01000522    JAI17081.1    GAPW01001397    JAC12201.1    CP012524    ALC41631.1    GANO01003090    JAB56781.1    CCAG010013992    OUUW01000001    SPP73762.1    GFDG01002313    JAV16486.1    CH954179    EDV56153.1    NEVH01013556    PNF28697.1    LJIG01009862    KRT82232.1    GFDG01002306    JAV16493.1    CH933808    EDW10853.2    JXJN01008310    CH902619    EDV37913.1    CH963850    EDW74974.1    CM000158    EDW90606.1    CH940659    EDW71410.1    JXJN01023312    CH916377    EDV90764.1    CM002911    KMY93523.1    CM000071    EAL25534.1    CH479183    EDW35711.1    AE013599    AAF58366.1    BT003749    AAO41413.1    KK852824    KDR15448.1    GDHF01003059    JAI49255.1    GBXI01015004    JAC99287.1    GAKP01000700    JAC58252.1    EZ422532    ADD18808.1    KQ971372    EFA09578.1    AJVK01019411    GALX01003970    JAB64496.1    KA644671    AFP59300.1    GAMC01004972    JAC01584.1    UFQT01000100    SSX19906.1    GDIP01122390    JAL81324.1    GDIP01233041    LRGB01001005    JAI90360.1    KZS14129.1    GDIP01247008    JAI76393.1    GDIQ01047519    JAN47218.1    GBYB01001847    JAG71614.1    GDIQ01255668    JAJ96056.1    GDIQ01120194    JAL31532.1    GEZM01102360    GEZM01102359    JAV51899.1    QCYY01000667    ROT83583.1    GFDF01005124    JAV08960.1    GFDF01005125    JAV08959.1    APGK01043512    KB741014    KB632063    ENN75505.1    ERL88437.1    BT126747    AEE61709.1    GEDC01003663    JAS33635.1    GDKW01002855    JAI53740.1    ACPB03024585    GAHY01002177    JAA75333.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000183832    + More
UP000008820    UP000075881    UP000075885    UP000069940    UP000249989    UP000002320    UP000076408    UP000076407    UP000075903    UP000075902    UP000075840    UP000075880    UP000030765    UP000007062    UP000075883    UP000069272    UP000075886    UP000000673    UP000075900    UP000037069    UP000092553    UP000075920    UP000075884    UP000092445    UP000091820    UP000092444    UP000095300    UP000268350    UP000008711    UP000078200    UP000235965    UP000009192    UP000092460    UP000007801    UP000007798    UP000002282    UP000008792    UP000001070    UP000192221    UP000001819    UP000008744    UP000000803    UP000092443    UP000027135    UP000095301    UP000007266    UP000092462    UP000076858    UP000283509    UP000019118    UP000030742    UP000015103   

PRIDE

Q2F6A6    H9JB54    A1Z9E3    Q86NS6   

Pfam

PF03143   GTP_EFTU_D3        + More
PF03144   GTP_EFTU_D2
PF00009   GTP_EFTU
PF17681   GCP_N_terminal
PF04130   GCP_C_terminal
PF03638   TCR
PF03359   GKAP

Interpro

IPR004161   EFTu-like_2        + More
IPR009000   Transl_B-barrel_sf       
IPR033720   EFTU_2       
IPR027417   P-loop_NTPase       
IPR041709   EF-Tu_GTP-bd       
IPR004541   Transl_elong_EFTu/EF1A_bac/org       
IPR031157   G_TR_CS       
IPR009001   Transl_elong_EF1A/Init_IF2_C       
IPR004160   Transl_elong_EFTu/EF1A_C       
IPR000795   TF_GTP-bd_dom       
IPR005225   Small_GTP-bd_dom       
IPR041470   GCP_N       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR042241   GCP_C_sf       
IPR012934   Znf_AD       
IPR040457   GCP_C       
IPR033467   Tesmin/TSO1-like_CXC       
IPR005172   CRC       
IPR005026   SAPAP       

SUPFAM

SSF50465   SSF50465        + More
SSF52540   SSF52540       
SSF50447   SSF50447       
SSF57667   SSF57667       

Gene 3D

1.20.120.1900    

CDD

cd01884  EF_Tu
cd03697  EFTU_II

ProteinModelPortal

Q2F6A6   H9JB54   S4PLV3   A0A1C9EGJ8   A0A3S2ND36   G1C2J8   + More
A0A212ENC5   A0A2H1X2I4   A0A194QL14   A0A194PKK7   A0A1J1HQB0   J9HFE1   A0A182JTG3   A0A182P133   A0A182GF15   Q16YK5   B0WRV9   A0A182Y315   A0A182WWM2   A0A182V9M5   A0A182TIL4   A0A182I6V8   A0A182J1G3   A0A084WRQ2   Q7QIP5   A0A182MHQ6   A0A2M3Z1K2   A0A2M3Z1V0   A0A2M4A4A0   A0A2M4BMJ5   A0A182FGC1   A0A2M4BMF5   A0A182Q8D0   A0A2M4BM46   W5J9T4   T1DSS7   A0A2M4BMA0   A0A2M4BM45   A0A182R9U8   A0A0L0C7B8   A0A0K8TSH2   A0A023ETK6   A0A0M5J4W0   A0A182WHX7   A0A182NJT7   U5ESU5   A0A1A9ZPI0   A0A1A9WIY1   A0A1B0GBE5   A0A1I8NVN0   A0A3B0J3E9   A0A1L8ECW5   B3NRK1   A0A1A9VJD7   A0A2J7QJE0   A0A0T6B4E2   A0A1L8ED39   B4KMK6   A0A1B0B4H0   B3MGZ5   B4MS85   B4P4G7   B4MCM2   A0A1B0BZW3   B4JYK2   A0A1W4VGG2   A0A0J9RBZ5   Q28ZS9   B4GGU1   A1Z9E3   A0A1A9XHX0   Q86NS6   A0A067R0M6   A0A0K8WEK5   A0A0A1WLQ1   A0A034WVA3   A0A1I8N2B2   D3TM80   D6X0G1   A0A1B0DQV9   V5I8W6   T1P7S4   W8BY98   A0A336LPD7   A0A0P5TUV2   A0A0N7ZLR2   A0A0P4XTN0   A0A0P6G890   A0A0C9QMJ4   A0A0P5FUV1   A0A0P5QIE8   A0A1Y1JRP4   A0A3R7QM95   A0A1L8DRI0   A0A1L8DR91   N6U1S4   J3JU35   A0A1B6E6U5   A0A0P4VIJ7   R4G7T2  

PDB

1XB2     E-value=5.90688e-152,     Score=1379

KEGG

692807    K02358 elongation factor Tu | (RefSeq) elongation factor Tu

GO

GO:0003746   GO:0003924   GO:0005525   GO:0005739   GO:0006414   GO:0070125   GO:0008270   GO:0005634   GO:0043015   GO:0023052   GO:0007030   GO:0000278   GO:0008283   GO:0003743   GO:0016021   GO:0005622   GO:0006974   GO:0001664   GO:0007264   GO:0003824  

Length:

465

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02654

Exp number, first 60 AAs:

0.02091

Total prob of N-in:

0.00431

outside

1  -  465

 

 

Pi

196.604741

Theta

196.483136

Tajima's D

0.142378

CLR

0.377035

CSRT

0.407529623518824

Interpretation

Uncertain