Silkworm Genome Informatics Database

Gene

KWMTBOMO05563

Pre Gene Modal

BGIBMGA006748

Annotation

PREDICTED:_uncharacterized_protein_LOC105842216_[Bombyx_mori]

Location

Bomo_Chr10(+):5128022-5130285 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.562 Nuclear Reliability : 1.751

CDS

ATGAATAAGGCAGATTTACCCAATCAAAAAGCACATGAACCTAAAGAAGCAGCAAAACAACCACCACAAGAGCAACCGGAAGTATTATCAACTTTTGCCCTGCCTTTATCTATAAAAGACAATATTCCACACGTTGGTGATTCAGACGTCATAGGAAGTATTCCTGATCAAAGCAACGGCACATGCATGGACGTCCTCAGCCAGCCGACGGGTCTCCCTCATCGTCAGAGACTTTTGTGGCTTCAAAAGCATCGAACCGTTGGTTTGTGGGTCCAGTGCGATGACTGCGATCGCTGGCGTTATCTCCCTAATGTACTCGATAGCAGTGAATTACCAAAAAAATGGTATTGCCGGTTGCATCCAGATTCAACGAGTGCGGATTGTTCGATTCCCGAAGCTCCACTCCGCATCCGTGAAGAGGAAGATCTTATTCACGGCGACTACTCCGCCGGCTCGGTAGTATGGGCGAGATTAGATGGCTGGCCGTGGTGGCCCGCAATGGTTGACGACTGCCCAGATACAGAGCAGTTCTACTGGCTTGATGGTTACTCCGATATACCTGTATGTTCATCATTAAAGTTTTAA

Protein

MNKADLPNQKAHEPKEAAKQPPQEQPEVLSTFALPLSIKDNIPHVGDSDVIGSIPDQSNGTCMDVLSQPTGLPHRQRLLWLQKHRTVGLWVQCDDCDRWRYLPNVLDSSELPKKWYCRLHPDSTSADCSIPEAPLRIREEEDLIHGDYSAGSVVWARLDGWPWWPAMVDDCPDTEQFYWLDGYSDIPVCSSLKF

Uniprot

A0A2A4JAV7 A0A2H1X274 A0A1C9EGK7 S4PX80 A0A212EN82 A0A194QKX5 + More
A0A154PQS1 A0A151WWU8 A0A026W4Q3 A0A3L8DVE7 A0A1A6G0X6

Pubmed

23622113 22118469 26354079 24508170 30249741

EMBL

NWSH01002311 PCG68552.1 ODYU01012893 SOQ59425.1 KX778610 AON96617.1 + More
GAIX01005503 JAA87057.1 AGBW02013697 OWR42952.1 KQ461198 KPJ06223.1 KQ435050 KZC14242.1 KQ982684 KYQ52350.1 KK107419 EZA51060.1 QOIP01000003 RLU24460.1 LZPO01107948 OBS59843.1

Proteomes

UP000218220 UP000007151 UP000053240 UP000076502 UP000075809 UP000053097 + More
UP000279307 UP000092124

Pfam

PF00009   GTP_EFTU        + More
PF03144   GTP_EFTU_D2
PF07496   zf-CW
PF00855   PWWP
PF03143   GTP_EFTU_D3

Interpro

IPR011124   Znf_CW        + More
IPR000313   PWWP_dom
IPR000795   TF_GTP-bd_dom
IPR009001   Transl_elong_EF1A/Init_IF2_C
IPR004160   Transl_elong_EFTu/EF1A_C
IPR009000   Transl_B-barrel_sf
IPR004161   EFTu-like_2
IPR033720   EFTU_2
IPR027417   P-loop_NTPase

SUPFAM

SSF50447   SSF50447        + More
SSF52540   SSF52540
SSF50465   SSF50465

CDD

cd03697 EFTU_II

ProteinModelPortal

A0A2A4JAV7 A0A2H1X274 A0A1C9EGK7 S4PX80 A0A212EN82 A0A194QKX5 + More
A0A154PQS1 A0A151WWU8 A0A026W4Q3 A0A3L8DVE7 A0A1A6G0X6

PDB

6O1E E-value=2.13451e-09, Score=145

KEGG

105842216 no KO assigned | (RefSeq) uncharacterized LOC105842216

GO

GO:0003924 GO:0008270 GO:0005525 GO:0046872 GO:0016020 GO:0006974 GO:0001664 GO:0007264 GO:0003824

Length:

194

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

0

Total prob of N-in:

0.20537

outside

1 - 194

Pi

78.937116

Theta

190.116819

Tajima's D

-1.658472

CLR

610.302333

CSRT

0.0409479526023699

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics