SGID The Silkworm Genome Information Database
Gene
KWMTBOMO05562
Pre Gene Modal
BGIBMGA006591
Annotation
hypothetical_protein_KGM_06029_[Danaus_plexippus]
Full name
RING finger protein 10      
Location in the cell
Nuclear   Reliability : 4.079
 

Sequence

CDS
ATGGACAAAAAATTAAATCGATCAACTCAACCACAGTCGAGGGCATCAGCCGTCGACTGTAAAAAGCACTCCGATTTGACTCACAAGCCTTGGCCCCGCAACAATAAGAAACGTGAAGGTCCTGGTGGCACACCTAAAAATGAACCATTTCGGAAAAATGTATCTGTACCAAGAGGTAGGGGTTCAGGTGACAGAAGATCACGTCCTCGTGAATCAGCCAGTTCACAAATGGATGGAACTCCGAACTCCAGGCTAGGGGATGATGATGAACCAGAAATAGGCTCAGTTTTTGTGCCTGGCAGTAAGAAACAGAACTTCAATCATTTGTTGAATTTTATGTACCCCACTAGGGGTAACATAGAACGCAGTGAACGGCGAGGACCACTGTTGCAACGTCAACAATTCCACCGTTTATCTTTTCGACAAGATCATGATCTGTACCTAAGAGCTTATTGTCAATTTGTAGTGAAGGAAGATTATGATTACAAGATAAACTCATTGGATCCTGATGTGCCAATTAAATGGGATGAAATTGAAGAAATTGTTGTAAGAAGCACTGGAAAGTCTGAATGCCCTATATGTTTGGGGACCCCAGTAGCTGGCCGTGTAGGTCTCTGTAGCCATGTGTATTGTTGGGCATGTGTTCTTCACTATGCTGCAGCGCATGAAAAACAACCTCCACCTTGTCCAGTGTGTACTGCACCCCTCAATGTTAAAGACATGAAACCTACTAAAATGCTGCAGTGGGATGCTCCTGCTGAGGAGGTAACAATGCGACTTGTTCGTCGCCTGCGTGGCTCTACAATAGTGGAAGTTGCACCACTGCGGGGTCAGGTCACTGATTCTATCCCCTCATCTATTTTGCCAATAGAGAATATCCATAGTGCACCATTTTGTAAAATGTTTTCTGCAAACAAACATCAGATTCATGAAATTTTAAAAAGGGAAAGAAATGAAATAGAAACCCAAATATTGGAAGAAATAGATACCACAGAAATAGTTTATCTAGAACAGGCTTTGCAAATGCTTAAACAGAAAGAAGATAAAATTGGACAAAAAAATGAGATGCTGAAAATTGATGTTGAAAATAATGAAGTCCCTCCTCCTATTGTGTATGAAAAGCAGGAGGTTAATGAAAACAAACTTGATTGGTTTAATGTTACTGACGATGGAGCTGCTTGTATGGAAGATATTCAAAATGAAATAGCAAATATTGATTTCAAAGAAACCAAATGGAACCCTGATGCTCCTGAATTCTCTCTAAATGAGGGTACTACTATACAGGCTTCAACTCAAGATGGAATAAATGATGTTTTTCTATCAGAAACTGATAATACGGACACAAATAAATACATAACAGATATTGACAAACAAAATCAGGCAAAATATTTTTATTTCTATCAAGCTGAAGACGGACAGCAAGTGTTTTTGAACAGCTTAAACGTGCGTATTCTGAATGAGTCTTGGGGCGCACTTGCTGCTGCACCTACAACCATCACTGGAAGGGTTCTACACCGTGAGACATTGCCCCTGACGGAACAGACAAGAAAACACATGCCATATACAGCGCATTTGCCTCTCTATTGCTCAGTAGATATAGTGGAGTTAGAACTACAACCTCCGTATGTGACAGCAAATGCACTTGAAAATTTCACTGAGGAATTATATCGGCGAGCTCGAGTCCGGGCCCGCCACGAACGGGACGAAAGGCGCCGCGAGCGCGCATACCGCCGCCAGATCGAAGGACCTCCTAAGCCGGACTTCTCCTCTGATGAACTGTTTCCGCCAGCTTCGTCATCATTTTCCAGCGCTGGAGTCGACCCGCCGCTTGCCGAAGAACCGAGCCCCTCTACGAGCATGAGCTCGCCGCCTCCATCAGGCCTGTCCTTTGCAAAGATGGCTGGTAGCAGTGGCACATGGCGCGTTCGGCCAACTGTCTCAGCTCCACCGCCACCGCCGCCGCCTGACGAGGAAGGCACGGGCCCACGTGCGCTCAACCTTAGCGACGCAATCGAGGCAGCCTTACACGCTGCACCGGTGCCCTCAACTAAGAAGAACAAAAAGTCCAAACAAAAAGTGCTTTTTGCCACTGGCATGCAACGTGCTGCCTAG
Protein
MDKKLNRSTQPQSRASAVDCKKHSDLTHKPWPRNNKKREGPGGTPKNEPFRKNVSVPRGRGSGDRRSRPRESASSQMDGTPNSRLGDDDEPEIGSVFVPGSKKQNFNHLLNFMYPTRGNIERSERRGPLLQRQQFHRLSFRQDHDLYLRAYCQFVVKEDYDYKINSLDPDVPIKWDEIEEIVVRSTGKSECPICLGTPVAGRVGLCSHVYCWACVLHYAAAHEKQPPPCPVCTAPLNVKDMKPTKMLQWDAPAEEVTMRLVRRLRGSTIVEVAPLRGQVTDSIPSSILPIENIHSAPFCKMFSANKHQIHEILKRERNEIETQILEEIDTTEIVYLEQALQMLKQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANIDFKETKWNPDAPEFSLNEGTTIQASTQDGINDVFLSETDNTDTNKYITDIDKQNQAKYFYFYQAEDGQQVFLNSLNVRILNESWGALAAAPTTITGRVLHRETLPLTEQTRKHMPYTAHLPLYCSVDIVELELQPPYVTANALENFTEELYRRARVRARHERDERRRERAYRRQIEGPPKPDFSSDELFPPASSSFSSAGVDPPLAEEPSPSTSMSSPPPSGLSFAKMAGSSGTWRVRPTVSAPPPPPPPDEEGTGPRALNLSDAIEAALHAAPVPSTKKNKKSKQKVLFATGMQRAA

Summary

Description
Transcriptional factor involved in the regulation of MAG (Myelin-associated glycoprotein) expression. Acts as a regulator of Schwann cell differentiation and myelination.
Subunit
Interacts with MEOX2.
Similarity
Belongs to the RNF10 family.
Keywords
Alternative splicing   Complete proteome   Cytoplasm   DNA-binding   Metal-binding   Nucleus   Phosphoprotein   Polymorphism   Reference proteome   Transcription   Transcription regulation   Zinc   Zinc-finger  
Feature
chain  RING finger protein 10
splice variant  In isoform 2.
sequence variant  In dbSNP:rs17852961.
EMBL
BABH01008626    NWSH01002311    PCG68554.1    AGBW02013697    OWR42953.1    GAIX01003972    + More
JAA88588.1    KX778610    AON96616.1    RSAL01000092    RVE47989.1    KQ461198    KPJ06224.1    KQ459606    KPI91632.1    ODYU01012296    SOQ58532.1    LJIG01009385    KRT83186.1    NNAY01000613    OXU27398.1    KK853247    KDR09385.1    KZ288254    PBC30724.1    DS235327    EEB14721.1    NEVH01005906    PNF38149.1    GDHC01003115    JAQ15514.1    GBHO01032149    JAG11455.1    GBRD01005572    JAG60249.1    GEDC01028184    JAS09114.1    GBGD01000528    JAC88361.1    GFWZ01000315    MBW20305.1    GEMB01003113    JAS00096.1    JRES01000036    KNC34676.1    GEBQ01030895    JAT09082.1    GDKW01000048    JAI56547.1    CH477537    EAT39339.1    KQ435763    KOX75411.1    GAPW01000270    JAC13328.1    JXUM01100611    KQ564584    KXJ72061.1    GGFJ01002371    MBW51512.1    GAMD01002803    JAA98787.1    GGFJ01002086    MBW51227.1    GGFJ01002085    MBW51226.1    MRZV01000163    PIK56804.1    AAWZ02025412    AHZZ02003137    AQIA01013004    AQIA01013005    AQIA01013006    AQIA01013007    CABD030087085    CABD030087086    CABD030087087    CABD030087088    CABD030087089    AB179071    BAE02122.1    KL206976    KFV87772.1    KL887195    KGL74604.1    AKHW03004053    KYO31692.1    JSUE03007992    JSUE03007993    JSUE03007994    JSUE03007995    KYO31693.1    AWGT02005239    OXB68223.1    BC142798    AAI42799.1    ADON01119313    AB027196    D87451    BT006974    BC016622    BC031596    BC101709    BC101715    AL389976    NDHI03003364    PNJ82365.1    PNJ82367.1    ABGA01180282    ABGA01180283    ABGA01180284    ABGA01180285    ABGA01180286    ABGA01180287    ABGA01180288    ABGA01180289    ABGA01180290    CM001286    EHH66776.1    JU321240    JU472992    AFE64996.1    AFH29796.1    AFYH01006491    AFYH01006492    AFYH01006493    AFYH01006494    BC123470    BC146068    AQIB01027074    AQIB01027075    AQIB01027076    AQIB01027077    PNJ82363.1    AJFE02115708    AJFE02115709    AJFE02115710    AJFE02115711    AJFE02115712    AJFE02115713    AJFE02115714    MCFN01000114    OXB64625.1    KB744033    EOA96266.1    AK126274    BAG54301.1    AACZ04070289    AACZ04070290    AACZ04070291    AACZ04070292    LSYS01006629    OPJ74747.1   
Pfam
PF00097   zf-C3HC4        + More
PF13639   zf-RING_2
Interpro
IPR001841   Znf_RING        + More
IPR039739   Mag2/Rnf10       
IPR017907   Znf_RING_CS       
IPR013083   Znf_RING/FYVE/PHD       
IPR018957   Znf_C3HC4_RING-type       
Gene 3D
PDB
1CHC     E-value=0.00619566,     Score=96

Ontologies

Topology

Subcellular location
Cytoplasm  
Nucleus  
Length:
703
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02339
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00247
outside
1  -  703
 
 

Population Genetic Test Statistics

Pi
247.280752
Theta
211.24282
Tajima's D
-0.463569
CLR
1.775201
CSRT
0.251387430628469
Interpretation
Uncertain
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