Gene

KWMTBOMO05552  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006743

Annotation

PREDICTED:_troponin_C?_isoform_1-like_[Bombyx_mori]

Location

Bomo_Chr10(+):4774537-4779791      View in EpiBrowser

Full name

Troponin C, isoform 1      

Location in the cell

Cytoplasmic   Reliability : 1.36 Extracellular   Reliability : 1.396 Nuclear   Reliability : 1.157

CDS

ATGTTGAAAGTTTTGTTAATCGTGTCTTTCTGTTTCTGTTGCATGGATCTCGCGCAGGAGGAACTAGACAAAAATCAACTGCTGCTACTGAAAAACGCTTTCGATGCCTTCGACCGCGAGAAGAAGGGTATCATCAGCACCGACATGATCGGGACTATTCTAGAAATGTTAGGTCATGAGCTTGATGATGACACGCTGAATGAAATCATTGATGAAATTGATGTTGATCATAGTGGTCAGTTAGAGTTCAATGAGTTCTGCACACTCGCAGCAAAGTTTTTAACAGAGGAAGATCAGGATGACGAAACCATGAGACAGGAACTGAAGGAAGCATTCCGGTTATACGACAAAGAAGTGCACGAGGCTTAG

Protein

MLKVLLIVSFCFCCMDLAQEELDKNQLLLLKNAFDAFDREKKGIISTDMIGTILEMLGHELDDDTLNEIIDEIDVDHSGQLEFNEFCTLAAKFLTEEDQDDETMRQELKEAFRLYDKEVHEA

Similarity

Belongs to the troponin C family.

Keywords

Calcium   Complete proteome   Metal-binding   Muscle protein   Reference proteome   Repeat  

Feature

chain  Troponin C, isoform 1

Uniprot

H9JB48   A0A2H1WQA3   A0A2A4K681   A0A0L7LJM7   A0A158P1M2   A0A1S4FE11   + More
A0A2P0XIE3   Q1M0Y3   A0A0J7L3L6   Q175S8   Q175S7   A0A182GH33   A0A1Q3G4H1   A0A023ELU9   A0A1A9XUL9   A0A1B0AMF5   A0A2H1VSY4   A0A2J7PQ69   A0A182KNV2   Q1A7B3   A0A182I197   A0A182QZ90   A0A182VES1   A7UU41   A0A1A9UV94   A0A1B0ABJ8   A0A195F7S9   T1E8H1   A0A2M4B012   T1E7R1   I7JI16   A0A2Y9D0M9   W5JF97   Q5TR40   A0A2M4C267   A0A2A4K5B6   A0A1A9X4F1   A7UU42   A0A151X7D1   E2BNZ1   A0A336LA48   A0A195CSL4   A0A067QQT5   A0A1J1J0Q6   A0A3S2NU27   U5EK38   Q1A7B2   V9IFG6   I7KJQ1   A0A0L0CHR6   A0A1I8N5A1   A0A1S4E804   A0A1I8PL96   A0A1I8N5B4   T1PGU9   A0A1I8PLH1   A0A0C9RGR6   A0A2P8XUV8   Q09IV5   B4J6G5   A0A1S3CX92   A0A194PKM1   T1HIM0   A0A212ERZ9   B4GBH5   A0A154PK72   A0A182WLN3   A0A0Q9X9L1   W8BU05   A0A182J6V0   B4KLT5   A0A0A1WWS5   A0A0A1X2W4   A0A3B0JY19   A0A182NK07   B4LPF8   B0WZL6   A0A182FHZ0   E5L9V3   A0A182RDV0   A0A034V3A2   A0A182PAY5   A0A0Q9WDI3   B0XEB7   A0A336M7V2   A0A182X5E9   A0A2A3EGR0   A0A1W4VJZ2   A0A182LZS1   A0A161M9T3   A0A0P4VW04   A0A023FAY1   R4G850   B4ISS4   B3N430   B4R4G1   A0A0B4K6P6   P47947   A0A1D1Y993   B3MWV3  

Pubmed

19121390    26227816    21347285    17510324    16751002    26483478    + More
24945155    20966253    12364791    14747013    17210077    15696366    20920257    23761445    20798317    24845553    26108605    25315136    29403074    17994087    26354079    22118469    24495485    18057021    25830018    20978910    25348373    27129103    25474469    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    7980384    12537569   

EMBL

BABH01008594    BABH01008595    BABH01008596    BABH01008597    ODYU01010205    SOQ55166.1    + More
NWSH01000113    PCG79428.1    JTDY01000882    KOB75569.1    ADTU01006630    KY661297    AVA17384.1    AY792950    AAX33730.1    LBMM01000909    KMQ97236.1    CH477396    EAT41816.1    EAT41814.1    JXUM01062964    JXUM01062965    JXUM01062966    JXUM01062967    KQ562224    KXJ76363.1    GFDL01000345    JAV34700.1    GAPW01003351    GEHC01000717    JAC10247.1    JAV46928.1    JXJN01000410    ODYU01004266    SOQ43955.1    NEVH01022640    PNF18484.1    DQ279092    ABB89296.1    APCN01000045    AXCN02000495    AAAB01008960    EDO63819.1    KQ981756    KYN36119.1    GAMD01002773    JAA98817.1    GGFK01012837    MBW46158.1    GAMD01002827    JAA98763.1    BK001613    DAA01881.1    ADMH02001577    GGFL01004236    ETN62008.1    MBW68414.1    EAA44176.4    GGFJ01010271    MBW59412.1    PCG79427.1    EDO63820.1    KQ982450    KYQ56234.1    GL449511    EFN82583.1    UFQS01002256    UFQT01002256    UFQT01002310    SSX13617.1    SSX33043.1    SSX33195.1    KQ977305    KYN03703.1    KK853076    KDR11750.1    CVRI01000066    CRL05920.1    RSAL01000194    RVE44578.1    GANO01001961    JAB57910.1    DQ279093    ABB89297.1    JR041330    AEY59412.1    BK001612    DAA01879.1    JRES01000379    KNC31791.1    KA647370    AFP61999.1    GBYB01012337    JAG82104.1    PYGN01001308    PSN35799.1    DQ889211    GQ396705    ABI54279.1    ACV33063.1    CH916367    EDW01966.1    KQ459606    KPI91645.1    ACPB03011210    AGBW02012900    OWR44239.1    CH479181    EDW31270.1    KQ434943    KZC12281.1    CH933808    KRG04877.1    GAMC01003878    JAC02678.1    EDW09745.2    KRG04876.1    GBXI01011444    JAD02848.1    GBXI01008845    JAD05447.1    OUUW01000001    SPP75988.1    CH940648    EDW61217.1    DS232210    EDS37530.1    HQ384084    ADQ64577.1    GAKP01021206    GAKP01021204    JAC37746.1    KRF79857.1    DS232817    EDS25891.1    UFQS01000523    UFQT01000523    SSX04586.1    SSX24949.1    KZ288262    PBC30346.1    AXCM01002999    GEMB01003824    JAR99430.1    GDKW01001742    JAI54853.1    GBBI01000523    JAC18189.1    GAHY01001587    JAA75923.1    CH891590    EDW99506.2    CH954177    EDV59924.2    CM000366    CM002911    EDX17051.1    KMY91590.1    AE013599    KX531484    AFH07894.1    ANY27294.1    X76043    AY075534    GDJX01016719    JAT51217.1    CH902626    EDV41457.2   

Proteomes

UP000005204    UP000218220    UP000037510    UP000005205    UP000036403    UP000008820    + More
UP000069940    UP000249989    UP000092443    UP000092460    UP000235965    UP000075882    UP000075840    UP000075886    UP000075903    UP000007062    UP000078200    UP000092445    UP000078541    UP000000673    UP000091820    UP000075809    UP000008237    UP000078542    UP000027135    UP000183832    UP000283053    UP000005203    UP000037069    UP000095301    UP000079169    UP000095300    UP000245037    UP000001070    UP000053268    UP000015103    UP000007151    UP000008744    UP000076502    UP000075920    UP000009192    UP000075880    UP000268350    UP000075884    UP000008792    UP000002320    UP000069272    UP000075900    UP000075885    UP000076407    UP000242457    UP000192221    UP000075883    UP000002282    UP000008711    UP000000304    UP000000803    UP000007801   

PRIDE

H9JB48    Q09IV5    P47947   

Pfam

PF13499   EF-hand_7        + More
PF13833   EF-hand_8
PF00036   EF-hand_1

Interpro

IPR011992   EF-hand-dom_pair        + More
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR000483   Cys-rich_flank_reg_C       
IPR032675   LRR_dom_sf       

SUPFAM

SSF47473   SSF47473       

Gene 3D

3.80.10.10    

CDD

cd00051  EFh

ProteinModelPortal

H9JB48   A0A2H1WQA3   A0A2A4K681   A0A0L7LJM7   A0A158P1M2   A0A1S4FE11   + More
A0A2P0XIE3   Q1M0Y3   A0A0J7L3L6   Q175S8   Q175S7   A0A182GH33   A0A1Q3G4H1   A0A023ELU9   A0A1A9XUL9   A0A1B0AMF5   A0A2H1VSY4   A0A2J7PQ69   A0A182KNV2   Q1A7B3   A0A182I197   A0A182QZ90   A0A182VES1   A7UU41   A0A1A9UV94   A0A1B0ABJ8   A0A195F7S9   T1E8H1   A0A2M4B012   T1E7R1   I7JI16   A0A2Y9D0M9   W5JF97   Q5TR40   A0A2M4C267   A0A2A4K5B6   A0A1A9X4F1   A7UU42   A0A151X7D1   E2BNZ1   A0A336LA48   A0A195CSL4   A0A067QQT5   A0A1J1J0Q6   A0A3S2NU27   U5EK38   Q1A7B2   V9IFG6   I7KJQ1   A0A0L0CHR6   A0A1I8N5A1   A0A1S4E804   A0A1I8PL96   A0A1I8N5B4   T1PGU9   A0A1I8PLH1   A0A0C9RGR6   A0A2P8XUV8   Q09IV5   B4J6G5   A0A1S3CX92   A0A194PKM1   T1HIM0   A0A212ERZ9   B4GBH5   A0A154PK72   A0A182WLN3   A0A0Q9X9L1   W8BU05   A0A182J6V0   B4KLT5   A0A0A1WWS5   A0A0A1X2W4   A0A3B0JY19   A0A182NK07   B4LPF8   B0WZL6   A0A182FHZ0   E5L9V3   A0A182RDV0   A0A034V3A2   A0A182PAY5   A0A0Q9WDI3   B0XEB7   A0A336M7V2   A0A182X5E9   A0A2A3EGR0   A0A1W4VJZ2   A0A182LZS1   A0A161M9T3   A0A0P4VW04   A0A023FAY1   R4G850   B4ISS4   B3N430   B4R4G1   A0A0B4K6P6   P47947   A0A1D1Y993   B3MWV3  

PDB

2JNF     E-value=1.61726e-13,     Score=177

KEGG

101738760    no KO assigned | (RefSeq) troponin C, isoform 1-like

GO

GO:0005509   GO:0016021   GO:0019722   GO:0005507   GO:0004535   GO:0046872   GO:0006974   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

SignalP

Position:   1 - 18,         Likelihood:  0.948102

 

 

Length:

122

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01825

Exp number, first 60 AAs:

0.01824

Total prob of N-in:

0.03278

outside

1  -  122

 

 

Pi

220.307574

Theta

162.246771

Tajima's D

0.986972

CLR

0.316103

CSRT

0.656317184140793

Interpretation

Uncertain