Gene

KWMTBOMO05551

Pre Gene Modal

BGIBMGA006742

Annotation

troponin_C_type_IIIa-like_protein_[Bombyx_mori]

Location

Bomo_Chr10(+):4754487-4762102      View in EpiBrowser

Full name

Troponin C, isoform 1      

Location in the cell

Cytoplasmic   Reliability : 3.19

CDS

ATGGAGGAGCTCGACAAGGAACAGATTGCCATTTTAAGGAAAGCCTTCGAAGCCTTCGATCATGAGAAGAAAGGCTGTATCGGTACTGTGATGGTTGGCACGATCCTCGGCATGCTGGGACACAACGTCACTGATGACATGTTGAAGGAAATCATCCAAGAAGTTGATGTTGATGGTTCCGGTGAACTGGAGTTTGAGGAGTTTGTTACATTAGCATCTAGATTCATGGTCGAGGAAGATGCTGAGGCCATGCAGCAAGAACTGAAAGAAGCATTCCGATTATACGATAAAGAAGGTAATGGCTACATCACGACTGCAGTATTGAGGGAAATTCTGAGGGAGCTAGACGACAAAATCAGCGCCGAAGAACTGGACATGATGATTGAAGAAATCGATTCCGACGGCTCGGGAACTGTTGATTTTGATGAATTCATGGAAGTCATGACTGGCGGAGATGACTAA

Protein

MEELDKEQIAILRKAFEAFDHEKKGCIGTVMVGTILGMLGHNVTDDMLKEIIQEVDVDGSGELEFEEFVTLASRFMVEEDAEAMQQELKEAFRLYDKEGNGYITTAVLREILRELDDKISAEELDMMIEEIDSDGSGTVDFDEFMEVMTGGDD

Similarity

Belongs to the troponin C family.

Keywords

Calcium   Complete proteome   Metal-binding   Muscle protein   Reference proteome   Repeat  

Feature

chain  Troponin C, isoform 1

Uniprot

Q09IV5   A0A2A4K5B6   H9JB47   A0A212ERZ9   A0A3S2NU27   A0A194PKM1   + More
Q6F437   A0A194QLJ1   A0A1Q3G4H1   A0A0L7LUS8   T1E8H1   A0A2M4B012   I7JI16   A0A2Y9D0M9   W5JF97   Q5TR40   A0A2M4C267   A0A182KNV2   A0A182I197   A0A182QZ90   A0A182VES1   A7UU41   A0A336LA48   A7UU42   T1E7R1   Q1A7B3   B0WZL6   B0XEB7   A0A182FHZ0   A0A182PAY5   A0A336MQJ7   A0A067QQT5   A0A182NK07   A0A182RDV0   A0A182WLN3   A0A2J7PQ69   A0A182X5E9   A0A182LZS1   A0A182J6V0   A0A1A9XUL9   A0A1B0AMF5   U5EK38   Q1A7B2   E2BNZ1   A0A182TGU6   A0A1Y1LQU2   A0A158P1M2   A0A1I8PL96   A0A1I8N5B4   A0A1W4WKN6   V9IFG6   I7KJQ1   A0A1A9X4F1   A0A1A9UV94   A0A1B0ABJ8   A0A0L0CHR6   T1PGU9   A0A1I8PLH1   A0A0Q9X9L1   A0A2P0XIE3   Q175S7   A0A182GH33   Q1M0Y3   B4J6G5   B4LPF8   A0A1I8N5A1   A0A0C9RGR6   A0A1L8DNA5   A0A084WL37   Q8WRN4   Q175S8   B4KLT5   A0A023ELU9   A0A1S4FE11   A0A3B0JY19   A0A1W4VJZ2   B3MWV3   A0A0Q9WDI3   A0A034V3A2   B4ISS4   B3N430   B4R4G1   A0A0B4K6P6   P47947   J3JTA1   E5L9V3   D6X095   B4GBH5   A0A2P8XUV8   E2ANM7   A0A1B1RUY0   A0A2P1ANK3   A0A0K8W3K5   A0A1D1Y993   I7LRE4   B4MQV1   A0A0P4VW04   A0A023FAY1   R4G850   A0A0A9ZC59  

Pubmed

19121390    22118469    26354079    26227816    15696366    20920257    + More
23761445    12364791    14747013    17210077    20966253    16751002    24845553    20798317    28004739    21347285    25315136    26108605    17994087    17510324    26483478    24438588    18057021    24945155    25348373    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    7980384    12537569    22516182    20978910    18362917    19820115    29403074    27129103    25474469    25401762    26823975   

EMBL

DQ889211    GQ396705    ABI54279.1    ACV33063.1    NWSH01000113    PCG79427.1    + More
BABH01008590    AGBW02012900    OWR44239.1    RSAL01000194    RVE44578.1    KQ459606    KPI91645.1    AB180453    BAD26697.1    KQ461198    KPJ06239.1    GFDL01000345    JAV34700.1    JTDY01000040    KOB79233.1    GAMD01002773    JAA98817.1    GGFK01012837    MBW46158.1    BK001613    DAA01881.1    APCN01000045    ADMH02001577    GGFL01004236    ETN62008.1    MBW68414.1    AAAB01008960    EAA44176.4    GGFJ01010271    MBW59412.1    AXCN02000495    EDO63819.1    UFQS01002256    UFQT01002256    UFQT01002310    SSX13617.1    SSX33043.1    SSX33195.1    EDO63820.1    GAMD01002827    JAA98763.1    DQ279092    ABB89296.1    DS232210    EDS37530.1    DS232817    EDS25891.1    UFQS01001584    UFQT01001584    SSX11496.1    SSX31063.1    KK853076    KDR11750.1    NEVH01022640    PNF18484.1    AXCM01002999    JXJN01000410    GANO01001961    JAB57910.1    DQ279093    ABB89297.1    GL449511    EFN82583.1    GEZM01051848    JAV74670.1    ADTU01006630    JR041330    AEY59412.1    BK001612    DAA01879.1    JRES01000379    KNC31791.1    KA647370    AFP61999.1    CH933808    KRG04877.1    KY661297    AVA17384.1    CH477396    EAT41814.1    JXUM01062964    JXUM01062965    JXUM01062966    JXUM01062967    KQ562224    KXJ76363.1    AY792950    AAX33730.1    CH916367    EDW01966.1    CH940648    EDW61217.1    GBYB01012337    JAG82104.1    GFDF01006240    JAV07844.1    ATLV01024178    ATLV01024179    KE525350    KFB50931.1    AF432912    AAL57489.1    EAT41816.1    EDW09745.2    KRG04876.1    GAPW01003351    GEHC01000717    JAC10247.1    JAV46928.1    OUUW01000001    SPP75988.1    CH902626    EDV41457.2    KRF79857.1    GAKP01021206    GAKP01021204    JAC37746.1    CH891590    EDW99506.2    CH954177    EDV59924.2    CM000366    CM002911    EDX17051.1    KMY91590.1    AE013599    KX531484    AFH07894.1    ANY27294.1    X76043    AY075534    BT126457    AEE61421.1    HQ384084    ADQ64577.1    KQ971366    EFA10024.1    CH479181    EDW31270.1    PYGN01001308    PSN35799.1    GL441256    EFN64973.1    KT223632    ANU06047.1    KY807074    AVI26883.1    GDHF01006650    JAI45664.1    GDJX01016719    JAT51217.1    BK001460    DAA01508.1    CH963849    EDW74490.1    GDKW01001742    JAI54853.1    GBBI01000523    JAC18189.1    GAHY01001587    JAA75923.1    GBHO01004209    GBRD01016035    GDHC01018782    JAG39395.1    JAG49791.1    JAP99846.1   

Proteomes

UP000218220    UP000005204    UP000007151    UP000283053    UP000053268    UP000053240    + More
UP000037510    UP000075840    UP000000673    UP000007062    UP000075882    UP000075886    UP000075903    UP000002320    UP000069272    UP000075885    UP000027135    UP000075884    UP000075900    UP000075920    UP000235965    UP000076407    UP000075883    UP000075880    UP000092443    UP000092460    UP000008237    UP000075902    UP000005205    UP000095300    UP000095301    UP000192223    UP000005203    UP000091820    UP000078200    UP000092445    UP000037069    UP000009192    UP000008820    UP000069940    UP000249989    UP000001070    UP000008792    UP000030765    UP000268350    UP000192221    UP000007801    UP000002282    UP000008711    UP000000304    UP000000803    UP000007266    UP000008744    UP000245037    UP000000311    UP000007798   

PRIDE

Q09IV5    H9JB47    P47947   

Pfam

PF00036   EF-hand_1        + More
PF13499   EF-hand_7
PF13833   EF-hand_8

Interpro

IPR018247   EF_Hand_1_Ca_BS        + More
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
IPR000483   Cys-rich_flank_reg_C       

SUPFAM

SSF47473   SSF47473       

Gene 3D

3.80.10.10    

CDD

cd00051  EFh

ProteinModelPortal

Q09IV5   A0A2A4K5B6   H9JB47   A0A212ERZ9   A0A3S2NU27   A0A194PKM1   + More
Q6F437   A0A194QLJ1   A0A1Q3G4H1   A0A0L7LUS8   T1E8H1   A0A2M4B012   I7JI16   A0A2Y9D0M9   W5JF97   Q5TR40   A0A2M4C267   A0A182KNV2   A0A182I197   A0A182QZ90   A0A182VES1   A7UU41   A0A336LA48   A7UU42   T1E7R1   Q1A7B3   B0WZL6   B0XEB7   A0A182FHZ0   A0A182PAY5   A0A336MQJ7   A0A067QQT5   A0A182NK07   A0A182RDV0   A0A182WLN3   A0A2J7PQ69   A0A182X5E9   A0A182LZS1   A0A182J6V0   A0A1A9XUL9   A0A1B0AMF5   U5EK38   Q1A7B2   E2BNZ1   A0A182TGU6   A0A1Y1LQU2   A0A158P1M2   A0A1I8PL96   A0A1I8N5B4   A0A1W4WKN6   V9IFG6   I7KJQ1   A0A1A9X4F1   A0A1A9UV94   A0A1B0ABJ8   A0A0L0CHR6   T1PGU9   A0A1I8PLH1   A0A0Q9X9L1   A0A2P0XIE3   Q175S7   A0A182GH33   Q1M0Y3   B4J6G5   B4LPF8   A0A1I8N5A1   A0A0C9RGR6   A0A1L8DNA5   A0A084WL37   Q8WRN4   Q175S8   B4KLT5   A0A023ELU9   A0A1S4FE11   A0A3B0JY19   A0A1W4VJZ2   B3MWV3   A0A0Q9WDI3   A0A034V3A2   B4ISS4   B3N430   B4R4G1   A0A0B4K6P6   P47947   J3JTA1   E5L9V3   D6X095   B4GBH5   A0A2P8XUV8   E2ANM7   A0A1B1RUY0   A0A2P1ANK3   A0A0K8W3K5   A0A1D1Y993   I7LRE4   B4MQV1   A0A0P4VW04   A0A023FAY1   R4G850   A0A0A9ZC59  

PDB

4IL1     E-value=6.52281e-31,     Score=329

KEGG

778498    no KO assigned | (RefSeq) troponin C type IIIa-like protein

GO

GO:0005509   GO:0016021   GO:0019722   GO:0048306   GO:0003009   GO:0005861   GO:0006937   GO:0051015   GO:0005507   GO:0004535   GO:0046872   GO:0006974   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

Length:

153

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.88501

Exp number, first 60 AAs:

0.88501

Total prob of N-in:

0.14354

outside

1  -  153

 

 

Pi

244.112943

Theta

165.034798

Tajima's D

1.073554

CLR

0.724081

CSRT

0.681265936703165

Interpretation

Uncertain