Gene

KWMTBOMO05532  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006735

Annotation

PREDICTED:_ribosome_maturation_protein_SBDS-like_[Plutella_xylostella]

Location

Bomo_Chr10(+):4311458-4313657      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.516 Mitochondrial   Reliability : 1.445 Nuclear   Reliability : 1.573

CDS

ATGTCTAAAATATTTACACCTACGAATCAAATACGTCTCACAAATGTGGCGATCGTAAGATTAAAGAAAGGCGGAAAGAGGTTTGAAATAGCCTGCTACAAGAACAAAGTGCTGTCTTGGCGAAATAAACTAGAAAAAGACATTGATGAAGTTTTACAGACTCATACCGTCTTTACAAATGTTTCCAAAGGACAAGTTGCAAAGAAAGAAGACTTAATAAAGATTTTTGCCAAAGAAGATCAAACGGAGATATGCAAAGAAATTCTGGAGAAAGGAGAACTACAGGTTTCAGACAAAGAAAGACATTCACAGATAGATTCTTTATTTAAAGATATTGCAACTACTGTAGCTGATAAATGTGTCAATCCAGAAACAAAACGACCATATCCAGTTTCTATAATAGAGAAGGCAATCAAAGATGTCCACTTCTCAGTCAATGTAAACAAAAGTGCAAAACAACAAGCTTTAGATGTGATACAAATATTAAAGAATGAAATACCTATTGAAAGAGCTCAAATGAGAGTAAGGATATTACTCACTGGTAAAGATGCTCGGAAAACTAAGGATAAAGTTGTTAAGCTTGCTACAACAGTGGAAGATGAAAACTGGGAATCTGGAACTGCTAACATTGTGTGTCTTATAGATCCTGGCAACTTTAGAAGTTTGGATGAAATGATAAGAACTGAAACAAAGGGCACAGGGCAATTTGAATTATTGAATTTGAAGGAAATGGTTGAAGGTGACCAAGCACTTTAG

Protein

MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKVVKLATTVEDENWESGTANIVCLIDPGNFRSLDEMIRTETKGTGQFELLNLKEMVEGDQAL

Uniprot

H9JB40   A0A2A4KB27   A0A2H1W1J2   S4PV57   A0A1E1W0G3   A0A212EY69   + More
A0A194PEG1   A0A0L7KP88   I4DPQ8   A0A2J7PVY7   A0A1B6II35   A0A1B6FM21   K7J3I9   R4V4E3   A0A1B6LID9   A0A0C9Q0K3   A0A0L7R101   A0A1B0CQC9   A0A1B6E0G9   A0A088AJE8   A0A2A3E845   A0A1B0EZ37   A0A0M8ZNY7   A0A1L8DRY2   A0A195CNA3   E9J1M7   A0A195BKR1   A0A158P3W0   A0A151WS61   F4WKW0   A0A151K0J7   E2AUC7   A0A067QY19   A0A069DQU4   A0A0J7NY94   A0A151J8R6   A0A194QLK0   A0A0A9WXV4   E0VLQ6   J9JZR0   A0A2R7X8X5   A0A2H8TJV5   E2BK20   A0A2S2NJV7   T1HFI4   A0A182GE13   Q175L0   A0A1D1W0M9   A0A182RBR4   A0A182PMC0   A0A182T2T8   A0A182MR76   A0A182W9U3   A0A0P4VJB7   A0A182L289   A0A182WTD3   Q7Q3H9   A0A182K3H1   A0A023ELA4   A0A182YGY6   A0A182TI33   A0A182HVC6   A0A224XRG5   A0A084VP59   A0A2M4AQ01   A0A336KSB1   A0A182NHG5   B0W4Z3   A0A3L8DQU1   A0A0V0GA06   A0A182F4M9   A0A026VX35   A0A2M3Z984   A0A0P5EMG4   A0A2M4BXE3   W5JBF2   A0A0P4XSY2   A0A1X7V953   A0A182J565   A0A1Q3FBN4   A0A023EKN5   A0A1W0X3P2   A0A182Q2Y2   A0A0P5F8Q2   D6WZR6   A0A3B3CTC1   A0A3Q0IMA3   U5EWR6   T1J5D7   C3YDE4   A0A1V9X3I7   A7RWI6   A0A3M6U0U8   A0A369S1W6   B3S4K1   A0A034WV78   W8AVR3   A0A2B4SEA6   A0A1E1XBF2   A0A0C9R1R0  

Pubmed

19121390    23622113    22118469    26354079    26227816    22651552    + More
20075255    21282665    21347285    21719571    20798317    24845553    26334808    25401762    26823975    20566863    26483478    17510324    27649274    27129103    20966253    12364791    14747013    17210077    24945155    25244985    24438588    30249741    24508170    20920257    23761445    18362917    19820115    29451363    18563158    28327890    17615350    30382153    30042472    18719581    25348373    24495485    28503490    26131772   

EMBL

BABH01008551    BABH01008552    NWSH01000001    PCG81108.1    ODYU01005735    SOQ46883.1    + More
GAIX01009118    JAA83442.1    GDQN01010579    JAT80475.1    AGBW02011611    OWR46430.1    KQ459606    KPI91657.1    JTDY01007886    KOB64881.1    AK403724    BAM19898.1    NEVH01020940    PNF20494.1    GECU01021143    JAS86563.1    GECZ01018524    JAS51245.1    KC740904    AGM32728.1    GEBQ01016526    JAT23451.1    GBYB01007393    JAG77160.1    KQ414668    KOC64528.1    AJWK01023413    GEDC01005889    JAS31409.1    KZ288349    PBC27452.1    AJVK01039145    KQ435964    KOX67947.1    GFDF01004885    JAV09199.1    KQ977513    KYN02193.1    GL767674    EFZ13298.1    KQ976453    KYM85315.1    ADTU01008600    KQ982783    KYQ50696.1    GL888206    EGI65202.1    KQ981292    KYN43121.1    GL442815    EFN62984.1    KK853218    KDR09739.1    GBGD01002629    JAC86260.1    LBMM01000854    KMQ97375.1    KQ979480    KYN21253.1    KQ461198    KPJ06249.1    GBHO01030302    GBRD01005570    GDHC01012297    JAG13302.1    JAG60251.1    JAQ06332.1    DS235278    EEB14312.1    ABLF02024416    KK861957    PTY28242.1    GFXV01002609    MBW14414.1    GL448740    EFN83928.1    GGMR01004851    MBY17470.1    ACPB03017989    JXUM01009989    JXUM01013679    KQ560382    KQ560296    KXJ82686.1    KXJ83192.1    CH477398    EAT41792.1    BDGG01000012    GAV05668.1    AXCM01004492    GDKW01001526    JAI55069.1    AAAB01008964    EAA12796.3    GAPW01003595    JAC10003.1    APCN01002505    GFTR01004018    JAW12408.1    ATLV01014978    KE524999    KFB39753.1    GGFK01009518    MBW42839.1    UFQS01000784    UFQS01001380    UFQT01000784    UFQT01001380    SSX06861.1    SSX10593.1    SSX27205.1    DS231840    EDS34559.1    QOIP01000005    RLU22656.1    GECL01001278    JAP04846.1    KK107847    EZA47419.1    GGFM01004311    MBW25062.1    GDIQ01267969    JAJ83755.1    GGFJ01008606    MBW57747.1    ADMH02001962    ETN60180.1    GDIP01247365    LRGB01000512    JAI76036.1    KZS18746.1    GFDL01010059    JAV24986.1    GAPW01003850    JAC09748.1    MTYJ01000019    OQV22135.1    AXCN02002199    GDIQ01258573    JAJ93151.1    KQ971372    EFA09656.1    GANO01000435    JAB59436.1    JH431859    GG666503    EEN61755.1    MNPL01026298    OQR68044.1    DS469547    EDO44174.1    RCHS01002452    RMX47237.1    NOWV01000114    RDD40043.1    DS985249    EDV22481.1    GAKP01000837    JAC58115.1    GAMC01021684    JAB84871.1    LSMT01000105    PFX27373.1    GFAC01002649    JAT96539.1    GBZX01001775    JAG90965.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000037510    UP000235965    + More
UP000002358    UP000053825    UP000092461    UP000005203    UP000242457    UP000092462    UP000053105    UP000078542    UP000078540    UP000005205    UP000075809    UP000007755    UP000078541    UP000000311    UP000027135    UP000036403    UP000078492    UP000053240    UP000009046    UP000007819    UP000008237    UP000015103    UP000069940    UP000249989    UP000008820    UP000186922    UP000075900    UP000075885    UP000075901    UP000075883    UP000075920    UP000075882    UP000076407    UP000007062    UP000075881    UP000076408    UP000075902    UP000075840    UP000030765    UP000075884    UP000002320    UP000279307    UP000069272    UP000053097    UP000000673    UP000076858    UP000007879    UP000075880    UP000075886    UP000007266    UP000261560    UP000079169    UP000001554    UP000192247    UP000001593    UP000275408    UP000253843    UP000009022    UP000225706   

PRIDE

H9JB40   

Pfam

PF09377   SBDS_C        + More
PF01172   SBDS
PF00096   zf-C2H2
PF00651   BTB
PF01926   MMR_HSR1

Interpro

IPR039100   Sdo1/SBDS-like        + More
IPR019783   Ribosome_mat_SBDS_N       
IPR002140   Sdo1/SBDS       
IPR037188   Sdo1/SBDS_central_sf       
IPR018978   Ribosome_mat_SBDS_C       
IPR018023   Ribosome_mat_SBDS_CS       
IPR036786   Ribosome_mat_SBDS_N_sf       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       
IPR035647   EFG_III/V       
IPR005225   Small_GTP-bd_dom       
IPR030388   G_ERA_dom       
IPR005662   GTP-bd_Era       
IPR027417   P-loop_NTPase       
IPR009019   KH_sf_prok-type       
IPR006073   GTP_binding_domain       
IPR015946   KH_dom-like_a/b       

SUPFAM

SSF89895   SSF89895        + More
SSF109728   SSF109728       
SSF57667   SSF57667       
SSF54695   SSF54695       
SSF54980   SSF54980       
SSF54814   SSF54814       
SSF52540   SSF52540       

Gene 3D

1.10.10.900     3.30.1250.10     3.30.300.20    

CDD

cd04163  Era

ProteinModelPortal

H9JB40   A0A2A4KB27   A0A2H1W1J2   S4PV57   A0A1E1W0G3   A0A212EY69   + More
A0A194PEG1   A0A0L7KP88   I4DPQ8   A0A2J7PVY7   A0A1B6II35   A0A1B6FM21   K7J3I9   R4V4E3   A0A1B6LID9   A0A0C9Q0K3   A0A0L7R101   A0A1B0CQC9   A0A1B6E0G9   A0A088AJE8   A0A2A3E845   A0A1B0EZ37   A0A0M8ZNY7   A0A1L8DRY2   A0A195CNA3   E9J1M7   A0A195BKR1   A0A158P3W0   A0A151WS61   F4WKW0   A0A151K0J7   E2AUC7   A0A067QY19   A0A069DQU4   A0A0J7NY94   A0A151J8R6   A0A194QLK0   A0A0A9WXV4   E0VLQ6   J9JZR0   A0A2R7X8X5   A0A2H8TJV5   E2BK20   A0A2S2NJV7   T1HFI4   A0A182GE13   Q175L0   A0A1D1W0M9   A0A182RBR4   A0A182PMC0   A0A182T2T8   A0A182MR76   A0A182W9U3   A0A0P4VJB7   A0A182L289   A0A182WTD3   Q7Q3H9   A0A182K3H1   A0A023ELA4   A0A182YGY6   A0A182TI33   A0A182HVC6   A0A224XRG5   A0A084VP59   A0A2M4AQ01   A0A336KSB1   A0A182NHG5   B0W4Z3   A0A3L8DQU1   A0A0V0GA06   A0A182F4M9   A0A026VX35   A0A2M3Z984   A0A0P5EMG4   A0A2M4BXE3   W5JBF2   A0A0P4XSY2   A0A1X7V953   A0A182J565   A0A1Q3FBN4   A0A023EKN5   A0A1W0X3P2   A0A182Q2Y2   A0A0P5F8Q2   D6WZR6   A0A3B3CTC1   A0A3Q0IMA3   U5EWR6   T1J5D7   C3YDE4   A0A1V9X3I7   A7RWI6   A0A3M6U0U8   A0A369S1W6   B3S4K1   A0A034WV78   W8AVR3   A0A2B4SEA6   A0A1E1XBF2   A0A0C9R1R0  

PDB

2KDO     E-value=1.29332e-79,     Score=752

KEGG

101735480    K14574 ribosome maturation protein SDO1 | (RefSeq) ribosome maturation protein SBDS

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0042256   GO:0003676   GO:0016021   GO:0030851   GO:0031017   GO:0005525   GO:0003723   GO:0042254   GO:0006633   GO:0016747   GO:0005524   GO:0031683   GO:0001664   GO:0007264   GO:0003824  

PANTHER

PTHR10927  

Length:

251

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.06958

outside

1  -  251

 

 

Pi

204.566188

Theta

164.950923

Tajima's D

0.873373

CLR

0

CSRT

0.621018949052547

Interpretation

Possibly Positive selection