Gene

KWMTBOMO05530

Pre Gene Modal

BGIBMGA006734

Annotation

PREDICTED:_3-oxoacyl-[acyl-carrier-protein]_synthase?_mitochondrial_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):4297958-4299547      View in EpiBrowser

Full name

3-oxoacyl-[acyl-carrier-protein] synthase      

Location in the cell

Mitochondrial   Reliability : 2.293

CDS

ATGCGTAAATACAACACATATTTAAATTTAATCCGAAGTATTAATACTATCAATGCCGTTAGACGTAGGGTAGTCGTTACTGGACTGGGTGTCGTATCTCCTTTGGGTACTGGATCTGAATTAGTATGGACAAACATATTGAAGGGAAAATGTGGTATAGTGGCTCTCAATGATGAAGAATACATAAACCTTCCTTGCAGATTAGCTGGGCTTATACCTAGAGAAAAAGATGGTATTGTTGAAAAAGCATTGTCAAAATCTACTCTGAAGTCAATGGCTCCAGCTACATCATTAGCATTGGTTGCTACATCCGAGGCACTTAAAGATGCTAATTGGACGCCTAAAAGTGAACACTGTAAAGAAATGACCGGTGTTGCAATAGGCATGGGTATGATAGATTTAAATGATGTCTGTATCACAAATGAAGCATTAAAAGTTGGCTACAACAAAGTGAGCCCATTCTTTGTTCCTAGAATATTACCAAATATGGCTGCAGGGCACATAAGTATTAAATATGGATTCAGGGGACCTAACCATTCTGTTTCGACAGCTTGTGCAACTGGTGCTCATTCTATAGGGGATGCTTTCAGGTTTATAAAAAATGGTGATGCTGATGTTATGGTATGTGGTGGTGCAGAGGCGTGTATCAGCCCTTTAGCTATCGCAGGTTTCTGTAGACTAAGAGCACTGAGTACTTCATTCAATGGAGAACCTCATAAAGCTTCTAGGCCATTTGATAAAAAAAGAGATGGTTTTGTTATGGGTGAAGGAGCAGCCATATTGATTTTAGAAGAATATGAACATGCTTTCAAAAGGAGTGCTAAAATGTATGCTGAAATTTTAGGATATGGTCTTTCTGGTGATGCTTCTCACATAACTACACCAAGAGAAGATGGAAGTGGAGCTATGTTGTCTATGGCGAGAGCCTTGAAAGATGGCAATTTGCAAAAAGAAGATATAACATATATAAATGCCCATGCAACATCAACCCCGATAGGCGATGGTATTGAATCAACAGCTATTAAGTCATTATTCAAGGAACATGCATTAAAAATATCAGTTTCTTCAACTAAAGGAGCCCATGGACACTTATTAGGTGCTGCTGGAAATTTAGAAGCAATGTTCACAATATTATCATGTTATCATGGTGTCCTGCCACCAACTTTGAACCTTGACGACCCTGTAGACGACTTGTGTTATGTTGCTAAGAATGCGAAAAAGTGGGATCATGAAAAGAGAATTGCATTGAAAAACTCTTTTGGGTTTGGTGGTACTAATGCATCTCTTTGTATTGCTAATATTTTATAA

Protein

MRKYNTYLNLIRSINTINAVRRRVVVTGLGVVSPLGTGSELVWTNILKGKCGIVALNDEEYINLPCRLAGLIPREKDGIVEKALSKSTLKSMAPATSLALVATSEALKDANWTPKSEHCKEMTGVAIGMGMIDLNDVCITNEALKVGYNKVSPFFVPRILPNMAAGHISIKYGFRGPNHSVSTACATGAHSIGDAFRFIKNGDADVMVCGGAEACISPLAIAGFCRLRALSTSFNGEPHKASRPFDKKRDGFVMGEGAAILILEEYEHAFKRSAKMYAEILGYGLSGDASHITTPREDGSGAMLSMARALKDGNLQKEDITYINAHATSTPIGDGIESTAIKSLFKEHALKISVSSTKGAHGHLLGAAGNLEAMFTILSCYHGVLPPTLNLDDPVDDLCYVAKNAKKWDHEKRIALKNSFGFGGTNASLCIANIL

Similarity

Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.

Uniprot

H9JB39   A0A2A4KA58   A0A194QL37   A0A2H1W1C5   A0A0L7LF15   A0A194PKN0   + More
A0A212EY57   A0A067QKQ8   A0A2J7PVY2   A0A2J7PVY9   A0A2P8Y8P2   A0A2P8XAD4   A0A182FQS4   A0A182VLC1   A0A182HTM4   A0A2M4CZ80   A0A2M4CZ76   A0A182XHR4   A0A182LGJ8   Q7QCU6   A0A182W0Q2   A0A182UGG1   A0A2M4BMP8   A0A2M4BMJ8   A0A2M4BMU0   A0A182MN52   A0A182GKQ2   A0A084W011   A0A182JSC4   A0A2M3Z9X5   Q17J59   A0A182SFG7   A0A182Y442   E0VLQ4   B0WB66   A0A182N782   A0A1Q3FIP2   A0A1B6CBB1   A0A0M8ZX40   A0A1B0GQ41   A0A1Y1MG76   A0A0C9Q7S8   W5JGA4   A0A232FDS1   K7IT07   A0A2A3EKA3   A0A195CHY5   E2BJS5   A0A088AQA3   A0A154NY31   A0A0L7QZ06   F4WTL8   A0A3R7MFZ4   A0A158NG31   E2AS13   A0A1B6JI21   A0A026X349   A0A182R4N2   A0A182J3T7   A0A182P280   A0A0Q3MSL4   A0A023FAI5   A0A093PVN3   A0A091MQ55   A0A1J1HUB4   T1HFL6   R0L2N9   A0A0V0GCJ6   A0A224XPJ0   D6X1D1   A0A093NSX6   H0YZA5   A0A218UJA8   A0A091V5V6   A0A091KXP2   H9GEE9   A0A087RK05   A0A091WEU9   E1BYY7   V8NKW2   A0A099YZS5   A0A2P4T2X4   A0A091FM98   A0A2R7X9A9   A0A094KUR4   A0A091EL77   A0A093EXB2   U3IKC5   A0A3L8SYG4   A0A093HZ41   A0A093IWK6   A0A091V0L1   A0A1B6KAN2   A0A0A0ABT9   A0A3M0JW68   A0A2I0MQM4   R4WJP8   A0A091RS25   A0A091JMJ0   A0A091IK08  

Pubmed

19121390    26354079    26227816    22118469    24845553    29403074    + More
20966253    12364791    14747013    17210077    26483478    24438588    17510324    25244985    20566863    28004739    20920257    23761445    28648823    20075255    20798317    21719571    21347285    24508170    30249741    25474469    18362917    19820115    20360741    21881562    15592404    24297900    23749191    30282656    23371554    23691247   

EMBL

BABH01008549    NWSH01000001    PCG81111.1    KQ461198    KPJ06247.1    ODYU01005735    + More
SOQ46881.1    JTDY01001397    KOB73974.1    KQ459606    KPI91655.1    AGBW02011611    OWR46428.1    KK853218    KDR09741.1    NEVH01020940    PNF20495.1    PNF20496.1    PYGN01000803    PSN40628.1    PYGN01021967    PSN28958.1    APCN01000570    GGFL01006455    MBW70633.1    GGFL01006456    MBW70634.1    AAAB01008859    EAA07755.5    GGFJ01005133    MBW54274.1    GGFJ01005134    MBW54275.1    GGFJ01005132    MBW54273.1    AXCM01000194    JXUM01070405    KQ562604    KXJ75504.1    ATLV01019068    KE525259    KFB43555.1    GGFM01004524    MBW25275.1    CH477234    EAT46748.1    DS235278    EEB14310.1    DS231877    EDS42131.1    GFDL01007702    JAV27343.1    GEDC01026713    JAS10585.1    KQ435840    KOX71359.1    AJVK01067532    GEZM01032332    GEZM01032331    JAV84663.1    GBYB01010213    JAG79980.1    ADMH02001605    ETN61849.1    NNAY01000402    OXU28643.1    AAZX01003325    KZ288232    PBC31461.1    KQ977721    KYN00346.1    GL448636    EFN84050.1    KQ434782    KZC04585.1    KQ414685    KOC63839.1    GL888341    EGI62439.1    QCYY01001784    ROT75343.1    ADTU01014942    GL442209    EFN63787.1    GECU01008964    JAS98742.1    KK107020    QOIP01000004    EZA62446.1    RLU23809.1    LMAW01000781    KQK85415.1    GBBI01000292    JAC18420.1    KL671006    KFW80838.1    KK834714    KFP79175.1    CVRI01000021    CRK91663.1    ACPB03017989    KB744720    EOA94537.1    GECL01000332    JAP05792.1    GFTR01006066    JAW10360.1    KQ971372    EFA09506.1    KL225063    KFW67216.1    ABQF01013925    MUZQ01000272    OWK53678.1    KL410685    KFQ98189.1    KK758263    KFP44045.1    AAWZ02026560    KL226409    KFM13809.1    KK735432    KFR14069.1    AADN05000034    AZIM01003411    ETE62167.1    KL886993    KGL74388.1    PPHD01010901    POI30705.1    KL447195    KFO70733.1    KK861957    PTY28241.1    KL267204    KFZ62365.1    KK718644    KFO57826.1    KK377155    KFV46534.1    ADON01134161    QUSF01000003    RLW11521.1    KL206987    KFV88028.1    KL216727    KFV71081.1    KK468630    KFQ83328.1    GEBQ01031464    JAT08513.1    KL871161    KGL90963.1    QRBI01000123    RMC05216.1    AKCR02000004    PKK31967.1    AK417805    BAN21020.1    KK931410    KFQ45238.1    KK501122    KFP12891.1    KL218796    KFP08627.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000053268    UP000007151    + More
UP000027135    UP000235965    UP000245037    UP000069272    UP000075903    UP000075840    UP000076407    UP000075882    UP000007062    UP000075920    UP000075902    UP000075883    UP000069940    UP000249989    UP000030765    UP000075881    UP000008820    UP000075901    UP000076408    UP000009046    UP000002320    UP000075884    UP000053105    UP000092462    UP000000673    UP000215335    UP000002358    UP000242457    UP000078542    UP000008237    UP000005203    UP000076502    UP000053825    UP000007755    UP000283509    UP000005205    UP000000311    UP000053097    UP000279307    UP000075900    UP000075880    UP000075885    UP000051836    UP000053258    UP000183832    UP000015103    UP000007266    UP000054081    UP000007754    UP000197619    UP000053283    UP000001646    UP000053286    UP000053605    UP000000539    UP000053641    UP000053760    UP000052976    UP000016666    UP000276834    UP000053584    UP000053875    UP000053858    UP000269221    UP000053872    UP000053119    UP000054308   

PRIDE

H9JB39   

Pfam

PF00109   ketoacyl-synt        + More
PF02801   Ketoacyl-synt_C

Interpro

IPR016039   Thiolase-like        + More
IPR014030   Ketoacyl_synth_N       
IPR020841   PKS_Beta-ketoAc_synthase_dom       
IPR000794   Beta-ketoacyl_synthase       
IPR017568   3-oxoacyl-ACP_synth-2       
IPR014031   Ketoacyl_synth_C       
IPR018201   Ketoacyl_synth_AS       
IPR002155   Thiolase       

SUPFAM

SSF53901   SSF53901       

Gene 3D

3.40.47.10    

ProteinModelPortal

H9JB39   A0A2A4KA58   A0A194QL37   A0A2H1W1C5   A0A0L7LF15   A0A194PKN0   + More
A0A212EY57   A0A067QKQ8   A0A2J7PVY2   A0A2J7PVY9   A0A2P8Y8P2   A0A2P8XAD4   A0A182FQS4   A0A182VLC1   A0A182HTM4   A0A2M4CZ80   A0A2M4CZ76   A0A182XHR4   A0A182LGJ8   Q7QCU6   A0A182W0Q2   A0A182UGG1   A0A2M4BMP8   A0A2M4BMJ8   A0A2M4BMU0   A0A182MN52   A0A182GKQ2   A0A084W011   A0A182JSC4   A0A2M3Z9X5   Q17J59   A0A182SFG7   A0A182Y442   E0VLQ4   B0WB66   A0A182N782   A0A1Q3FIP2   A0A1B6CBB1   A0A0M8ZX40   A0A1B0GQ41   A0A1Y1MG76   A0A0C9Q7S8   W5JGA4   A0A232FDS1   K7IT07   A0A2A3EKA3   A0A195CHY5   E2BJS5   A0A088AQA3   A0A154NY31   A0A0L7QZ06   F4WTL8   A0A3R7MFZ4   A0A158NG31   E2AS13   A0A1B6JI21   A0A026X349   A0A182R4N2   A0A182J3T7   A0A182P280   A0A0Q3MSL4   A0A023FAI5   A0A093PVN3   A0A091MQ55   A0A1J1HUB4   T1HFL6   R0L2N9   A0A0V0GCJ6   A0A224XPJ0   D6X1D1   A0A093NSX6   H0YZA5   A0A218UJA8   A0A091V5V6   A0A091KXP2   H9GEE9   A0A087RK05   A0A091WEU9   E1BYY7   V8NKW2   A0A099YZS5   A0A2P4T2X4   A0A091FM98   A0A2R7X9A9   A0A094KUR4   A0A091EL77   A0A093EXB2   U3IKC5   A0A3L8SYG4   A0A093HZ41   A0A093IWK6   A0A091V0L1   A0A1B6KAN2   A0A0A0ABT9   A0A3M0JW68   A0A2I0MQM4   R4WJP8   A0A091RS25   A0A091JMJ0   A0A091IK08  

PDB

2C9H     E-value=3.59505e-126,     Score=1156

KEGG

101747135    K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] | (RefSeq) 3-oxoacyl-[acyl-carrie

PATHWAY

00061    Fatty acid biosynthesis - Bombyx mori (domestic silkworm)
00780    Biotin metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0006633   GO:0016747   GO:0016740   GO:0004315   GO:0005739   GO:0051792   GO:0051790   GO:0006637   GO:0005829   GO:0003824   GO:0008152   GO:0005524   GO:0031683   GO:0001664   GO:0005525   GO:0007264  

PANTHER

PTHR11712  

Length:

435

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.52743999999999

Exp number, first 60 AAs:

9.43064999999999

Total prob of N-in:

0.43928

outside

1  -  435

 

 

Pi

123.819199

Theta

183.113402

Tajima's D

-0.954193

CLR

2.661277

CSRT

0.145542722863857

Interpretation

Possibly Positive selection