Gene

KWMTBOMO05527

Annotation

PREDICTED:_probable_tRNA_(uracil-O(2)-)-methyltransferase_[Plutella_xylostella]

Location

Bomo_Chr10(+):4275258-4278187      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.881

CDS

ATGATTGTCTTGAATGCACACTGTGATGATGAAAACTCAAAATCATACATGTGGCTCAAGAATAAGCTCTTACCACAGTTTATCAAATGGACAACTGAAACTGAAAGCAATAATGGAAAGAAGAAAATCTGCACAGCGTCTTTAACTTTAGTATCAAGTAGTAAATATTTTGAAAAATATAATGAACTAAAACTCAAGTATGGGAAAGACTTAGTTAAGATTTGGCCAGAATGTACTGATCCTACAAAATTTGTATATGAAGATGTTGCTATTGCAACTTATTTGCTCCTGCTTTGGGAAGACCGAAGTTTAGTAAAGAAACAAACATTTGTGGATCTTGGATGTGGCAATGGTTTATTGGTGTATATATTATGTAAAGAGGGCCATGCAGGACTTGGAATTGATGTAAGAAAAAGAGAAATTTGGGATATGTATCCGCCTGAGGTAAAATTGAAGATGAAAACTATTGTACCCTCAGAAAGCAATCTGTTTCCAAATGCTGATTGGATTATTGGTAACCATTCTGATGAATTGACACCTTGGATTCCTGTCATAGCAGCTAAGAGTTCTTACAAATGCAACTTTTTCCTATTGCCATGTTGTGCATTCAACTTTGATGGGTCCAAATACCAACGAGTGGATTCTAAAAAAAGTCAATACACTGAATATTTAGAACACGTAAAGAAAATTTGTGAAGATTGTGGTTTTATAACTGATCTTGACAGACTTAAAATACCAAGTACGAAGAGAATATGTTTAGTAAGCAATGGTCGAATGTACAGTCCAGACACTTATAAAGACAGTATTAATAAAATTTCTAAAATTTTCAAAGAGAAACATGCACGTGGTAATGTAGAAAATGACACCTGGTTGGCAGATTTTAAAGCTAGAGAATCTACACAGAAAGTACGGAATTGTACACAGTTGGATAAAAACCTAATAGAGTCAATAGTAAAAATAGTGACAGACTGTTTGCTTGAAGGGTGCAGTAAAGACTGTAATGAACAATGGTCTGTTGGAAAAATTGTTGAAATAAGTGAACTAGTTTCACTAATTCCAAAGCAAAATCTTATTAAACTTAAATCTGAATGTGGGGGTTTGCAAACTTTATTAAAGAACAATCATAACATATTTCTTGTTTCTGGTGGTAAAGTGCAGTTGAGGTATCCTAAAACAGTAGACCAAGTGATTACTATTCAAAAGAGACAAAAAATAATTGACACAAAAATACAAGTAAAGCCTTGCTGGTTCCACAACAACCATCCTCAAGGGTGTCCCCTGTCTAGCATCAATTGTAGCTTCCTACACAGTAAAGGATAA

Protein

MIVLNAHCDDENSKSYMWLKNKLLPQFIKWTTETESNNGKKKICTASLTLVSSSKYFEKYNELKLKYGKDLVKIWPECTDPTKFVYEDVAIATYLLLLWEDRSLVKKQTFVDLGCGNGLLVYILCKEGHAGLGIDVRKREIWDMYPPEVKLKMKTIVPSESNLFPNADWIIGNHSDELTPWIPVIAAKSSYKCNFFLLPCCAFNFDGSKYQRVDSKKSQYTEYLEHVKKICEDCGFITDLDRLKIPSTKRICLVSNGRMYSPDTYKDSINKISKIFKEKHARGNVENDTWLADFKARESTQKVRNCTQLDKNLIESIVKIVTDCLLEGCSKDCNEQWSVGKIVEISELVSLIPKQNLIKLKSECGGLQTLLKNNHNIFLVSGGKVQLRYPKTVDQVITIQKRQKIIDTKIQVKPCWFHNNHPQGCPLSSINCSFLHSKG

Similarity

Belongs to the complex I LYR family.

Uniprot

A0A2A4KBC0   A0A2H1W1D3   A0A0L7L501   A0A3S2NIR1   A0A212EY67   A0A194PE88   + More
A0A194QMS2   A0A158NNA7   E2B3H2   E9IUF5   A0A195AV02   A0A151XA85   A0A151IT28   A0A195CS06   F4WLH8   A0A026WVH7   A0A0J7L5X8   K7IN52   A0A232F846   W5JB33   A0A182G8G1   A0A0T6BE59   A0A182FDT0   A0A182TD64   A0A182JYY8   Q7Q535   E2AJ27   A0A067RAV4   A0A2J7QDP6   A0A182I4P3   A0A087ZWJ4   A0A084WK01   A0A182RJN8   A0A182UQM1   A0A182X4P6   A0A182PMH5   A0A310SIE1   A0A2A3EL51   V9IID9   A0A182LX36   A0A1B6GY60   Q16HA1   A0A182N977   A0A182QM27   A0A182IU91   A0A154P0R0   A0A182LK68   A0A182WBK6   A0A195FWB2   A0A3P9HGH9   A0A3P9KMX4   A0A182Y2E5   A0A3S2NZL0   H2LNP4   A0A0L7QVF0   A0A3P8UL25   A0A3B3DDY9   A0A1B6MUQ7   A0A3B5B769   A0A3Q1GDU6   A0A1B6DAG1   A0A2U9B173   A0A3Q3L7M4   A0A3P9J1K3   I3J089   A0A1S3N6X9   A0A3B4FEN2   A0A3P8NMZ8   A0A3P9D3K1   W5KVK8   G3Q6Z6   A0A0A9Z0V6   A0A0K8SGC5   A0A3B3IKC0   A0A3Q2WK78   A0A3B4VAH8   A0A3Q1AK00   H2TTI4   A0A3P8T3S3   A0A3Q3JD81   A0A1W4XCV2   A0A3Q3GU02   A0A3Q3QKJ3   A0A3Q3J7I7   A0A0P4VVC2   A0A3Q3J7U2   A0A3B3VFU3   A0A087XL22   A0A3B3WFT0   M4AN05   A0A3P9PG75   A0A3B4XIB4   A0A1A8NX50   A0A3Q2CKX7   E9QD66   A0A3R7PCJ4   A0A0F8BV78   A0A1A8MG19   T1HP40   A0A3P9A416  

Pubmed

26227816    22118469    26354079    21347285    20798317    21282665    + More
21719571    24508170    30249741    20075255    28648823    20920257    23761445    26483478    12364791    14747013    17210077    24845553    24438588    17510324    20966253    17554307    25244985    24487278    29451363    25186727    25329095    25401762    26823975    21551351    23542700    23594743    25835551    25069045   

EMBL

NWSH01000001    PCG81103.1    ODYU01005735    SOQ46889.1    JTDY01002870    KOB70568.1    + More
RSAL01000081    RVE48593.1    AGBW02011611    OWR46438.1    KQ459606    KPI91666.1    KQ461198    KPJ06260.1    ADTU01021199    GL445346    EFN89724.1    GL765974    EFZ15784.1    KQ976738    KYM75855.1    KQ982351    KYQ57285.1    KQ981037    KYN10159.1    KQ977372    KYN03277.1    GL888208    EGI64914.1    KK107109    QOIP01000008    EZA59094.1    RLU19886.1    LBMM01000586    KMQ98026.1    NNAY01000764    OXU26629.1    ADMH02001746    ETN61211.1    JXUM01151982    KQ571343    KXJ68193.1    LJIG01001341    KRT85599.1    AAAB01008960    EAA11433.4    GL439932    EFN66559.1    KK852772    KDR16845.1    NEVH01015817    PNF26712.1    APCN01002341    ATLV01024090    KE525349    KFB50545.1    KQ763441    OAD55102.1    KZ288215    PBC32440.1    JR047417    AEY60412.1    AXCM01001604    GECZ01002418    JAS67351.1    CH478188    EAT33623.1    AXCN02000557    KQ434792    KZC05437.1    KQ981208    KYN44733.1    CM012454    RVE60530.1    KQ414727    KOC62600.1    GEBQ01000312    JAT39665.1    GEDC01014630    JAS22668.1    CP026244    AWO97617.1    AERX01055572    AERX01055573    GBHO01004697    GBHO01004696    GDHC01010239    GDHC01000954    GDHC01000952    JAG38907.1    JAG38908.1    JAQ08390.1    JAQ17675.1    JAQ17677.1    GBRD01013996    JAG51830.1    GDRN01093374    JAI59902.1    AYCK01004350    HAEG01005160    SBR73434.1    BX088542    QCYY01002901    ROT66706.1    KQ042189    KKF18254.1    HAEF01014568    SBR55727.1    ACPB03008068   

Proteomes

UP000218220    UP000037510    UP000283053    UP000007151    UP000053268    UP000053240    + More
UP000005205    UP000008237    UP000078540    UP000075809    UP000078492    UP000078542    UP000007755    UP000053097    UP000279307    UP000036403    UP000002358    UP000215335    UP000000673    UP000069940    UP000249989    UP000069272    UP000075902    UP000075881    UP000007062    UP000000311    UP000027135    UP000235965    UP000075840    UP000005203    UP000030765    UP000075900    UP000075903    UP000076407    UP000075885    UP000242457    UP000075883    UP000008820    UP000075884    UP000075886    UP000075880    UP000076502    UP000075882    UP000075920    UP000078541    UP000265200    UP000265180    UP000076408    UP000001038    UP000053825    UP000265120    UP000261560    UP000261400    UP000257200    UP000246464    UP000261640    UP000005207    UP000087266    UP000261460    UP000265100    UP000265160    UP000018467    UP000007635    UP000264840    UP000261420    UP000257160    UP000005226    UP000265080    UP000261600    UP000192223    UP000261660    UP000261500    UP000028760    UP000261480    UP000002852    UP000242638    UP000261360    UP000265020    UP000000437    UP000283509    UP000015103    UP000265140   

Pfam

PF07757   AdoMet_MTase        + More
PF05347   Complex1_LYR

Interpro

IPR000571   Znf_CCCH        + More
IPR029063   SAM-dependent_MTases       
IPR011671   tRNA_uracil_MeTrfase       
IPR008011   Complex1_LYR       
IPR007110   Ig-like_dom       
IPR036397   RNaseH_sf       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF53335   SSF53335        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A2A4KBC0   A0A2H1W1D3   A0A0L7L501   A0A3S2NIR1   A0A212EY67   A0A194PE88   + More
A0A194QMS2   A0A158NNA7   E2B3H2   E9IUF5   A0A195AV02   A0A151XA85   A0A151IT28   A0A195CS06   F4WLH8   A0A026WVH7   A0A0J7L5X8   K7IN52   A0A232F846   W5JB33   A0A182G8G1   A0A0T6BE59   A0A182FDT0   A0A182TD64   A0A182JYY8   Q7Q535   E2AJ27   A0A067RAV4   A0A2J7QDP6   A0A182I4P3   A0A087ZWJ4   A0A084WK01   A0A182RJN8   A0A182UQM1   A0A182X4P6   A0A182PMH5   A0A310SIE1   A0A2A3EL51   V9IID9   A0A182LX36   A0A1B6GY60   Q16HA1   A0A182N977   A0A182QM27   A0A182IU91   A0A154P0R0   A0A182LK68   A0A182WBK6   A0A195FWB2   A0A3P9HGH9   A0A3P9KMX4   A0A182Y2E5   A0A3S2NZL0   H2LNP4   A0A0L7QVF0   A0A3P8UL25   A0A3B3DDY9   A0A1B6MUQ7   A0A3B5B769   A0A3Q1GDU6   A0A1B6DAG1   A0A2U9B173   A0A3Q3L7M4   A0A3P9J1K3   I3J089   A0A1S3N6X9   A0A3B4FEN2   A0A3P8NMZ8   A0A3P9D3K1   W5KVK8   G3Q6Z6   A0A0A9Z0V6   A0A0K8SGC5   A0A3B3IKC0   A0A3Q2WK78   A0A3B4VAH8   A0A3Q1AK00   H2TTI4   A0A3P8T3S3   A0A3Q3JD81   A0A1W4XCV2   A0A3Q3GU02   A0A3Q3QKJ3   A0A3Q3J7I7   A0A0P4VVC2   A0A3Q3J7U2   A0A3B3VFU3   A0A087XL22   A0A3B3WFT0   M4AN05   A0A3P9PG75   A0A3B4XIB4   A0A1A8NX50   A0A3Q2CKX7   E9QD66   A0A3R7PCJ4   A0A0F8BV78   A0A1A8MG19   T1HP40   A0A3P9A416  

KEGG

101738223    K15447 tRNASer (uridine44-2'-O)-methyltransferase [EC:2.1.1.211] | (RefSeq) probable tRNA (uracil-O(

GO

GO:0046872   GO:0008168   GO:0016300   GO:0030488   GO:0003676   GO:0043169   GO:0005515   GO:0008270   GO:0005524   GO:0031683   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

PANTHER

PTHR21210  

Length:

439

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01065

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00600

outside

1  -  439

 

 

Pi

0.731819

Theta

46.937774

Tajima's D

-2.385448

CLR

21.068866

CSRT

0.0015999200039998

Interpretation

Possibly Positive selection