Gene

KWMTBOMO05524  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006733

Annotation

PREDICTED:_fatty_acid-binding_protein_12-like_[Amyelois_transitella]

Location

Bomo_Chr10(+):4224618-4226520      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.516

CDS

ATGCCGTCAATCGCTGGAAAGTACCAGCACTACAAGAACGAAGACATTGATGATTATTTCAGTGCGGTCGGTGTACCATTTATGGGTCGAAAAATGATGTCAATGTCATCACCATTAATGGAAATTTCAATTGATGGGGATACTATGACTATAAAAAATTCATCATTGTTACGAACAGTAGAACACAAATTTAAGCTTGGCGAAGAATATGAAGAGAAAATGCCCAATTCCATTATAAAAAGTGTCACAACAATCACCAATGATAGTGAAATGGAGACAAAATCTGTTATACCTGACACAGGAGCTAAATGTGGACGTCACTATCAGTTTACTGATGAAGAATGTATTGTGACTCTCACACATGAAAATGCAAGTGTTTCTGGGAAACGCTACTTTCGCAGAGTGCAGTAG

Protein

MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDTGAKCGRHYQFTDEECIVTLTHENASVSGKRYFRRVQ

Similarity

Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.

Uniprot

H9JB38   S4PR71   A0A3S2L9C7   A0A2A4K9X7   A0A2A4KAT4   A0A194QRU9   + More
A0A1E1WR56   A0A194PG40   A0A2H1W239   A0A212EK27   I4DL17   A0A1E1VZL1   D6X2H6   A0A0N1ITP0   A0A2P8ZJ00   A0A087ZPP1   S4S5K9   A0A232FGE3   K7IQ80   A0A1W4WFN5   A0A2A3EG77   A0A0L7R166   U4UEX6   N6U9W4   A0A1B6EE81   A0A0P5DJW0   A0A0P5T9I6   A0A0P4ZWH9   A0A0P6AP56   A0A1D2N5D4   A0A0P6D1A5   A0A226DEB1   A0A0P5L708   A0A0P5HPX8   A0A0P5IR43   A0A0P5KTU4   A0A0P6H9Q8   A0A0N8A7S3   R7TGQ9   A0A2I9LNZ4   A0A0U2KD12   D6WBV4   A0A0U2UEZ0   E2BED2   B0KZJ6   A0A0U2LEV9   A0A3R7LUW6   V5H4N0   A0A0U2TK48   A0A0U2V2N8   A0A0U2T5Y2   A0A1D1UF68   A0A158P1Y8   A0A1W7RAI2   R4WCK5   A0A0U2T8A5   B0KZK2   A0A0J7KMQ5   A0A162N623   R4WCU0   A7XZL4   Q177Y4   T1E383   Q66RP5   A0A1Y1MPR8   B3P4J3   I3MNX9   A0A336JZJ3  

Pubmed

19121390    23622113    26354079    22118469    22651552    18362917    + More
19820115    29403074    28648823    20075255    23537049    27289101    23254933    29248469    26621068    20798317    27649274    21347285    23691247    27071652    17510324    24330624    15879018    28004739    17994087   

EMBL

BABH01008537    GAIX01014988    JAA77572.1    RSAL01000081    RVE48590.1    NWSH01000001    + More
PCG81095.1    PCG81096.1    KQ461198    KPJ06266.1    GDQN01001657    JAT89397.1    KQ459606    KPI91669.1    ODYU01005735    SOQ46892.1    AGBW02014334    OWR41847.1    AK401985    BAM18607.1    GDQN01010887    JAT80167.1    KQ971372    EFA10745.2    KQ435763    KOX75408.1    PYGN01000041    PSN56475.1    HQ828078    HQ828080    AET36540.1    AET36541.1    NNAY01000281    OXU29528.1    KZ288254    PBC30718.1    KQ414668    KOC64588.1    KB632328    ERL92529.1    APGK01043278    APGK01043279    KB741014    ENN75407.1    GEDC01001081    JAS36217.1    GDIP01156349    LRGB01002481    JAJ67053.1    KZS07417.1    GDIP01129164    JAL74550.1    GDIP01211405    JAJ11997.1    GDIP01040173    JAM63542.1    LJIJ01000205    ODN00478.1    GDIP01007204    JAM96511.1    LNIX01000020    OXA43912.1    GDIQ01179334    JAK72391.1    GDIQ01224870    JAK26855.1    GDIQ01234869    JAK16856.1    GDIQ01179333    JAK72392.1    GDIQ01022674    JAN72063.1    GDIP01174153    JAJ49249.1    AMQN01013196    KB310036    ELT92677.1    GFWZ01000120    MBW20110.1    KT754480    ALS04314.1    KQ971315    EEZ99309.1    KT754479    KT754481    ALS04315.1    GL447768    EFN85977.1    DQ979802    ABL09307.1    KT754478    ALS04312.1    QCYY01003397    ROT63697.1    GALX01000698    JAB67768.1    KT754735    ALS04569.1    KT755010    ALS04844.1    KT755063    ALS04897.1    BDGG01000001    GAU88111.1    ADTU01006917    GFAH01000229    JAV48160.1    AK416948    BAN20163.1    KT755062    ALS04896.1    DQ979808    ABL09313.1    LBMM01005278    KMQ91658.1    AZHF01000004    OAA76109.1    AK416989    BAN20204.1    EU106629    ABU97480.1    CH477369    EAT42473.1    GALA01000600    JAA94252.1    AY710432    AAU11502.1    GEZM01024990    JAV87652.1    CH954181    EDV49508.1    AGTP01066622    UFQS01000022    UFQT01000022    SSW97581.1    SSX17967.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000053105    UP000245037    UP000005203    UP000215335    UP000002358    UP000192223    UP000242457    UP000053825    UP000030742    UP000019118    UP000076858    UP000094527    UP000198287    UP000014760    UP000008237    UP000283509    UP000186922    UP000005205    UP000036403    UP000076881    UP000008820    UP000008711    UP000005215   

PRIDE

H9JB38   

Pfam

PF00061   Lipocalin

Interpro

IPR031259   ILBP        + More
IPR012674   Calycin       
IPR000566   Lipocln_cytosolic_FA-bd_dom       
IPR000463   Fatty_acid-bd       
IPR031281   CRABP2       

SUPFAM

SSF50814   SSF50814       

Gene 3D

2.40.128.20    

ProteinModelPortal

H9JB38   S4PR71   A0A3S2L9C7   A0A2A4K9X7   A0A2A4KAT4   A0A194QRU9   + More
A0A1E1WR56   A0A194PG40   A0A2H1W239   A0A212EK27   I4DL17   A0A1E1VZL1   D6X2H6   A0A0N1ITP0   A0A2P8ZJ00   A0A087ZPP1   S4S5K9   A0A232FGE3   K7IQ80   A0A1W4WFN5   A0A2A3EG77   A0A0L7R166   U4UEX6   N6U9W4   A0A1B6EE81   A0A0P5DJW0   A0A0P5T9I6   A0A0P4ZWH9   A0A0P6AP56   A0A1D2N5D4   A0A0P6D1A5   A0A226DEB1   A0A0P5L708   A0A0P5HPX8   A0A0P5IR43   A0A0P5KTU4   A0A0P6H9Q8   A0A0N8A7S3   R7TGQ9   A0A2I9LNZ4   A0A0U2KD12   D6WBV4   A0A0U2UEZ0   E2BED2   B0KZJ6   A0A0U2LEV9   A0A3R7LUW6   V5H4N0   A0A0U2TK48   A0A0U2V2N8   A0A0U2T5Y2   A0A1D1UF68   A0A158P1Y8   A0A1W7RAI2   R4WCK5   A0A0U2T8A5   B0KZK2   A0A0J7KMQ5   A0A162N623   R4WCU0   A7XZL4   Q177Y4   T1E383   Q66RP5   A0A1Y1MPR8   B3P4J3   I3MNX9   A0A336JZJ3  

PDB

3PP6     E-value=8.66722e-11,     Score=154

KEGG

101746635    no KO assigned | (RefSeq) fatty acid-binding protein-like

GO

GO:0008289   GO:0016021   GO:0005654   GO:0005829   GO:0035115   GO:0048385   GO:0042573   GO:0048672   GO:0001972  

PANTHER

PTHR11955   PTHR11955:SF60  

Length:

136

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0165

Exp number, first 60 AAs:

0.0165

Total prob of N-in:

0.34736

outside

1  -  136

 

 

Pi

188.802304

Theta

188.340641

Tajima's D

0.082142

CLR

166.800297

CSRT

0.385430728463577

Interpretation

Possibly Positive selection