SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05515  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006728
Annotation
PREDICTED:_E3_ubiquitin-protein_ligase_Bre1_isoform_X2_[Plutella_xylostella]
Location
Bomo_Chr10(+):4016223-4033485      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.459
 

Sequence

CDS
ATGAGTAATGCTGTTTATTTTGTTGGCGTAGACGTGGGTTCAAGCAGCGTTCGTGCTGCACTTGTGGATAACAGAGGACATGTACATAAAACTTCGGTGCGAGAAATTTTAACTTGGAAACCCAAATATAACTTTTATGAACAATCTTCTGAAAATATTTGGAATCGTTCGCTAGAAGTAATTAAAGATGTTGTTAGCGGTACAGATGCAGCTAATATTAAAGGCATAGGCTTTGATGCTACATGCTCATTGGTTGCCTTAGACAAAAACTTCAATGCTATTGCTGTGAGTGATTCAAATAACAATGATCAGAATGTGATAATGTGGATGGACCACCGAGCCTACAATGAAGCAAATGCAATAAATAAAACAAATCACACAGTCCTTAAGTATGTAGGTGGAAAAGTAAGTTTAGAAATGCAAATGCCCAAGTTGCTGTGGCTGAAAAACAATTTGTCGGAAAAGTGGTCACAATATGGACACTTTTTTGACCTTCCTGACTTTTTAACCTGGAAAGCTACAGGCTCCATGAGTCGGTCACTGTGTTCTTTAGTTTGTAAGTGGAATTATGAATGTTCAGCCAGAAACAAACAAGGATGGAATCTAGATTTTTTGCATGAGATTGGGTTAAATGACTTGGCTGATGACAATTATTTCAAGATTGGCAACAAAGTGTTGATGCCTGGAGAATATTGTGGGGGTCTAACTAATGATGTAGCCTGTATCGTTGGCTTAAAAACAGGTACTCCAGTGGCGACATCAATAATAGATGCACATGCAGGTGGTCTCGGTATGATTGGGGCCAGAGCACAAGGCATTGACAGTGATAAGTCATCACGCCTTTGTCTTATTTGTGGTTCGTCCACCTGCCACATGGCTGTGAATAAAGATGCTGTTTTAGTGGAAGGTGTATGGGGCCCATACTATAGTGCCATGGTTCCTAACATGTGGTTGAATGAAGCTGGCCAAAGTGCTTCAGGAATTTTATTAGATCACATTATAGAGAGCCATCCAGCTGGTAGTGCTTTATTAAAAACCAAATCATCTGGGGAAATACGTCGTCACCTAAGGGATATTCTATTGGAAATGGCAAAAAAAGAGGGTCTCAGTAGCATTGATTTCCTAACCAAGGAGGTTCACGTGTGGCCAGATTTTCATGGTAACCGATCGCCCCTTGCAGATCCTACTATGCGAGGCATGATGACTGGACTCACAATAAACTCCAATGAAGAAAATCTAGCCGTCTTATATCTTGCCACATTACAAGCTTTATCGTATGGTACGAGACACATCATCGACGCCTTGATACAAGCAGGCTATAAACCTTTTAAATCATTGTTAGTGTGTGGTGGCATTATAAAGGATCCGTTGTTCGTATCCACACAAGCTGATGCTGCAAGTCTGCCAATACTGCAGCCTCATGAAAAAGATTCGGTTCTGGTTGGTTCAGCAATATTAGGTGCCTGTGCTTCTCAATATTTCCCGAATATTCAAGATGCCATACACAATATGGGCGGTACAGCTGATGTGATTCAGCCTGATTCAAATACGAAATTATATCATGACAAAAAATACAGGATATTTCTGAAAATGTACCAAGACCAGTTGGAATACAGATCAATAATGAATTCTCAAAAAACAATATTCAAAATTGTCATTATTGACAAGCAGGTTAAAATGTCTAAGCGAGGTGCCGATGAAGGTGGCAACGGCAGTAGCCAGCCACCGATCAAGAAGGTTCATTTCGAACCCCATCTTATAGGACCTGTTTCTACCTTGGAAGAAATGGACATTAAAGTTTTACAGTTTCAAAACAAAAAATTAGCTCAGAGGATAGAACAACGACATAGATGTGAAGCAGAGCTCAGGGCTCGAATAGAGCAGCTTGAGAAACGTCAAACACAAGACGATGCTGTCCTCTGTGTAGTTAACCGTTACTGGAATCTCTTGAATGAAGACATCAGAGTTTTACTGCAGCGTTTTGATGCAGAAACAGCTGATGAATCAGAAAACAAAAATGAGAATGAAGCCACAACATCATTTTTAATGCAGCTGTCAACATGGGACAAGGAAGAGTTAGATGCACAATTGGCTAACAGAGTGCAAGTTAGCAAAAGAGCCGTTGCTAAAGTATTACAAGCATTTGATCGCCTACAACAGAGAAATGATAAAATTTGGCGTGCAATCAAGGGTGATGGAGACGAAGGTGGGGCAGCCCCATCGTTGGATGCGACAGTTCGTGCAGCCAACGAGGAAGTGACGGCCGAAAATCGACGTCTGCAGGGACTTTGCACCGCGCTACACGAGGCGCACCACGCCATGACGTTGCGAGTCGCCGCATTACATGACTCCCTCAACAGCCGGGATACTGAGAATGCTGAGCTCAAAAATCAAATTGATGACTTGCAGTACGAATTGATGAAGGTTCGATCCCGCAACGACAAGCTCGAAAACCACTTGGCCGAGGCGATAGAGAAGCTGAAGAGTTACCATCAGTCGGGCGTGACCACGGCGGCCAGTGCTCCCGCGCACTCGGGCGCCGCCGCCGCCAAGCTTGAGGACGTCGCCGCCGAGCTCGAGGAGCAACGGGAGCTGGCCAACAATCGCCTCGCCGAACTCGACCGACTGCATCGCCAGCATCGGGACACGCTCAAGGAAGTCGAAAAACTTAAGATGGACATCCGACAACTGCCTGAGTCAGTTATAGTAGAGACTACAGAATACAAATGCCTGCAGAGTCAGTTCTCGGTCCTTTACAATGAGTCTATGCAGATGAAGACAGCTTTGGATGAAACACGACTCCAGTTGCAGAACGCTAAGAACTTGCACATGCGACAGATTGAAATGATGGAGAGTGAAGAATTATCGCGTCAAAAAGCGCTCCGAGCAGAAATGATTCAGTTGGAGGATGTATTGGGGCAGTTGCGAAAAGAGTATGAGATGCTGCGCATAGAATTCGAGCAGAACTTAGCCGCCAACGAACAAACGGGACCCATCAACAGGGAGATGCGACATCTCATTACTTCCCTGCAGAATCACAACCAACAACTGAAAGGCGAGGTACATCGTTACAAGAGGAAATATAAGGACACCAGCCAAGAACTAAATAAGGCTCGCAAAGAGGTGGAGGAGGCCAACACTCGTGGCGGAGAGCGCGGCGACGAGAAGCCCCTCACTGTCAAGAAGGAAGAACCCGACCCCGAGGGCGATGACGTCACTTGCGGCAACAGCGCGGGCGAGACGAAGTTGCCTCTCTCCAAAGATCACGGCCGCGCCAAGATGCAGGAGCAGGAACAAATAATCAAGGATCTCAAACAACAATTGAAAAAAGCAGTGAATGAGCAGAAAGAGTTGAAGTTACTCTTGGACATGTACAAAGGAGTCAGCAAGGAGCAGCGGGACAAGGTTCAACTGATGGCGGCCGAGCGGAAGGCTCGACAGGAACTCGAGGATCACCGGCAAAAAGCCAAGATGGCACAGGAGAGTAAACGAGAGCGTCGCATGGCGGACGAGGATGCGCTGCGTAAGATCAAGCAGCTTGAGGAGCAGAAATACGAACTGCAGAAGCAGTTATCCTGTGCGAGGCCCAATGCTGACGCCCTGCATGGCTTCTCCAGGCCCTTCGCTGGATCACCTGAAGAAGAAGCATTACTGAACGAAATGGAAGTGACGGGTCAGGCCTTCGAAGACATGCAGGAACAGAACTCGCGTCTCATCCAGCAGCTGCGGGAGAAAGACGACGCGAATTTCAAGCTCATGTCGGAGAGGATAAAGGCGAATTCATTACATAAATTGCTGAGAGAAGAGAAACAACTACTACAAGAACAGGTCATAACTCGCGACCAGCAGATAGAGTCAATGGGCGCGGTGGCGCGGCGACTCGAGGAGAAGGAGCGGCTACTGCAGGCCACGCTCTCCGCCGTCGAGAAGGAACTGTTGCTCCGGCAGCAAGCCATGGAGATGCACAAGCGGAAGGCCATCGAGTCTGCGCAGTCTGCGGCCGACCTCAAACTACATCTCGAGAAGTACCACGCTCAAATGAAGGAAGCGCAGCAGGTCGTGGCCGAGAAGACGAGCGCTCTTGAAGCCGAAGCGTACAAGACCAAAAGACTACACGAGGAACTTGCAATATTACGGCGAAAAGCGGAGAGGATGAAGAAAATGGAACAAGCCGGCAGCAGCATGGACGAGGTCTTACTCGAGGAGATCCGCGAGTACAAGGAGACGCTCACCTGCCCCTCCTGCAAGGTGAAACGCAAAGACGCGGTGCTAACGAAGTGTTTCCACGTGTTCTGCTGGGACTGCCTCCGCACTCGCTACGAGACCCGCCAGCGCAAGTGCCCCAAGTGCAACGCGGCCTTCGGAGCCAACGACTACCATCGCCTCTACCTCTCCACCTAG
Protein
MSNAVYFVGVDVGSSSVRAALVDNRGHVHKTSVREILTWKPKYNFYEQSSENIWNRSLEVIKDVVSGTDAANIKGIGFDATCSLVALDKNFNAIAVSDSNNNDQNVIMWMDHRAYNEANAINKTNHTVLKYVGGKVSLEMQMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGSMSRSLCSLVCKWNYECSARNKQGWNLDFLHEIGLNDLADDNYFKIGNKVLMPGEYCGGLTNDVACIVGLKTGTPVATSIIDAHAGGLGMIGARAQGIDSDKSSRLCLICGSSTCHMAVNKDAVLVEGVWGPYYSAMVPNMWLNEAGQSASGILLDHIIESHPAGSALLKTKSSGEIRRHLRDILLEMAKKEGLSSIDFLTKEVHVWPDFHGNRSPLADPTMRGMMTGLTINSNEENLAVLYLATLQALSYGTRHIIDALIQAGYKPFKSLLVCGGIIKDPLFVSTQADAASLPILQPHEKDSVLVGSAILGACASQYFPNIQDAIHNMGGTADVIQPDSNTKLYHDKKYRIFLKMYQDQLEYRSIMNSQKTIFKIVIIDKQVKMSKRGADEGGNGSSQPPIKKVHFEPHLIGPVSTLEEMDIKVLQFQNKKLAQRIEQRHRCEAELRARIEQLEKRQTQDDAVLCVVNRYWNLLNEDIRVLLQRFDAETADESENKNENEATTSFLMQLSTWDKEELDAQLANRVQVSKRAVAKVLQAFDRLQQRNDKIWRAIKGDGDEGGAAPSLDATVRAANEEVTAENRRLQGLCTALHEAHHAMTLRVAALHDSLNSRDTENAELKNQIDDLQYELMKVRSRNDKLENHLAEAIEKLKSYHQSGVTTAASAPAHSGAAAAKLEDVAAELEEQRELANNRLAELDRLHRQHRDTLKEVEKLKMDIRQLPESVIVETTEYKCLQSQFSVLYNESMQMKTALDETRLQLQNAKNLHMRQIEMMESEELSRQKALRAEMIQLEDVLGQLRKEYEMLRIEFEQNLAANEQTGPINREMRHLITSLQNHNQQLKGEVHRYKRKYKDTSQELNKARKEVEEANTRGGERGDEKPLTVKKEEPDPEGDDVTCGNSAGETKLPLSKDHGRAKMQEQEQIIKDLKQQLKKAVNEQKELKLLLDMYKGVSKEQRDKVQLMAAERKARQELEDHRQKAKMAQESKRERRMADEDALRKIKQLEEQKYELQKQLSCARPNADALHGFSRPFAGSPEEEALLNEMEVTGQAFEDMQEQNSRLIQQLREKDDANFKLMSERIKANSLHKLLREEKQLLQEQVITRDQQIESMGAVARRLEEKERLLQATLSAVEKELLLRQQAMEMHKRKAIESAQSAADLKLHLEKYHAQMKEAQQVVAEKTSALEAEAYKTKRLHEELAILRRKAERMKKMEQAGSSMDEVLLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLST

Summary

Uniprot
A0A2H1WUB1  
EMBL
ODYU01011114    SOQ56651.1   
Pfam
PF02782   FGGY_C        + More
PF00370   FGGY_N
Interpro
IPR017907   Znf_RING_CS        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR006003   FGGY_RbtK-like       
IPR013956   E3_ubiquit_lig_Bre1       
IPR018485   Carb_kinase_FGGY_C       
IPR001841   Znf_RING       
IPR018484   Carb_kinase_FGGY_N       
Gene 3D
3.30.40.10    
CDD
cd07782  FGGY_YpCarbK_like
ProteinModelPortal
A0A2H1WUB1  
PDB
3L0Q     E-value=2.21705e-145,     Score=1327

Ontologies

KEGG
101745732    K10696 E3 ubiquitin-protein ligase BRE1 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase Bre1
GO
GO:0016773   GO:0005975   GO:0010390   GO:0004842   GO:0005515   GO:0008270   GO:0005524   GO:0031683   GO:0001664   GO:0005525   GO:0007264   GO:0003824  
PANTHER
PTHR23163  

Topology

Length:
1466
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0179299999999999
Exp number, first 60 AAs:
0.01543
Total prob of N-in:
0.00095
outside
1  -  1466
 
 

Population Genetic Test Statistics

Pi
243.768661
Theta
201.127468
Tajima's D
-2.321555
CLR
101.708428
CSRT
0.00299985000749963
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 TGSFIITSGVIDPK 95.65 4e-09
26280517 EVGASQSGSIR 100.00 8e-04
26280517 YNFFTGCPGAK 100.00 0.001
25044914 YNFFTGCPGAK 100.00 0.001
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号