Silkworm Genome Informatics Database

Gene

KWMTBOMO05504

Pre Gene Modal

BGIBMGA006719

Annotation

PREDICTED:_T-box_transcription_factor_TBX6-like_[Papilio_xuthus]

Location

Bomo_Chr10(+):3743983-3801283 View in EpiBrowser

Transcription factor

T-box

Location in the cell

Nuclear Reliability : 3.746

CDS

ATGATGATGGACCAGGCGCATTTCGGCGAGTATCTGCTGCGGCAGCAAATGTTACATGCCGCTTCTCTGAGTGGATTACAACACCGCATAGGGGCGGATGCGGAGCCGCCAGCGTGCGAAGCGCGACTTCTCAACGGCGACCTCTGGAGGAGATTTCATGACATCGGTACGGAAATGATCATCACCAAGGGCGGAAGACGTATGTTTCCATCGCTTCGCATCTCGCTAGCTGGTCTCGACCCTCGAGAGGAGTACTGCGTCCTATTGGAGTTATCTCTTGTCGGACGCCGGCGTTGGCGGTGGGCGGGCGGCGCGTGGGCCGCAGCGGGCGGTGCCGAACCCCAGTCCCCGCGAAGACTTATGCTACACCCAGATTCACCTGCCCCCGGACATCACTGGACGGCCAACCCCGTCTCCTTCAGCAAATTGAAGCTAACAAACAACACCATGGACGCCCAGGGACACATGGTACTTACTTCAATGCATAAGTATTGTCCTCGGGTCCTGGTTGTGCGCGCACGAGATGCAGCAGCGCTGGCGTGGGGTGCTCCTCATGCAGCCTTCTCCTTCCCTGAGACTGAGTTCATCGCCGTCACTGCTTATCAGAATGACCGAATAACGAAACTGAAGATAGATAACAATCCATTTGCAAAAGGATTCAGAGCCTGTGGTCAATCCAAGTGCAAAAGAAAGAGCATTGAGAGTGCTAATGAAAACAGTTCAGAGCCACCTGGCGGTGAGGCGAGTGAACCTAAGCGACCTTGTTCCGATGCTGCTTCTTCGTGTTCAGAAGAAGGCAGTCTACGGTCGTCTTCGCCACGATCACCTCCCCTAGTGGAATCGCCTACACCTCTCATTGCTCCGCCAGAAAACATAAGTCCTCCACCTGCGGCGTTCTACCACCCAGAGTTGCCATACTTAGGGTCCATGCATTTACCTATGCCGTTAGGCTTGTGGCCTGGTAGTGCTATGAGCAATGGCCTCACTTGGGGTCCTATAGCACCTCCTCCTCCACCACACGTACCTTCACCAAAAGTGGCAGACCCAGCGCCTTGTCGTCGCCTGAAAAGTTTCACAATAAGCGCACTACTAGGAGAGGGTTGA

Protein

MMMDQAHFGEYLLRQQMLHAASLSGLQHRIGADAEPPACEARLLNGDLWRRFHDIGTEMIITKGGRRMFPSLRISLAGLDPREEYCVLLELSLVGRRRWRWAGGAWAAAGGAEPQSPRRLMLHPDSPAPGHHWTANPVSFSKLKLTNNTMDAQGHMVLTSMHKYCPRVLVVRARDAAALAWGAPHAAFSFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRACGQSKCKRKSIESANENSSEPPGGEASEPKRPCSDAASSCSEEGSLRSSSPRSPPLVESPTPLIAPPENISPPPAAFYHPELPYLGSMHLPMPLGLWPGSAMSNGLTWGPIAPPPPPHVPSPKVADPAPCRRLKSFTISALLGEG

Uniprot

A0A194QNK0 A0A194RMI4 S4PNC4 A0A2H1WNE1 A0A2A4IXH9 A0A0A1XR06 + More
A0A0K8VJ65 A0A034VQA1

Pubmed

26354079 23622113 25830018 25348373

EMBL

KQ458793 KPJ05061.1 KQ459984 KPJ19038.1 GAIX01000937 JAA91623.1 + More
ODYU01009490 SOQ53964.1 NWSH01004992 PCG64515.1 GBXI01000905 JAD13387.1 GDHF01013416 JAI38898.1 GAKP01014308 JAC44644.1

Proteomes

UP000053268 UP000053240 UP000218220

Pfam

PF00907 T-box

Interpro

IPR018186   TF_T-box_CS        + More
IPR036960   T-box_sf
IPR008967   p53-like_TF_DNA-bd
IPR001699   TF_T-box
IPR002070   TF_Brachyury

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.820

CDD

cd00182 TBOX

ProteinModelPortal

A0A194QNK0 A0A194RMI4 S4PNC4 A0A2H1WNE1 A0A2A4IXH9 A0A0A1XR06 + More
A0A0K8VJ65 A0A034VQA1

PDB

5FLV E-value=6.39373e-42, Score=429

KEGG

101737694 K10180 T-box protein 6 | (RefSeq) T-box transcription factor TBX6-like

GO

GO:0003700 GO:0005634 GO:0003677 GO:0006355 GO:0006468 GO:0005524 GO:0031683 GO:0001664 GO:0005525 GO:0007264 GO:0003824

PANTHER

PTHR11267

Subcellular location

Nucleus

Length:

367

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01045

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00705

outside

1 - 367

Pi

229.059369

Theta

180.415359

Tajima's D

0.913692

CLR

0.226551

CSRT

0.636618169091545

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics