SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05502
Pre Gene Modal
BGIBMGA010315
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106708942_[Papilio_machaon]
Location
Bomo_Chr10(+):3647717-3653418      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.732
 

Sequence

CDS
ATGGCTAACTATGAGAGAGATTTGTCATACGACCCGGCTGACGCCCGGCGCTCGCAGGTACCCGGGCCTGCGAGTGATAAATTGGTTACCGATGGACGCGCAGGAGTAGGCGACCAGGCCCCTGTTGCTGATAATATTACTGGAAGCAGTTATTTTGAAAATATTGACGGAGGACCGCGTGGGTCGTCTTCCGTTAGAAAACGCTCACGCGACAATGCTCCAGTGGGAGATGGGTCGGTAGATCTGTCCTCAGATGAGGAAGGCTTGCTGCCCCCCAAGAAATTACCGACCACGAGGAGAGGTCGGCAGGCTTCGAGAGGAGTGAGTGCTTCACGGCCGCGGAGGAACGCACAGGGTAGGTTCGTGTGCTCCAATACTCCGGCTGCCAGCAAAGCAGATAGTGACATGGGGGTCACTACCGAGGACCCTGGTGGCGAGAGCTGTGCCTCGCTAGGGAGCTCAAAGGCGGAGATCAACGCCGCCCGAAGAGAGCAGCGCAAAGCTGTCGCGGCCGACGAAGTGTCGGAAATGGCCCGACGCGCACGCGAGCGACGCGCTACTCTAGCGGCGGAAGGGGGGGAACCATCTGCGGTGGCCCTAAGTCAGCTTGCCTTGGACGGGGTGGACTTAGTCCTGAAGGTTGCCACCAAATCCGGCAGCCTGAAGGGCACGTTTACCCGCGGTCTGAAAGAAGCTGCCGCGGACATTAAGGAGGCGATTGGCATCCTCCTCAACAGGACGGCCTCTGACGAGGTTGCGAAGTTGCAGGAGGAAAACAGCCGTCTCCGAAATGATATGGAGGACCTCCGGCGACGAGTCACTGCGTTGAGCGAGCAGCAGCAGCGGCGTACGTCCACTGATGCCGCATCGGTAGTGGCCCCGGCTCCCGCACCGAGACCGACAAGCACTCATACCGACGACGAGGTCGAGCGCATTGTCCGGCTCTGTATGCTCCAGTGCGGGAGCATGGTCAATGCTCGTATGGAGGCAATTTCTCGGCGCCTCCCTGCGGAAATCCTCCGTCCGCCACTAGCGGCCGATACACGGCGGAGGGCTGAGGAGCCGCCGAGACCTAAGCCTAGGGAGGGGAAGCCCGCGGAGGGTGTTAAAAAGCCCGTCGAGGGAGCCCCATCGAGCGATCAGCCCACGACTGCTGGGTCTAAGGGTGAGACCTGGGTTACAGTCGTGGGCCGCAAGAAGGCACGCAGGGTCGCCAAGGCGGCCTCAGCAGCAACGCATGCCCCCGGCCAAACCGCAAAGGCGGTTGCGCAGCCTGCGCGGCGGGCTGCCAAAGGCGGTCGCAAAGGACCGGCGATACGTGCTCCGCGTTCCGAAGCTGTGACGCTCACGCTACAGCCCGGAGCTGCGGAGCGCGGCGTAACGTACCAGTCGGTCATCGCCGAAGCAAAGGCCAAGATCAAATTATCAGATCTTGGTCTTCAGGCCGTCACCCACAGGCAGGCTGCCACGGGTGCACGGTTGTTCGAGGTGGCTGGTACTATGAGTGGCAGTGCCGAAAAGGCGGACGCTCTGGCCGCCAAGATGAGGGAGGTCCTCAGCCCCGAGGACGTCCGGGTCTCCAGGCCAATGAAAACTGCAGAGGTGCGGATTGCTGGCCTGGATGACTCCGTGACCTCTGAGGAGGTGGTAGCGGCCGTTGCCCGAAGTGGAGAGTGTCCATCGGACAAGGTGCGGGCCGGCGATATACGCACCGACGCCACCGGACTCGGCGTGGTCTGGGTTCGGTGCCCTGTAGCGTCGGCGAAAAAGATCGCCTTAAGCGGCAGATTGCTGGTTGGCTGGGTTGCAGCGAGGGTGAAACTTCTGCAGCCCCGGGCTTTGCGGTGTTTCCGGTGCCTGGATAAGGGGCACGTCCGGGCAAAGTGCACCGCTGAAGTTGACCGCAGTGACCTTTGTTATCGCTGCGGTCAGCCCGGCCACAAGGCGGCTCAGTGTTCCGCGGCGCTCAACTGCAGCTTGTGTTCAGCTGCAGGGAAGCCAGCGGGACACAGGCTGGGTGGAGGAGCCTGTGGCGCACCAGCCAGCGAGGCCAAGAAGAAGAAGAGGAACTCAAAACCTGCCGGGGAAACCTCGCTACCCCCGCAGGCTAGTAGCTCCGGCAATATCAATCACTGTGCCAGAGCTCAGGATATTTTACTCCAGAGCATGGCAGAGTGGTCGATCCACGTGGCTGTGGTCGCCGAACCGTATTTTGTCCCCGCCCGTGACAACTGGCTGGGGAGCATTGACGGCTTGGTGGCCATTATCGGCCAGACCCTGATCAACCCGTCTCGGGGCCGCGGCTGGGTTGCTGCGGTCTCGGACGGTATCGGCATTGTAGGGGCGTATTTTTCTCCCAACAAGAGTCTCGCCGACTTTGAGGGGTTCCTCGTCGAGTTGGGCGCCGTCGTAGGCCGCTATCACCCTCGTCCCGTTCTGGTGCTCGGGGATCTCAACGCCAAGTCATCGGCGTGGGGATCTCCGGTCACTGACCATCGGGGCGAGGTGCTAGAAGAGTGGGCGGTGACAACTGGTCTGGTCGTCCTGAATCGGGGTTCGGAATACACGTGCGTGCGGCAGCGGGGCGGCTCGATAGTGGACGTCTCGTTTGCTAGCCCCTCTGTCGCCAGCCGAGTCCGCGACTGGCGTGTCGCCGTGGAGGTAGAGACGCTGTCGGACCATCGGTATATCCGGTTCGACGTCTCTGCCCAGACCGCGAGCGGCCGCCAGCCAACAGCCCCGATTAACGACGGCCCACGCTGGGCACTTAAGCGCATCGACAAGGAGCTACTCGAGGAAGCTGCCTTAGTCCAGTCCTGGATTTGGGAGTCGACAATGAACGGTCCCGTCGACGTCGAAGCGGTGGCGCTGTGGTTTCGAGGGGCGATGACGCAGATCTGCGACGCGTCCATGCCCCGGGTCCACCAACAGTCCGCAAGGCGCCAGGTGTACTGGTGGACCGACGAGATCGCGCGGCTGCGCGTTGAGTGCGTCGCGGCTCGCCGCCGGTACACGCGATACCGGAGACGACGTCGACGGGATTCCGTCGAGGAAGACGCGCTGTATGAGGCGTACCGCGCGTCTAAGGAGACTCTGTGGCTGGCCATCGGCGACTCTAAGTCGCGTGCCAGGGAGGAGCTGCTGGGCATGCAACCCCAGTTGCTAGAAGCGGTTGTATCGGCCCTCTTCCCTGAGCGAGCGGAATACGTTTCCCCGGCGATGGCTTCACCCTCAGCCACAGACTCTCGAGAAGAGGAAAGCACCGATGTCCCCGAGGTGACGCAAGCAGAGATGAGAGCGGCCGTGTTGCGACTCCGGTCTAAGAACACGGCCCCGGGACCCGACGGAGTTCCTGGTCGAGCACTCGTCCTGGCTCTGAAGGAGCTAGAGCCCCAGCTGAGGGGGCTCTTCACGGCATGTCTCGAGCAGGGTCAGTTTCCTAGTGTATGGAAGGAGGGGAAGCTGGTCCTGCTCAGGAAGGAGGGGCGCCCCGCGGACTCGCCGTCCGCGTATCGGCCCATAGTGCTGCTCGATGAGGCGGGCAAACTTTTTGAGCGCATTATCGCAGATCGCCTCGTCAGCCACTTGTGCAGGGAGGGGCCGGACCTGGATGACAACCAATTTGGTTTTCGTCGGGGGCGCTCCACCATAGACGCCATCATGCGTGTGAGGGCCCTGGCGGAGGAGACGGTGTCCCGGGGTGGGGTGGTACTGGCGGTGTCTTTAGACATCTCCAACGCTTTCAACACCCTACCCTGGAGTTGTATTCGGGAGGCTCTGAAATACCATCGCGTGCCTCCCTACCTCCGCCGCACGGTAGGGGCTTATCTGGAGGGTAGATGCGTCACTTATCGGGGACGTGACGGTGCCGGTCGGCACCTCATGTCGTGCGGTGTTCCACAGGGATCGGTCTTGGGACCGCTCCTGTGGAACATCGGCTACGACTGGGTGCTGAGAGGCGAGCTCCCGTCGGGCGCCAACTTGACGTGTTATGCGGACGACACGCTTGTCACTGCCCGGGGGAGCTCGCACAGGGAAGCGACGTTGATAGCCGCGGCTGCGGTGTCACTGGTGGTGAACCGCATCCGGCGCCTGGGCCTGGAGGTGGCCCTAAACAAGTCGGAGGCTATGGTGTTTCATGGCCCCCGACGTGCGCCGGCGCCGGGATCACACATCGTGGTAAGTGGGACCCGGATAGCTGTCGAGTCCACCATGAAGTATCTGGGATTGGTGCTCGACAGCCGATGGGAATTCGGGCCCCACTTCCGGCGGCTGGTGCCCAAGCTGATGGGTGCAGCGGGCGCGCTTTCAACGTTGCTTCCCAATTTGGGGGGCCCGAGCGCCGCCTGTAGGCGGTTGTACGTGGGAATCGTGCGGTCCATGGCCCTGTATGGGGCCCCTGTGTGGGCGATGGACATGACGGCCAGCACACTCGCCATTCTGCGTAAGCCGCAGAGGGTGATGGCCGTCAGAGTCATCCGCGGGTACCGCACGATTTCCTACGAGGCGGCTTGCGTCCTGGCCGGATCCCCGCCCTGGGACCTAGAGGCGAAAGTACTCGCGTCATTATATCGATGGCGCGAGGAAGAGCGGGCACGGGGCTCGAGGCTGGTGCAGCGGCAGATCGCGCTGCGCCGAGAGGAGCTCCGTCTGGCCTTGGTGGCGGAATGGCGGCAAAGGCTTCTGCGCCCTACCGCCGGCCTCGCAACCGTCGAGGCGATCCGGCCAGTACTCGACGACTGGCTCGGGAGAAGGCACGGATCCCTGTCGTTTAGGGTGACACAGGTGCTGTCGGGGCACGGTTGCTTCGGCAAGTACCTGTGCCGCATAGACAGGGAGCCGGACGCTCGGTGCCACCACTGCGTCCACTGCGGGGAGGACACGGCGCAACACACGCTCGCCGAGTGTGTAGCTTGGGAGGAGCAGCGCCGTGTCCTCACAAATGAAGTAGGAAGCGATCTGTCGCTGCCGGCCGTAGTGCGGAGGATGGTCGGCAGCGCAGAGTCGTGGGACGCGGTGGTGTCCTTCTGCGAGGACGTGATGTCGCAGAAGGAAACTGCAGAACGGGAGAGGGAGATCTCGACTCCCTTTCCCGGCCGCAGAAGGCGCACCGGGCGCAGGACAAGGGCGGACAATGCCCTTTTCCGCCCCCCATGA
Protein
MANYERDLSYDPADARRSQVPGPASDKLVTDGRAGVGDQAPVADNITGSSYFENIDGGPRGSSSVRKRSRDNAPVGDGSVDLSSDEEGLLPPKKLPTTRRGRQASRGVSASRPRRNAQGRFVCSNTPAASKADSDMGVTTEDPGGESCASLGSSKAEINAARREQRKAVAADEVSEMARRARERRATLAAEGGEPSAVALSQLALDGVDLVLKVATKSGSLKGTFTRGLKEAAADIKEAIGILLNRTASDEVAKLQEENSRLRNDMEDLRRRVTALSEQQQRRTSTDAASVVAPAPAPRPTSTHTDDEVERIVRLCMLQCGSMVNARMEAISRRLPAEILRPPLAADTRRRAEEPPRPKPREGKPAEGVKKPVEGAPSSDQPTTAGSKGETWVTVVGRKKARRVAKAASAATHAPGQTAKAVAQPARRAAKGGRKGPAIRAPRSEAVTLTLQPGAAERGVTYQSVIAEAKAKIKLSDLGLQAVTHRQAATGARLFEVAGTMSGSAEKADALAAKMREVLSPEDVRVSRPMKTAEVRIAGLDDSVTSEEVVAAVARSGECPSDKVRAGDIRTDATGLGVVWVRCPVASAKKIALSGRLLVGWVAARVKLLQPRALRCFRCLDKGHVRAKCTAEVDRSDLCYRCGQPGHKAAQCSAALNCSLCSAAGKPAGHRLGGGACGAPASEAKKKKRNSKPAGETSLPPQASSSGNINHCARAQDILLQSMAEWSIHVAVVAEPYFVPARDNWLGSIDGLVAIIGQTLINPSRGRGWVAAVSDGIGIVGAYFSPNKSLADFEGFLVELGAVVGRYHPRPVLVLGDLNAKSSAWGSPVTDHRGEVLEEWAVTTGLVVLNRGSEYTCVRQRGGSIVDVSFASPSVASRVRDWRVAVEVETLSDHRYIRFDVSAQTASGRQPTAPINDGPRWALKRIDKELLEEAALVQSWIWESTMNGPVDVEAVALWFRGAMTQICDASMPRVHQQSARRQVYWWTDEIARLRVECVAARRRYTRYRRRRRRDSVEEDALYEAYRASKETLWLAIGDSKSRAREELLGMQPQLLEAVVSALFPERAEYVSPAMASPSATDSREEESTDVPEVTQAEMRAAVLRLRSKNTAPGPDGVPGRALVLALKELEPQLRGLFTACLEQGQFPSVWKEGKLVLLRKEGRPADSPSAYRPIVLLDEAGKLFERIIADRLVSHLCREGPDLDDNQFGFRRGRSTIDAIMRVRALAEETVSRGGVVLAVSLDISNAFNTLPWSCIREALKYHRVPPYLRRTVGAYLEGRCVTYRGRDGAGRHLMSCGVPQGSVLGPLLWNIGYDWVLRGELPSGANLTCYADDTLVTARGSSHREATLIAAAAVSLVVNRIRRLGLEVALNKSEAMVFHGPRRAPAPGSHIVVSGTRIAVESTMKYLGLVLDSRWEFGPHFRRLVPKLMGAAGALSTLLPNLGGPSAACRRLYVGIVRSMALYGAPVWAMDMTASTLAILRKPQRVMAVRVIRGYRTISYEAACVLAGSPPWDLEAKVLASLYRWREEERARGSRLVQRQIALRREELRLALVAEWRQRLLRPTAGLATVEAIRPVLDDWLGRRHGSLSFRVTQVLSGHGCFGKYLCRIDREPDARCHHCVHCGEDTAQHTLAECVAWEEQRRVLTNEVGSDLSLPAVVRRMVGSAESWDAVVSFCEDVMSQKETAEREREISTPFPGRRRRTGRRTRADNALFRPP

Summary

Uniprot
A0A0J7KQK3   A0A3S2LNH8   A0A0J7N0R3   A0A0J7KFH2   A0A0J7KRB8   A0A0J7NFZ0   + More
J9JWJ3   X1WJY4   A0A0J7KIS5   J9KJG8   X1WZ64   J9KM84   J9KT61   J9LA43   A0A139WAH4   A0A139W940   A0A139WN93   A0A139WNC9   A0A139W939   A0A139W9B3   J9KWM9  
Pubmed
18362917    19820115   
EMBL
LBMM01004272    KMQ92618.1    RSAL01003504    RVE40273.1    LBMM01012412    KMQ86235.1    + More
LBMM01008278    KMQ89009.1    LBMM01003988    KMQ92922.1    LBMM01005474    KMQ91485.1    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02011238    LBMM01006977    KMQ90149.1    ABLF02041886    ABLF02011183    ABLF02041884    ABLF02018942    ABLF02041885    ABLF02009073    ABLF02030702    ABLF02042963    ABLF02018098    KQ971388    KYB24913.1    KQ972691    KXZ75806.1    KQ971310    KYB29499.1    KYB29500.1    KXZ75807.1    KQ972544    KXZ75869.1    ABLF02011927   
Proteomes
UP000036403    UP000283053    UP000007819    UP000007266   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR000663   Natr_peptide       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
3.60.10.10     3.40.390.10    
ProteinModelPortal
A0A0J7KQK3   A0A3S2LNH8   A0A0J7N0R3   A0A0J7KFH2   A0A0J7KRB8   A0A0J7NFZ0   + More
J9JWJ3   X1WJY4   A0A0J7KIS5   J9KJG8   X1WZ64   J9KM84   J9KT61   J9LA43   A0A139WAH4   A0A139W940   A0A139WN93   A0A139WNC9   A0A139W939   A0A139W9B3   J9KWM9  
PDB
1WDU     E-value=4.95181e-09,     Score=152

Ontologies

KEGG
105842725    no KO assigned | (RefSeq) uncharacterized LOC105842725
GO
GO:0008270   GO:0003676   GO:0003964   GO:0016021   GO:0005179   GO:0005576   GO:0004672   GO:0006468   GO:0005524   GO:0031683   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

Topology

Length:
1718
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.533149999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00004
outside
1  -  1718
 
 

Population Genetic Test Statistics

Pi
227.358471
Theta
158.298323
Tajima's D
1.897252
CLR
0.622645
CSRT
0.866356682165892
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号