Gene

KWMTBOMO05496

Pre Gene Modal

BGIBMGA006716

Annotation

integrin_alpha-PS4-like_[Bombyx_mori]

Location

Bomo_Chr10(+):3488617-3502837      View in EpiBrowser

Full name

Integrin alpha-PS4      

Alternative Name

Position-specific antigen subunit alpha-4

Location in the cell

Cytoplasmic   Reliability : 1.622

CDS

ATGCTAAATTTAATAGTTACCGCTCCGATAGCAGATAATATAGGGCAAGTTTACGTTTGCCAAATCGACAACTTACACTGCAAGCCAATTGAAAGGAATATCGTAAGAGACAATAGTAAATACGATCATAACTACTGGCTCGGAGCGACTGTGGAAGCTGGGTCATCATTTTTCGTGACCTGCGCTCCACTGCTGGTCAAACATAGCGAAAATGGTGTTGGAACGACGGGAGGGTGCTTCATTTCGAAAGATAATCTTTCAATTGAACAATTTGTCCTCGATCAGAATGGCTCCCCAAAAAATACAACATTCGAATCTCGATTATCTTCCTTCGGTTGGAGTCTGACTATCAGCGACCAGGAATCTATTGTTGTTGGAGGACCTGCTATGTATACTGGTCGCACTTTACTGTACATGAAGCCGGAAGCTTCTAATTCACCGTATGTTGCGGCAGGCATCGACAACGATGTGGACTTCAATTTTGGGTATAGTGTGACGTCAGGATATTTCGCAACATCTAAATTGCTAATGTACGCAGTGGGTAGCCCATACGGTTTCGGAAAGGTTTTATTTTTCGGACAACAGTGGAGGTTGTTTAAGCAACTTAAGTTCAAACAACCGAAGACGAATGTCGGGGAGATGTTTGGCGCTAGTTTGTGCTCGGCTCGTATCTTCGGACAACGATCAGACTTGTTAGTCGGAGCTCCGGGACGAGCGAGCGACAAGGAATACAACGTAGGCGCTGTCTACGTTTTTGTTGCAAACAAGCTAATGGCTCTAAACTATAAAAGGATTATTACGGGCCGAAAGGAAGGTTCGATGTTTGGCAGCGCTATTATCAATGTTGGAGATTTAAACGGAGACAAGAAAGATGATATAGCAATAGCAGCGCCATTTGAAAATGATGGTAGAGGGGTAGTCTACATCTACTGTGGCGCTGAAATTCTGGGTCTCAAAGAACCCAAAAAGCCTTTTAACTTCTTGCAAATGATAGAATCCGAAGATTATTACTATGGCTTCGGCTTGGGACTAGGCATTTTGAACGACTATGACCAAAACGGATGCAATGAATTAGCCATCGGAAGTCCGTTGAATAACACTGTGTTTATACTGCCATGTTTTGCCTATATCACCGTCGAATTGTATACCGAGTATCCAGATCTACAGAATCGAGAAATTATAAACGCAGTGGCACAAAATGATGTGAACGAAACACACTTTCGTTTTGACACCTGCCTGCGTGTAACGTTTCCGAAAAAGCCTACCAAAGCATATGCCGAACTAGAAGTGGAAATCGAAATATCGGGCGACACTAAAGCATCCCTAAGTGACCCAAATTCAGATAAAAAATACATAGTGAAAATCGAGAAAACGACTAAACAATCTGTTCAACAGTTCTGCAAGAAGATTGGTGTCTATCTGCCAACGGACGGACATTACGATTCACCAATAAAATTTAAGATTATTGCGAAGCAAATAAATGATCCACAACTACAATCAAATCCGGAACCATCCCACGTTGTCGTCAATGAAAACAGTATTTTAACTCTACGACATGATATCTGGGCAGCGCAATGTAAAAATAAAATGTCGTGTTTGCCTGACATTCATTTGGATATCACGAACCTATTTCCAGAGCCCTATCTGCTTGGCTCGTCGGAGACGGAGGACATACAGATGAAGGTAACAAACCACGGCGAGGTGGCTTACAGCGCCTGCCTTAAAGTGGACGTCGTCAACGCGGCCGTTGTGCGAGCCTCTGCTCTCAGCTGCACCATTGGTGACCAAGAGAATACTCTTACATGCATTTCACAGAAACCAATTCATAAAAACGATCCCTGGGACATTGGTCATATATCATTGAAAATGACAGACGCCACAAACAAAGACGAATTCATAACACTTAAAGTAAGAGTCTATAACAACTGCAAGACTCCTAAGATATTTACGCTGATTGAAAAACAATATAAACTGACGAGAGATCTTAATGATATAGAAATTATAGGAAGAACTAATCTAGGAAGCGTCATAAACACAACAGTAGAAGAAATAAAGTTTGAGAAGAAAATCTTAGAACATATTTACACAATTAGCAACAAAGTGGCGAACCCGTGGCTTGGAGGTCCAAAGTTCAAAATCACCTCCATGACACCCCATTTTCTGCACTATACCAAATCACCTGTCACAGTGAGTTATGAAAAATCTAAGTTAATAATCATAAATTATACTAATTTAAAAATGTAA

Protein

MLNLIVTAPIADNIGQVYVCQIDNLHCKPIERNIVRDNSKYDHNYWLGATVEAGSSFFVTCAPLLVKHSENGVGTTGGCFISKDNLSIEQFVLDQNGSPKNTTFESRLSSFGWSLTISDQESIVVGGPAMYTGRTLLYMKPEASNSPYVAAGIDNDVDFNFGYSVTSGYFATSKLLMYAVGSPYGFGKVLFFGQQWRLFKQLKFKQPKTNVGEMFGASLCSARIFGQRSDLLVGAPGRASDKEYNVGAVYVFVANKLMALNYKRIITGRKEGSMFGSAIINVGDLNGDKKDDIAIAAPFENDGRGVVYIYCGAEILGLKEPKKPFNFLQMIESEDYYYGFGLGLGILNDYDQNGCNELAIGSPLNNTVFILPCFAYITVELYTEYPDLQNREIINAVAQNDVNETHFRFDTCLRVTFPKKPTKAYAELEVEIEISGDTKASLSDPNSDKKYIVKIEKTTKQSVQQFCKKIGVYLPTDGHYDSPIKFKIIAKQINDPQLQSNPEPSHVVVNENSILTLRHDIWAAQCKNKMSCLPDIHLDITNLFPEPYLLGSSETEDIQMKVTNHGEVAYSACLKVDVVNAAVVRASALSCTIGDQENTLTCISQKPIHKNDPWDIGHISLKMTDATNKDEFITLKVRVYNNCKTPKIFTLIEKQYKLTRDLNDIEIIGRTNLGSVINTTVEEIKFEKKILEHIYTISNKVANPWLGGPKFKITSMTPHFLHYTKSPVTVSYEKSKLIIINYTNLKM

Description

Possible role in cell adhesion. Minor involvement in the establishment of the oocyte anterior-posterior length.

Subunit

Heterodimer of an alpha and a beta subunit.
Heterodimer of an alpha and a beta subunit. Alpha-PS4 associates with beta-PS (By similarity).

Similarity

Belongs to the integrin alpha chain family.

Keywords

Cell adhesion   Complete proteome   Glycoprotein   Integrin   Membrane   Receptor   Reference proteome   Repeat   Signal   Transmembrane   Transmembrane helix  

Feature

chain  Integrin alpha-PS4

Uniprot

A0A076JP55   H9JB21   A0A076JU39   Q1G0S7   A0A2H1VTL5   A0A2A4JEF9   + More
A0A2A4JQ16   A0A3S2P8H4   A0A212FK70   A0A194QJF9   A0A212EXX6   A0A194RNQ6   A0A194QPI3   A0A336MXS4   A0A3S2NWJ7   A0A212F4X5   A0A194PIS8   Q1G0S5   A0A076JQH6   A0A2A4JDI8   A0A3S2N8M6   A0A076JUD8   A0A194QI28   A0A1I8PYL5   A0A336LX28   A0A1I8N608   W8B5Q2   E2B0Y4   A0A151WSN2   F4X5Q1   A0A2A3ECL3   A0A026VUY3   A0A088ACX9   A0A3L8DE97   A0A195BWJ3   B4QGF2   A0A0J9RD24   A0A195CPU1   B2GUF9   A0A154P056   A0A0P6DN56   A0A0N8BFC6   A0A0P6JVW2   A0A0P5SD25   A0A0P5L4J9   A0A2A4JPM1   A0A0P5QPQ0   A0A195FQK3   A0A310STA2   A0A1I8P8N4   A0A0P6DFS1   A0A0P5RYS9   Q6DCU9   A0A1L8EL13   A0A1L8EL24   A0A1I8P8N1   A0A3B0JT85   Q9V7A4   A0A3B0J7L9   A0A1I8PI49   A0A1L8ES70   A0A1I8PHZ3   Q5XH72   A0A0P6DLJ0   A0A1W4WBI4   A0A0J9RD84   A0A0A1XJR9   B4QGF1   A0A182VVJ9   A0A0J9RDC1   A0A1W4WCU4   A0A1I8NPW8   B4P7V2   E9IJA6   A0A182WB95   B4KSA6   B4HS20   A0A0A1X2M1   A0A158NUX1   A0A1I8M3U7   Q86G86   A0A0P5VVN1   A0A1W4W0F9   A0A0P5VVK5   A0A162PIG7   A0A0P5WIB8   A0A0P5BJX4   E2BXW6   A0A1I8M3U3   A0A0N8AYM9   A0A182HAI7   A0A232EN93   A0A1L8EBN8   A0A1L8EBQ8   A0A1Y1LCJ3   A0A1L8EC31  

Pubmed

25064490    19121390    17553801    22118469    26354079    17868866    + More
25315136    24495485    20798317    21719571    24508170    30249741    17994087    22936249    20431018    27762356    10731132    12537572    19035354    20689801    21124962    22438831    25830018    17550304    21282665    21347285    12974949    26483478    28648823    28004739   

EMBL

KJ511851    AII79410.1    BABH01008474    KJ511852    AII79411.1    DQ531844    + More
ABF59518.1    ODYU01004083    SOQ43584.1    NWSH01001781    PCG70156.1    NWSH01000931    PCG73502.1    RSAL01000201    RVE44446.1    AGBW02008132    OWR54131.1    KQ458793    KPJ05055.1    AGBW02011645    OWR46348.1    KQ459984    KPJ19044.1    KQ461194    KPJ06885.1    UFQT01001465    SSX30678.1    RSAL01000043    RVE50694.1    AGBW02010302    OWR48769.1    KQ459603    KPI92953.1    DQ531846    ABF59520.1    KJ511850    AII79409.1    PCG70155.1    RVE44447.1    KJ511853    AII79412.1    KPJ05054.1    UFQT01000196    SSX21531.1    GAMC01021441    JAB85114.1    GL444716    EFN60653.1    KQ982769    KYQ50932.1    GL888739    EGI58217.1    KZ288285    PBC29468.1    KK108839    EZA46609.1    QOIP01000009    RLU18616.1    KQ976401    KYM92650.1    CM000362    EDX07190.1    CM002911    KMY93933.1    KQ977444    KYN02758.1    AAMC01116227    BC166262    AAI66262.1    KQ434787    KZC05299.1    GDIQ01084793    JAN09944.1    GDIQ01183251    JAK68474.1    GDIQ01006722    JAN88015.1    GDIQ01095273    JAL56453.1    GDIQ01176541    JAK75184.1    NWSH01000832    PCG73951.1    GDIQ01117966    JAL33760.1    KQ981335    KYN42577.1    KQ760551    OAD59829.1    GDIQ01078282    JAN16455.1    GDIQ01095274    JAL56452.1    BC077891    AAH77891.1    CM004483    OCT60024.1    OCT60025.1    OUUW01000001    SPP75911.1    AE013599    BT023104    BT128883    SPP75912.1    CM004482    OCT62194.1    BC084201    AAH84201.1    GDIQ01075841    JAN18896.1    KMY93932.1    GBXI01014337    GBXI01003157    JAC99954.1    JAD11135.1    EDX07189.1    KMY93931.1    CM000158    EDW91128.1    GL763764    EFZ19346.1    CH933808    EDW08388.1    CH480816    EDW47967.1    GBXI01009292    JAD05000.1    ADTU01026806    ADTU01026807    ADTU01026808    AY237587    AAO85805.1    GDIP01094590    JAM09125.1    GDIP01094589    JAM09126.1    LRGB01000512    KZS18876.1    GDIP01085627    JAM18088.1    GDIP01188768    GDIP01188767    JAJ34635.1    GL451328    EFN79466.1    GDIQ01230027    JAK21698.1    JXUM01005310    KQ560190    KXJ83915.1    NNAY01003194    OXU19825.1    GFDG01002632    JAV16167.1    GFDG01002631    JAV16168.1    GEZM01062083    JAV70050.1    GFDG01002630    JAV16169.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    + More
UP000095300    UP000095301    UP000000311    UP000075809    UP000007755    UP000242457    UP000053097    UP000005203    UP000279307    UP000078540    UP000000304    UP000078542    UP000008143    UP000076502    UP000078541    UP000186698    UP000268350    UP000000803    UP000192221    UP000075920    UP000002282    UP000009192    UP000001292    UP000005205    UP000076858    UP000008237    UP000069940    UP000249989    UP000215335   

PRIDE

H9JB21    Q9V7A4   

Pfam

PF01839   FG-GAP        + More
PF08441   Integrin_alpha2
PF00246   Peptidase_M14
PF00357   Integrin_alpha

Interpro

IPR028994   Integrin_alpha_N        + More
IPR000413   Integrin_alpha       
IPR013519   Int_alpha_beta-p       
IPR013517   FG-GAP       
IPR013649   Integrin_alpha-2       
IPR032695   Integrin_dom_sf       
IPR018184   Integrin_alpha_C_CS       
IPR034223   IGCP-like_CPD       
IPR000834   Peptidase_M14       

SUPFAM

SSF69179   SSF69179       

Gene 3D

2.130.10.130    

CDD

cd03860  M14_CP_A-B_like

ProteinModelPortal

A0A076JP55   H9JB21   A0A076JU39   Q1G0S7   A0A2H1VTL5   A0A2A4JEF9   + More
A0A2A4JQ16   A0A3S2P8H4   A0A212FK70   A0A194QJF9   A0A212EXX6   A0A194RNQ6   A0A194QPI3   A0A336MXS4   A0A3S2NWJ7   A0A212F4X5   A0A194PIS8   Q1G0S5   A0A076JQH6   A0A2A4JDI8   A0A3S2N8M6   A0A076JUD8   A0A194QI28   A0A1I8PYL5   A0A336LX28   A0A1I8N608   W8B5Q2   E2B0Y4   A0A151WSN2   F4X5Q1   A0A2A3ECL3   A0A026VUY3   A0A088ACX9   A0A3L8DE97   A0A195BWJ3   B4QGF2   A0A0J9RD24   A0A195CPU1   B2GUF9   A0A154P056   A0A0P6DN56   A0A0N8BFC6   A0A0P6JVW2   A0A0P5SD25   A0A0P5L4J9   A0A2A4JPM1   A0A0P5QPQ0   A0A195FQK3   A0A310STA2   A0A1I8P8N4   A0A0P6DFS1   A0A0P5RYS9   Q6DCU9   A0A1L8EL13   A0A1L8EL24   A0A1I8P8N1   A0A3B0JT85   Q9V7A4   A0A3B0J7L9   A0A1I8PI49   A0A1L8ES70   A0A1I8PHZ3   Q5XH72   A0A0P6DLJ0   A0A1W4WBI4   A0A0J9RD84   A0A0A1XJR9   B4QGF1   A0A182VVJ9   A0A0J9RDC1   A0A1W4WCU4   A0A1I8NPW8   B4P7V2   E9IJA6   A0A182WB95   B4KSA6   B4HS20   A0A0A1X2M1   A0A158NUX1   A0A1I8M3U7   Q86G86   A0A0P5VVN1   A0A1W4W0F9   A0A0P5VVK5   A0A162PIG7   A0A0P5WIB8   A0A0P5BJX4   E2BXW6   A0A1I8M3U3   A0A0N8AYM9   A0A182HAI7   A0A232EN93   A0A1L8EBN8   A0A1L8EBQ8   A0A1Y1LCJ3   A0A1L8EC31  

PDB

4CAK     E-value=1.31269e-19,     Score=240

KEGG

101737265    no KO assigned | (RefSeq) integrin alpha-PS4-like

GO

GO:0008305   GO:0007155   GO:0007229   GO:0016021   GO:0008270   GO:0004181   GO:0001555   GO:0046982   GO:0007160   GO:0033627   GO:0007157   GO:0043277   GO:0030336   GO:0035001   GO:0007391   GO:0007411   GO:0009925   GO:0042060   GO:0003344   GO:0007431   GO:0005737   GO:0016324   GO:0048149   GO:0007508   GO:0045886   GO:0007186   GO:0019001   GO:0031683   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

Subcellular location

Membrane  

Length:

747

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.784739999999996

Exp number, first 60 AAs:

0.1983

Total prob of N-in:

0.02449

outside

1  -  747

 

 

Pi

242.601619

Theta

177.796239

Tajima's D

0.80817

CLR

0.080371

CSRT

0.609319534023299

Interpretation

Uncertain