Gene

KWMTBOMO05494

Pre Gene Modal

BGIBMGA006624

Annotation

integrin_alpha-IIb-like_precursor_[Bombyx_mori]

Location

Bomo_Chr10(-):3473143-3478776      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.377

CDS

ATGTTATTAACATATTTTCCAGGATATGGCCTAGCGTCTGGAAACTTTTTCGACAACAGCACAGTTTTTGAAGCAGTCAGCATGAAGAACAATGATTTGAAAGGACAGGTAATGTTTATGCAGTACCCAAATTTAGGGAAGCAGAATAAACTAATAGTAAACGAAAAAACTGAGGAACATTTGGTGGAGGACACTTCAGTCGGTACTATGTTTGGATACGTGATGTCTACTGCTGACCTAAATGTCGATGGAATCGCGGACCTTCTGGTATCAGCGCCGGGGTACTTTCGCGGCAGACATGCGTATGACTTAGGCGCTGTTTATATATACATCGGAGGTCATTCGATATTAAAATCCAATAAAAATCACAACGCGAGAACTATTGTGGGCGTTAAGGAAGGCGCCCGTTTCGGCAGTTCATTGATCGCTCAAGATCTCGATGGCGATGGAATTCCTGAATTGATAATTGGAGCGCCTTACGAAGATCAAGGTTTAGGCGCTTTGTACATTTTATCAGGGTACGAGGTTAAAACGAAATTACTGACTGAAAAAGGTTCGAATATTGAAATGATGCTTTCGGCTTTCACTGAGACTCAAAGGATACAATTATCGGAATTCAAGCAATTCGGATTTAGTCTTCAGCCATTAGTTGATGTAGACGACAATGGATCTACAGAACTGGCAGTGGGATCACCGGGTAGTGCGGCTGTGGTGATATTTCGCTCTATTCCAGTAGAATCGGTCGAATTGACAATTATAGGACAAAATAGCTTTAAAGAGCAAGACACAAGCGTCGTTCTGGTTGTGTGTGCACAAATAGAAAAACGAAAACTTGCAACATCAAGAAGTGAGTATTTTATTATAGTTATTGCGTTGTCTACTTACTAG

Protein

MLLTYFPGYGLASGNFFDNSTVFEAVSMKNNDLKGQVMFMQYPNLGKQNKLIVNEKTEEHLVEDTSVGTMFGYVMSTADLNVDGIADLLVSAPGYFRGRHAYDLGAVYIYIGGHSILKSNKNHNARTIVGVKEGARFGSSLIAQDLDGDGIPELIIGAPYEDQGLGALYILSGYEVKTKLLTEKGSNIEMMLSAFTETQRIQLSEFKQFGFSLQPLVDVDDNGSTELAVGSPGSAAVVIFRSIPVESVELTIIGQNSFKEQDTSVVLVVCAQIEKRKLATSRSEYFIIVIALSTY

Subunit

Heterodimer of an alpha and a beta subunit.

Similarity

Belongs to the integrin alpha chain family.

Uniprot

A0A076JUD8   H9JAS9   A0A3S2N8M6   A0A194QI28   A0A194RNZ7   A0A2H1W5Q9   + More
A0A2A4JDI8   A0A0N0PA22   A0A212EXX6   E2C5B5   Q1G0S7   A0A2A4JEF9   A0A2H1VTL5   K7JKJ7   A0A026WI38   A0A3L8DJR7   A0A212F4X5   A0A212FK70   A0A151X3A5   A0A3R7SKY0   A0A195EFW4   E1ZWJ9   A0A195BQ49   A0A3S2NWJ7   A0A158NTN1   A0A2A3EQJ4   A0A2A4JPM1   Q86G86   A0A0M8ZZN4   A0A2A4JQ16   A0A182PIT2   A0A088A7Y8   F7BIM6   A0A1W5BKC1   A0A1W2W4I7   A0A151IES7   A0A2H1VUW8   A0A2Z5WPE6   A0A195ERR3   A0A0P4W2E3   A0A0P4WDW2   A0A182SV92   A0A182I6G5   Q1G0S5   A0A2H1V8F5   A0A0L7RBD3   A0A182X2A4   A0A182L3X5   A0A182UU20   H9JB22   H9JLQ2   A0A154PLR9   A0A182NA97   A0A076JQH6   A0A194RNQ6   B7PQK7   Q7QIG1   V5H492   V5HB24   A0A0C9RXW5   T2ME15   A0A076JU39   T1KNR3   A0A182Y859   A0A2P6KP11   A0A3Q0K2L1   A0A3Q0K412   A0A3Q0K1F8   A0A182K183   A0A194QPI3   A0A182U096   A0A0K8VIA7   A0A0K8VM67   A0A034VIP4   A0A3Q0JU74   A0A1W2W9R0   A0A087TLZ9   W8BH52   W8AK36   A0A182Q4F5   A0A154PDS6   A0A194PIS8   A0A183V741   A0A3P7IMX9   A0A0C9RBY3   A0A1Y1LCJ3   A0A1Y1L8R1   A0A0P4VS48   A0A182MG76   A0A084WMT0   A0A0T6BDD0   A0A195E483   E0VV34   A0A0C9RXW8   A0A1I8PYL5   A0A1X7VKZ8  

Pubmed

25064490    19121390    26354079    22118469    20798317    17553801    + More
20075255    24508170    30249741    21347285    12974949    12481130    15114417    17868866    20966253    12364791    25765539    24065732    25244985    25348373    24495485    28004739    24438588    20566863   

EMBL

KJ511853    AII79412.1    BABH01008472    BABH01008473    RSAL01000201    RVE44447.1    + More
KQ458793    KPJ05054.1    KQ459984    KPJ19045.1    ODYU01006488    SOQ48367.1    NWSH01001781    PCG70155.1    KQ458932    KPJ04552.1    AGBW02011645    OWR46348.1    GL452770    EFN76848.1    DQ531844    ABF59518.1    PCG70156.1    ODYU01004083    SOQ43584.1    AAZX01012009    KK107198    EZA55623.1    QOIP01000007    RLU20098.1    AGBW02010302    OWR48769.1    AGBW02008132    OWR54131.1    KQ982562    KYQ54882.1    QCYY01003118    ROT65225.1    KQ978983    KYN26784.1    GL434853    EFN74436.1    KQ976424    KYM88635.1    RSAL01000043    RVE50694.1    ADTU01025990    KZ288203    PBC33409.1    NWSH01000832    PCG73951.1    AY237587    AAO85805.1    KQ435793    KOX74187.1    NWSH01000931    PCG73502.1    KQ977870    KYM99218.1    ODYU01004594    SOQ44635.1    LC114983    BBC20717.1    KQ981993    KYN30945.1    GDRN01078258    GDRN01078256    JAI62609.1    GDRN01078264    GDRN01078261    JAI62606.1    APCN01003636    DQ531846    ABF59520.1    ODYU01001218    SOQ37130.1    KQ414617    KOC68174.1    BABH01008477    BABH01008478    BABH01008479    BABH01005253    BABH01005254    BABH01005255    BABH01005256    BABH01005257    KQ434977    KZC12806.1    KJ511850    AII79409.1    KPJ19044.1    ABJB010126205    ABJB010280552    ABJB010724140    ABJB010758833    ABJB011130998    DS766189    EEC08879.1    AAAB01008807    EAA04235.3    GANP01006638    JAB77830.1    GANP01012401    JAB72067.1    GBYB01014095    JAG83862.1    HAAD01003908    CDG70140.1    KJ511852    AII79411.1    CAEY01000277    MWRG01007780    PRD28069.1    KQ461194    KPJ06885.1    GDHF01026317    GDHF01014059    JAI25997.1    JAI38255.1    GDHF01012345    JAI39969.1    GAKP01017524    JAC41428.1    KK115834    KFM66138.1    GAMC01017582    GAMC01017581    JAB88974.1    GAMC01017580    JAB88975.1    AXCN02001190    KQ434885    KZC10049.1    KQ459603    KPI92953.1    UYWY01023704    VDM47882.1    GBYB01014094    JAG83861.1    GEZM01062083    JAV70050.1    GEZM01062082    JAV70052.1    GDRN01101759    JAI58324.1    AXCM01009169    ATLV01024506    KE525352    KFB51524.1    LJIG01001588    KRT85352.1    KQ979657    KYN19896.1    DS235802    EEB17240.1    GBYB01014100    JAG83867.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000218220    UP000007151    + More
UP000008237    UP000002358    UP000053097    UP000279307    UP000075809    UP000283509    UP000078492    UP000000311    UP000078540    UP000005205    UP000242457    UP000053105    UP000075885    UP000005203    UP000008144    UP000078542    UP000078541    UP000075901    UP000075840    UP000053825    UP000076407    UP000075882    UP000075903    UP000076502    UP000075884    UP000001555    UP000007062    UP000015104    UP000076408    UP000075881    UP000075902    UP000054359    UP000075886    UP000050794    UP000267007    UP000075883    UP000030765    UP000009046    UP000095300    UP000007879   

PRIDE

H9JAS9    H9JB22    H9JLQ2   

Pfam

PF01839   FG-GAP        + More
PF08441   Integrin_alpha2
PF00246   Peptidase_M14
PF01435   Peptidase_M48
PF00092   VWA
PF00357   Integrin_alpha
PF00629   MAM
PF00400   WD40

Interpro

IPR013517   FG-GAP        + More
IPR018184   Integrin_alpha_C_CS       
IPR028994   Integrin_alpha_N       
IPR000413   Integrin_alpha       
IPR013519   Int_alpha_beta-p       
IPR032695   Integrin_dom_sf       
IPR013649   Integrin_alpha-2       
IPR034223   IGCP-like_CPD       
IPR000834   Peptidase_M14       
IPR001915   Peptidase_M48       
IPR036465   vWFA_dom_sf       
IPR002035   VWF_A       
IPR013320   ConA-like_dom_sf       
IPR000998   MAM_dom       
IPR017868   Filamin/ABP280_repeat-like       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       

SUPFAM

SSF69179   SSF69179        + More
SSF53300   SSF53300       
SSF49899   SSF49899       
SSF50978   SSF50978       

Gene 3D

2.130.10.130     3.40.50.410     2.130.10.10    

CDD

cd03860  M14_CP_A-B_like
cd06263  MAM

ProteinModelPortal

A0A076JUD8   H9JAS9   A0A3S2N8M6   A0A194QI28   A0A194RNZ7   A0A2H1W5Q9   + More
A0A2A4JDI8   A0A0N0PA22   A0A212EXX6   E2C5B5   Q1G0S7   A0A2A4JEF9   A0A2H1VTL5   K7JKJ7   A0A026WI38   A0A3L8DJR7   A0A212F4X5   A0A212FK70   A0A151X3A5   A0A3R7SKY0   A0A195EFW4   E1ZWJ9   A0A195BQ49   A0A3S2NWJ7   A0A158NTN1   A0A2A3EQJ4   A0A2A4JPM1   Q86G86   A0A0M8ZZN4   A0A2A4JQ16   A0A182PIT2   A0A088A7Y8   F7BIM6   A0A1W5BKC1   A0A1W2W4I7   A0A151IES7   A0A2H1VUW8   A0A2Z5WPE6   A0A195ERR3   A0A0P4W2E3   A0A0P4WDW2   A0A182SV92   A0A182I6G5   Q1G0S5   A0A2H1V8F5   A0A0L7RBD3   A0A182X2A4   A0A182L3X5   A0A182UU20   H9JB22   H9JLQ2   A0A154PLR9   A0A182NA97   A0A076JQH6   A0A194RNQ6   B7PQK7   Q7QIG1   V5H492   V5HB24   A0A0C9RXW5   T2ME15   A0A076JU39   T1KNR3   A0A182Y859   A0A2P6KP11   A0A3Q0K2L1   A0A3Q0K412   A0A3Q0K1F8   A0A182K183   A0A194QPI3   A0A182U096   A0A0K8VIA7   A0A0K8VM67   A0A034VIP4   A0A3Q0JU74   A0A1W2W9R0   A0A087TLZ9   W8BH52   W8AK36   A0A182Q4F5   A0A154PDS6   A0A194PIS8   A0A183V741   A0A3P7IMX9   A0A0C9RBY3   A0A1Y1LCJ3   A0A1Y1L8R1   A0A0P4VS48   A0A182MG76   A0A084WMT0   A0A0T6BDD0   A0A195E483   E0VV34   A0A0C9RXW8   A0A1I8PYL5   A0A1X7VKZ8  

PDB

4IRZ     E-value=3.63778e-18,     Score=223

KEGG

101743745    no KO assigned | (RefSeq) integrin alpha-IIb-like

GO

GO:0007155   GO:0008305   GO:0007229   GO:0016021   GO:0008270   GO:0004181   GO:0016020   GO:0004222   GO:0004621   GO:0007186   GO:0019001   GO:0031683   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

Subcellular location

Membrane  

Length:

295

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1071

Exp number, first 60 AAs:

0.00929

Total prob of N-in:

0.00418

outside

1  -  295

 

 

Pi

270.361613

Theta

178.262642

Tajima's D

1.440426

CLR

0.036639

CSRT

0.775011249437528

Interpretation

Uncertain