Gene

KWMTBOMO05481  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006628

Annotation

PREDICTED:_DNA_ligase_1_[Amyelois_transitella]

Location

Bomo_Chr10(-):3095709-3096880      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.573

CDS

ATGAACAAGATAAATAAAAGGATACCTGGTATCTTGCCGCCGCCGCCAAAAACAGAAATCGATGGAAAAATCACCGATCTATCGTTAAAAACTATTCCTGAGTTGCTTGAACTACGAGATAGACAAATTAAGTTATTAAACAATAAAAGTTTTATATCTAAACTAAGTGACAAAGGTGCTAAAATACAGATTTTGTACGATAAAATCTTATCCGAATTAAAAGCGAAGCAAGAGGAAGAAGATGCGTGTCGGATGTTCGAAAATATGAAACTGAATGGAATTGACAAACAATCCGTACAAGAATTAGAATGGACAGGTACAATTAAACAATCCACAGATTTAGATTCAGATGACGACAGTGACCCTGAAGATGTCCTAAAAATCTTGACTCAGAACTCATTCCATGAGAAAAAAATTAAGATTTTAGAACCTGAAAAACTTTCGATAACCCCTGAAGATCTAATCAAGATAGATGAGATCCCCCACGTAAGATATATAGTTAACAAAACGGAACACAACACCAAAGCCAAAGTAACGAGACAGTTTAAGCCACATAAGACCACAAACACAGATGTCCACAACCCAGAAAAGGAAATACAAAGAGGAAAGAACAAATGTAAAAAATGGGAGGTGACTGCTGCCACACCTCCTCCTACAATACATGGGCCAGCAAAAATATTATCCATAGAAGACTCATTAAAACTCCAGCAAGAACATAACTTACGTCTTAAAGAGGTGAATGCATTACATGCAGCTGAGAGGCTGGCTTCAATGGCTGGAGTCAAAATGAGTCAGTTGCCATTGGATTTATCAAGGTTTGGTTCATACCGAGACACCAATAGTGATGATTATGAGTCTGATGGTGAGGGCAGTGACAAAGAAGTTCATGATGAGGAGCCTGAGAAAGGAGGTGTCATATTTACCATAATGAAATAA

Protein

MNKINKRIPGILPPPPKTEIDGKITDLSLKTIPELLELRDRQIKLLNNKSFISKLSDKGAKIQILYDKILSELKAKQEEEDACRMFENMKLNGIDKQSVQELEWTGTIKQSTDLDSDDDSDPEDVLKILTQNSFHEKKIKILEPEKLSITPEDLIKIDEIPHVRYIVNKTEHNTKAKVTRQFKPHKTTNTDVHNPEKEIQRGKNKCKKWEVTAATPPPTIHGPAKILSIEDSLKLQQEHNLRLKEVNALHAAERLASMAGVKMSQLPLDLSRFGSYRDTNSDDYESDGEGSDKEVHDEEPEKGGVIFTIMK

Uniprot

H9JAT3   A0A2A4JQG7   A0A2H1WZP7   A0A194QNI2   A0A194RMJ9   S4PLR8   + More
A0A0L7LGT8   A0A212FEY3   A0A232F026   A0A0L7R7Y8   A0A310SJ23   E2BGD6   A0A1B6LRU8   E9J502   A0A1B6FK00   A0A026W427   A0A151X436   A0A195D7L3   A0A2P8XHS3   A0A1B6HU55   F4W840   A0A154PG54   A0A195BQY7   A0A158NDR6   A0A195CM47   A0A088AJB6   E2A0P1   A0A195EYI2   A0A0M8ZVZ8   A0A2A3E543   A0A0J7L400   A0A067R1P9   A0A1B6DJV0   A0A1B6DFG7   A0A2J7QT73   B0WJC9   A0A182H9P6   B4PMT4   A0A1W4W8C8   B3M2E6   C0PTU7   B3P357   A0A1Q3F305   Q9VDY6   Q8MQV7   B4IHX3   B4QTF5   A0A1A9X1J1   Q16Q56   A0A2J7QT62   B4LZ23   B4NIT9   A0A336LZE8   A0A1L8DFS4   B4JZ12   A0A2J7QT66   A0A1B6JBM5   A0A1B0CGN8   A0A1L8DFT5   Q293P4   B4GLT8   A0A146M9V5   A0A0M3QY44   A0A1J1IYF3   D3TN54   A0A2R7W8Y6   A0A1B0GB61   A0A1B0B375   A0A1Q3FT37   A0A069DSF7   A0A1S3H9I5   A0A1Q3FTE3   A0A0V0G968   A0A0P4VQ42   R4G7U0   A0A2G8K8A2   A0A2G8LAM0  

Pubmed

19121390    26354079    23622113    26227816    22118469    28648823    + More
20798317    21282665    24508170    30249741    29403074    21719571    21347285    24845553    26483478    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17510324    15632085    26823975    20353571    26334808    27129103    29023486   

EMBL

BABH01008444    NWSH01000782    PCG74241.1    ODYU01012326    SOQ58580.1    KQ458793    + More
KPJ05046.1    KQ459984    KPJ19053.1    GAIX01003890    JAA88670.1    JTDY01001178    KOB74635.1    AGBW02008896    OWR52278.1    NNAY01001464    OXU23880.1    KQ414637    KOC66959.1    KQ760629    OAD59731.1    GL448143    EFN85251.1    GEBQ01013539    JAT26438.1    GL768123    EFZ12072.1    GECZ01019259    JAS50510.1    KK107436    QOIP01000002    EZA50840.1    RLU26183.1    KQ982548    KYQ55177.1    KQ981153    KYN08875.1    PYGN01002084    PSN31549.1    GECU01029492    GECU01017272    GECU01012483    JAS78214.1    JAS90434.1    JAS95223.1    GL887888    EGI69710.1    KQ434899    KZC10835.1    KQ976424    KYM88374.1    ADTU01012806    KQ977600    KYN01542.1    GL435626    EFN72944.1    KQ981906    KYN33278.1    KQ435851    KOX70723.1    KZ288368    PBC26810.1    LBMM01000883    KMQ97293.1    KK852771    KDR16891.1    GEDC01011390    GEDC01007551    JAS25908.1    JAS29747.1    GEDC01012845    JAS24453.1    NEVH01011202    PNF31777.1    DS231959    EDS29103.1    JXUM01121234    KQ566477    KXJ70103.1    CM000160    EDW96004.1    CH902617    EDV43399.1    BT071792    ACN43728.1    CH954181    EDV48509.1    GFDL01013136    JAV21909.1    AE014297    AAF55653.1    AY122266    AAM52778.1    CH480840    EDW49490.1    CM000364    EDX12357.1    CH477760    EAT36522.1    PNF31779.1    CH940650    EDW68126.1    CH964272    EDW83803.2    UFQT01000320    SSX23190.1    GFDF01008772    JAV05312.1    CH916378    EDV98627.1    PNF31778.1    GECU01011158    JAS96548.1    AJWK01011500    GFDF01008778    JAV05306.1    CM000070    EAL29170.1    CH479185    EDW38512.1    GDHC01003052    JAQ15577.1    CP012526    ALC46979.1    CVRI01000064    CRL05245.1    EZ422856    ADD19132.1    KK854477    PTY16182.1    CCAG010019322    JXJN01007780    GFDL01004274    JAV30771.1    GBGD01002287    JAC86602.1    GFDL01004299    JAV30746.1    GECL01001760    JAP04364.1    GDKW01002668    JAI53927.1    ACPB03006763    GAHY01002137    JAA75373.1    MRZV01000793    PIK44193.1    MRZV01000146    PIK57307.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000037510    UP000007151    + More
UP000215335    UP000053825    UP000008237    UP000053097    UP000279307    UP000075809    UP000078492    UP000245037    UP000007755    UP000076502    UP000078540    UP000005205    UP000078542    UP000005203    UP000000311    UP000078541    UP000053105    UP000242457    UP000036403    UP000027135    UP000235965    UP000002320    UP000069940    UP000249989    UP000002282    UP000192221    UP000007801    UP000008711    UP000000803    UP000001292    UP000000304    UP000091820    UP000008820    UP000008792    UP000007798    UP000001070    UP000092461    UP000001819    UP000008744    UP000092553    UP000183832    UP000092444    UP000092460    UP000085678    UP000015103    UP000230750   

PRIDE

H9JAT3    Q9VDY6    Q8MQV7   

Pfam

PF15328   GCOM2

Interpro

IPR026213   GRINL1       

ProteinModelPortal

H9JAT3   A0A2A4JQG7   A0A2H1WZP7   A0A194QNI2   A0A194RMJ9   S4PLR8   + More
A0A0L7LGT8   A0A212FEY3   A0A232F026   A0A0L7R7Y8   A0A310SJ23   E2BGD6   A0A1B6LRU8   E9J502   A0A1B6FK00   A0A026W427   A0A151X436   A0A195D7L3   A0A2P8XHS3   A0A1B6HU55   F4W840   A0A154PG54   A0A195BQY7   A0A158NDR6   A0A195CM47   A0A088AJB6   E2A0P1   A0A195EYI2   A0A0M8ZVZ8   A0A2A3E543   A0A0J7L400   A0A067R1P9   A0A1B6DJV0   A0A1B6DFG7   A0A2J7QT73   B0WJC9   A0A182H9P6   B4PMT4   A0A1W4W8C8   B3M2E6   C0PTU7   B3P357   A0A1Q3F305   Q9VDY6   Q8MQV7   B4IHX3   B4QTF5   A0A1A9X1J1   Q16Q56   A0A2J7QT62   B4LZ23   B4NIT9   A0A336LZE8   A0A1L8DFS4   B4JZ12   A0A2J7QT66   A0A1B6JBM5   A0A1B0CGN8   A0A1L8DFT5   Q293P4   B4GLT8   A0A146M9V5   A0A0M3QY44   A0A1J1IYF3   D3TN54   A0A2R7W8Y6   A0A1B0GB61   A0A1B0B375   A0A1Q3FT37   A0A069DSF7   A0A1S3H9I5   A0A1Q3FTE3   A0A0V0G968   A0A0P4VQ42   R4G7U0   A0A2G8K8A2   A0A2G8LAM0  

KEGG

101743276    K21987 DNA-directed RNA polymerase II subunit GRINL1A | (RefSeq) uncharacterized LOC101743276

GO

GO:0016591   GO:0003899   GO:0016021   GO:0006807   GO:0003824   GO:0044237   GO:0016627   GO:0008152   GO:0016491  

Length:

311

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08866

outside

1  -  311

 

 

Pi

325.553741

Theta

218.883116

Tajima's D

1.502606

CLR

0.1457

CSRT

0.793510324483776

Interpretation

Uncertain