Gene

KWMTBOMO05474  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006632

Annotation

PREDICTED:_THO_complex_subunit_6_[Papilio_machaon]

Location

Bomo_Chr10(-):3015028-3017490      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.177

CDS

ATGTTGTATAACACTGTTTTATCTCAGACTTTATCGCCGTGTGGTAAATATTTAGTGGCCGGCAATATTTATGGAGATCTTGCTGTATTTGACCTAGATCGTATTTTAAATCCAGTACTAGAATTATTATCTGTTGAATACAACAAACCAAAACATATACATTCTATAGATTCAAAAAAACAGATTTGTAGTCTAGTTTCAACGGAAAAATTCCTTATAATTGGTACCGTTAATGAAATATGCGGATGGGACTGGAAGGCTGTTGTTTCTGTTAAATTATCAAAACCTGTATGGAGCATAAAGATTCCTTCCCAAACTTTTTTGGACTACAACGATGTGAACTGCATGTGGCTATCTCAAGACAGTGAGAAGCTGTATGCTGGTTGTGGAGACAATAATGTGTATGTGTTTAATTTGGAAGATGGGAGCCTTATTTCAACTTATAAGGGACATAATAATTTTATTCATTCTATTCATGGAAAAAACCAACAGATTATTTCAGCAGGCGAAGATGGTTTGGTTATGCTTTGGGATACTAGAAGTGGAAAATCACACAATAAATTGGAACCGCACACTAATAATAAGGTCAGCAGACCTGATATTGGCAAGTGGATTGGCTCAGCAGCTCTTGGAGATGACTGGATTGTATGCGGTGGTGGACCTCGATTGTCTCTGTGGCACCTTCGTTCATTAGATGCAGTGACAGTCTTTGACATTCCAGACAATGGGATTCATGTGTCATTCTTTCATGATGACTGTGTGTTTGCCGGTGGTACTTCTAAACATTTTTACCAAATGAGCTACTCGGGTGAGTCACCTGTACATATTTTGAGCTTTTAA

Protein

MLYNTVLSQTLSPCGKYLVAGNIYGDLAVFDLDRILNPVLELLSVEYNKPKHIHSIDSKKQICSLVSTEKFLIIGTVNEICGWDWKAVVSVKLSKPVWSIKIPSQTFLDYNDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGHNNFIHSIHGKNQQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVSRPDIGKWIGSAALGDDWIVCGGGPRLSLWHLRSLDAVTVFDIPDNGIHVSFFHDDCVFAGGTSKHFYQMSYSGESPVHILSF

Uniprot

A0A2H1VTF0   A0A2A4JD85   H9JAT7   A0A3S2L164   A0A194RSM0   A0A194QHL6   + More
S4PKL1   A0A1C9EGE9   A0A212FEX0   A0A0L7LFK2   I4DNV3   A0A067RKP7   A0A2J7PD33   A0A1B6M7J8   A0A1B6GSD9   D6X1D8   A0A0T6B391   A0A026VVS6   K7J0W9   A0A1B6E0L2   A0A0J7K7A1   A0A088AVT1   E2AHR5   A0A154PJ65   E2BKD8   E9IDD9   A0A1W4XVQ2   F4WJG8   A0A151WSW6   A0A195BXC0   A0A158NUZ8   A0A2A3ER10   A0A195CCJ8   A0A023F977   A0A195FPV7   A0A1Y1MU04   A0A310SXG4   Q1HQN6   A0A0P4VP96   R4G3V5   A0A182GZ12   A0A146LF16   A0A2J7PD29   A0A146LXI3   J3JWT5   A0A0L7RJC6   A0A0M8ZPV0   A0A182IVC2   B0WT62   A0A1B6HU62   N6TVZ5   A0A1Q3F0W3   A0A2H8TFY5   E0VTE8   Q7Q794   A0A182HM81   A0A182XCV2   A0A182LJT1   A0A2S2ND36   A0A182U2H5   A0A182V6V3   A0A3L8D576   A0A182NMC3   J9JTP5   A0A336LIV5   A0A336KSM1   A0A182Y0S1   A0A2S2QVP7   A0A2S2Q210   A0A182PVV6   A0A182K7T6   A0A224XW60   A0A232EWZ6   W5JJ98   A0A182MW69   A0A182WLU8   A0A182QM70   A0A2M4AU17   A0A084VD93   A0A182RC17   A0A182FHN5   Q1DGQ6   A0A1B6HZE2   A0A3B0J473   B4GR73   Q2M0R8   A0A182T2S5   D0QWS8   A0A1B0DBV2   A0A0L8FS36   T1J2Q9   A0A1I8QEU5   A0A210QNI2   A0A1W4UWB8   A0A0K8WB61   A0A1B0CPU8   A0A1B0FAW7   B3M7U8   A0A1A9VYR8  

Pubmed

19121390    26354079    23622113    22118469    26227816    22651552    + More
24845553    18362917    19820115    24508170    20075255    20798317    21282665    21719571    21347285    25474469    28004739    17204158    17510324    27129103    26483478    26823975    22516182    23537049    20566863    12364791    14747013    17210077    20966253    30249741    25244985    28648823    20920257    23761445    24438588    17994087    15632085    19859648    28812685   

EMBL

ODYU01004346    SOQ44121.1    NWSH01002033    PCG69363.1    BABH01008441    BABH01008442    + More
RSAL01000267    RVE43234.1    KQ459984    KPJ19061.1    KQ458793    KPJ05038.1    GAIX01004435    JAA88125.1    KX778609    AON96555.1    AGBW02008896    OWR52270.1    JTDY01001337    KOB74155.1    AK403156    BAM19593.1    KK852620    KDR20074.1    NEVH01026394    PNF14244.1    GEBQ01008078    JAT31899.1    GECZ01004430    JAS65339.1    KQ971372    EFA09504.1    LJIG01015997    KRT81923.1    KK107769    EZA47867.1    GEDC01005848    JAS31450.1    LBMM01012357    KMQ86262.1    GL439579    EFN66994.1    KQ434936    KZC11885.1    GL448783    EFN83862.1    GL762454    EFZ21414.1    GL888182    EGI65746.1    KQ982769    KYQ50887.1    KQ976401    KYM92603.1    ADTU01026865    KZ288198    PBC33656.1    KQ978023    KYM97951.1    GBBI01001249    JAC17463.1    KQ981335    KYN42625.1    GEZM01021271    JAV89039.1    KQ759817    OAD62766.1    DQ440408    CH477395    ABF18441.1    EAT41857.1    GDKW01002426    JAI54169.1    GAHY01001336    JAA76174.1    JXUM01098604    KQ564434    KXJ72283.1    GDHC01011825    JAQ06804.1    PNF14243.1    GDHC01006346    JAQ12283.1    BT127703    AEE62665.1    KQ414582    KOC70893.1    KQ435922    KOX68477.1    DS232080    EDS34205.1    GECU01029496    JAS78210.1    APGK01059247    APGK01059248    KB741292    KB632186    ENN70472.1    ERL89675.1    GFDL01013876    JAV21169.1    GFXV01001166    MBW12971.1    DS235763    EEB16654.1    AAAB01008960    EAA11942.4    APCN01004377    GGMR01002426    MBY15045.1    QOIP01000013    RLU15550.1    ABLF02027800    UFQS01004709    UFQT01004709    SSX16557.1    SSX35760.1    UFQS01000794    UFQT01000794    SSX06951.1    SSX27295.1    GGMS01012530    MBY81733.1    GGMS01002526    MBY71729.1    GFTR01004187    JAW12239.1    NNAY01001806    OXU22868.1    ADMH02001337    ETN62965.1    AXCM01001426    AXCN02000935    GGFK01010968    MBW44289.1    ATLV01011192    KE524650    KFB35937.1    CH900834    EAT32335.1    GECU01027659    JAS80047.1    OUUW01000002    SPP76277.1    CH479188    EDW40258.1    CH379069    EAL30862.2    FJ821035    ACN94776.1    AJVK01030295    KQ427298    KOF67220.1    JH431806    NEDP02002708    OWF50265.1    GDHF01004045    JAI48269.1    AJWK01022652    CCAG010011060    CH902618    EDV38821.1   

Proteomes

UP000218220    UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000037510    UP000027135    UP000235965    UP000007266    UP000053097    UP000002358    UP000036403    UP000005203    UP000000311    UP000076502    UP000008237    UP000192223    UP000007755    UP000075809    UP000078540    UP000005205    UP000242457    UP000078542    UP000078541    UP000008820    UP000069940    UP000249989    UP000053825    UP000053105    UP000075880    UP000002320    UP000019118    UP000030742    UP000009046    UP000007062    UP000075840    UP000076407    UP000075882    UP000075902    UP000075903    UP000279307    UP000075884    UP000007819    UP000076408    UP000075885    UP000075881    UP000215335    UP000000673    UP000075883    UP000075920    UP000075886    UP000030765    UP000075900    UP000069272    UP000268350    UP000008744    UP000001819    UP000075901    UP000092462    UP000053454    UP000095300    UP000242188    UP000192221    UP000092461    UP000092444    UP000007801    UP000078200   

PRIDE

H9JAT7   

Pfam

PF00400   WD40        + More
PF13570   PQQ_3
PF00107   ADH_zinc_N
PF08240   ADH_N
PF01431   Peptidase_M13
PF05649   Peptidase_M13_N

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR025666   PQQ-like_dom       
IPR018391   PQQ_beta_propeller_repeat       
IPR013154   ADH_N       
IPR020843   PKS_ER       
IPR011032   GroES-like_sf       
IPR013149   ADH_C       
IPR036291   NAD(P)-bd_dom_sf       
IPR018497   Peptidase_M13_C       
IPR000718   Peptidase_M13       
IPR008753   Peptidase_M13_N       
IPR024079   MetalloPept_cat_dom_sf       
IPR042089   Peptidase_M13_dom_2       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50129   SSF50129       
SSF51735   SSF51735       

Gene 3D

2.130.10.10     1.10.1380.10     3.40.390.10    

CDD

cd08662  M13

ProteinModelPortal

A0A2H1VTF0   A0A2A4JD85   H9JAT7   A0A3S2L164   A0A194RSM0   A0A194QHL6   + More
S4PKL1   A0A1C9EGE9   A0A212FEX0   A0A0L7LFK2   I4DNV3   A0A067RKP7   A0A2J7PD33   A0A1B6M7J8   A0A1B6GSD9   D6X1D8   A0A0T6B391   A0A026VVS6   K7J0W9   A0A1B6E0L2   A0A0J7K7A1   A0A088AVT1   E2AHR5   A0A154PJ65   E2BKD8   E9IDD9   A0A1W4XVQ2   F4WJG8   A0A151WSW6   A0A195BXC0   A0A158NUZ8   A0A2A3ER10   A0A195CCJ8   A0A023F977   A0A195FPV7   A0A1Y1MU04   A0A310SXG4   Q1HQN6   A0A0P4VP96   R4G3V5   A0A182GZ12   A0A146LF16   A0A2J7PD29   A0A146LXI3   J3JWT5   A0A0L7RJC6   A0A0M8ZPV0   A0A182IVC2   B0WT62   A0A1B6HU62   N6TVZ5   A0A1Q3F0W3   A0A2H8TFY5   E0VTE8   Q7Q794   A0A182HM81   A0A182XCV2   A0A182LJT1   A0A2S2ND36   A0A182U2H5   A0A182V6V3   A0A3L8D576   A0A182NMC3   J9JTP5   A0A336LIV5   A0A336KSM1   A0A182Y0S1   A0A2S2QVP7   A0A2S2Q210   A0A182PVV6   A0A182K7T6   A0A224XW60   A0A232EWZ6   W5JJ98   A0A182MW69   A0A182WLU8   A0A182QM70   A0A2M4AU17   A0A084VD93   A0A182RC17   A0A182FHN5   Q1DGQ6   A0A1B6HZE2   A0A3B0J473   B4GR73   Q2M0R8   A0A182T2S5   D0QWS8   A0A1B0DBV2   A0A0L8FS36   T1J2Q9   A0A1I8QEU5   A0A210QNI2   A0A1W4UWB8   A0A0K8WB61   A0A1B0CPU8   A0A1B0FAW7   B3M7U8   A0A1A9VYR8  

PDB

5WYK     E-value=1.35038e-06,     Score=123

KEGG

101736989    K13175 THO complex subunit 6 | (RefSeq) THO complex subunit 6

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0016491   GO:0004222   GO:0009408   GO:0008283   GO:0000347   GO:0016021   GO:0005515   GO:0006807   GO:0003824   GO:0044237   GO:0016627   GO:0008152  

Length:

279

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0392

Exp number, first 60 AAs:

0.03681

Total prob of N-in:

0.03963

outside

1  -  279

 

 

Pi

331.195074

Theta

166.607763

Tajima's D

2.212507

CLR

0.001006

CSRT

0.913704314784261

Interpretation

Uncertain