Gene

KWMTBOMO05472

Pre Gene Modal

BGIBMGA006633

Annotation

putative_axonemal_dynein_intermediate_chain_inner_arm_i1_[Operophtera_brumata]

Location

Bomo_Chr10(-):2990113-2992380      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.627 Nuclear   Reliability : 1.049

CDS

ATGTCGTCCAATATAATGCTACCGGAATCCCCGGATCCCAATACACGATCAGAAACTGTAGCCTCAAAGATCAGTTTCAATGAGCAGTCTTCATCTAGAACAAGCAAAGTTGCGTTTTCGTTTATGGAGAAAAGAGCAATGTATCGTGTTGTGGTTGACGGTGCCGATGTCACACCCGAAGACATTCTCGAGCCTGATTATGTAATGATGGTAGATACTTTTTCGCACGCTGCCTTTGAAAACAAACCCCGTTTTAAAAGTGAAACCGGGCTTAAAGCTACGTCTAAATCACGATCCGTTACGGAGGGTGCGATGACTGTTTTTGCAACGACAATCTCTCTTGACGACATTCATATCGATCACACGCTCAACACGAGCGAGGGTTTTATACCTGACGACGAAGTTCTCGAACAAGCGCCTTCAGCATTTTATCTCCCGAAAAGTAAACCAGTCATGTCTTATCCCCCAGAAATTTTCATTGTGCTTAAAGAGACAGAAACTTGCTATTTGTTCGAATTACCTAGTTTTGCTTTTGAGAAAGGTACTCCTGAAGCAGATAAGGTAGAAGAGGATAATGAGTTTTATCAATATATTACTGTTGGAAAAGGGAGAAACAGAAAAATGATTGTGGAGGAAACACAAACCGAAGAGTATATTGTACAAACACGACACACGCTCGCGTCGAGACCCCAAAGGAAAAATGCTATAGCATTCGCATCTTTATGGGACATGCACGATACCTACGCTAAGCTTGCAAACGTGAAAAAAGTAGAAGAACCTGATGAAATGGTGCTCTATCAATCAGCAGCACCCAATTTACTCAGAAAGAAGAAACTAAATGTTTTTGACGCTTCCTTGAAAAAAGGAAAATGTTTTGAAGAACTAGCGTCGACACCAGAATTCCTAGATGCGGTTTTATTGGCTGAACGTGTATTATCGACACTAGAATATTCTGAAGCTCAGAAGAAATACCGTGGCTTGGTTCGTATAGATCCACTCTCGTTAGATTTAGTGTATATTTACACAATGAAACCTTTATGGACTTTTGAATGTGAAGATACCATAAACCGCCCCATAACTGGAATCTCATTTAATCCGAAGAATGAGAATATATTAGCAGTCGCTCACGGGAAGTTCCGGTATGCTGAATGCTATAACGGCTTGGTCTGTATTTGGTGTACAAAAAATCCACTAAAACCCGAAAGAGTTTACCAATTCGAAGATCCATTAACATCATTGGCATTTGCCGAAAAAAACCCTAACTGGCTAGCTTGCGGTTTTGCTAACGGTGACGTATTGATTTTGGACATCACTTCATACACCACAAAAAGCATAGCGAAAAGTAAACGCGACACAAATCCCTGTTTTGAACCAATCTGGGTGACAAGTTGGCGATCAATTGATAAGGATAATGAATTCGTTATGACTTCATGTCAAGACGGAAGGATCAACAAATTTACTAACACTAAGACCCACGATTTTATATGTTCACCCATGATGAGAATATCAACCGTCGAAGGTAAGATGAAAGGGCTGGAAGCAACGAAAGCATGTTTGAAAGTAGACGTTCCTATAACGCGCTACCCAGCAGCGTTATGCATAAAATGGCACCCGAACGTTGAGCACGTGTATCTAGTTGGTACTGATGAAGGATGTATTCACAAATGTTCTACTCATTATCTGAATCAACACATCGAGGTCTTCAAAGCACATGCAGGTCCTGTTTACGGCATGGAGTACTCCCCTTTTATGAGTTCGTTGTTGGTGTCTTGCGGCGCAGACGGTGCTATAAGATTGTGGATAGAAGGCATGGATGACGTCATTATGACCTTAACATGTCCCGCTGCAGTATACGGTATCGCATTCTGTCCAATCAACTCCACGGTGATTTTATCAGTAAGCGGAAATATACTTTCCATTTGGGATCTGCGAAGGAAAACTCATATGCCGTGTGCGGAATACTCTTTTCCTAATAACGTTGTTCTGACGTACATTAAATTTGCCGCTTCGGGAGATAATGTCTTCGTTGGTGAGACGTCTGGACGCATTCACACATTCCATTTGGAAGACACTCCGATACCACCGTTTTACCAAAGAAAGATGTTAGACGAGGCGATCAAAAAAGCACTTTGCACGAGACCACAGCTCTTGAAGCAACTCGAAAAATTGGAAAAATTTAGAGAGAAGTATGCGAAATAA

Protein

MSSNIMLPESPDPNTRSETVASKISFNEQSSSRTSKVAFSFMEKRAMYRVVVDGADVTPEDILEPDYVMMVDTFSHAAFENKPRFKSETGLKATSKSRSVTEGAMTVFATTISLDDIHIDHTLNTSEGFIPDDEVLEQAPSAFYLPKSKPVMSYPPEIFIVLKETETCYLFELPSFAFEKGTPEADKVEEDNEFYQYITVGKGRNRKMIVEETQTEEYIVQTRHTLASRPQRKNAIAFASLWDMHDTYAKLANVKKVEEPDEMVLYQSAAPNLLRKKKLNVFDASLKKGKCFEELASTPEFLDAVLLAERVLSTLEYSEAQKKYRGLVRIDPLSLDLVYIYTMKPLWTFECEDTINRPITGISFNPKNENILAVAHGKFRYAECYNGLVCIWCTKNPLKPERVYQFEDPLTSLAFAEKNPNWLACGFANGDVLILDITSYTTKSIAKSKRDTNPCFEPIWVTSWRSIDKDNEFVMTSCQDGRINKFTNTKTHDFICSPMMRISTVEGKMKGLEATKACLKVDVPITRYPAALCIKWHPNVEHVYLVGTDEGCIHKCSTHYLNQHIEVFKAHAGPVYGMEYSPFMSSLLVSCGADGAIRLWIEGMDDVIMTLTCPAAVYGIAFCPINSTVILSVSGNILSIWDLRRKTHMPCAEYSFPNNVVLTYIKFAASGDNVFVGETSGRIHTFHLEDTPIPPFYQRKMLDEAIKKALCTRPQLLKQLEKLEKFREKYAK

Similarity

Belongs to the universal ribosomal protein uL23 family.

Uniprot

H9JAT8   A0A0L7LF19   A0A1C9EGD9   A0A212FEX4   A0A194RML2   A0A194QNH2   + More
A0A2A4JWC2   A0A2A4JXE5   A0A2H1W1J7   A0A2H1W1Z7   A0A2P8Z1A1   A0A195CCZ3   A0A151WSK9   E2AHR7   A0A0J7KJF0   A0A195FQ71   A0A310SYD6   A0A195BWE5   A0A026VSZ1   A0A158NUZ6   E9IDE1   U4UW31   A0A154PJ99   F4WXI0   A0A088AVI2   K7IPP0   A0A0L7RJ61   A0A232ENU0   A0A139WC78   A0A0N0U371   A0A1W4XIY1   Q175V4   A0A182GRE0   A0A182GBN8   A0A1Q3FSZ8   B0WT55   A0A1J1I5I4   A0A336MF52   A0A1B6EAA7   E0VLP7   A0A084W427   A0A1Y9IW76   A0A1I8P0R3   A0A182QUY5   A0A182FDI7   A0A182JJ59   A0A182ME34   A0A1A9WB47   A0A182YPL7   A0A182SAK2   A0A182PJU5   A0A2Y9D1H0   A0A1B6GFQ3   A0A1B6JS29   A0A1B0FBW5   A0A182VFI5   A0NEL3   A0A1A9UUL6   A0A182TX37   A0A182KPC1   A0A182K016   A0A0L0BME4   A0A182R737   A0A1B0AX94   A0A0L0BUB4   A0A182XM29   A0A182I1N9   A0A1A9WPR9   B4H3F4   Q2LZP2   A0A1I8N4X0   B4PDR9   B3NET5   B4HVY2   A0A0J9RM05   B4QMI8   A0A1I8MVP1   A0A1W4W687   D6W4W3   Q9W0A6   A0A3B0K0R9   B3M7R3   B4MND6   B4L966   Q29ET9   A0A1B0C359   A0A1A9V5V7   T1GR27   A0A1W4VNQ9   B4PC12   B4L903   A0A1I8PQ75   A0A0J9RKR0   B4HVB3  

Pubmed

19121390    26227816    22118469    26354079    29403074    20798317    + More
24508170    30249741    21347285    21282665    23537049    21719571    20075255    28648823    18362917    19820115    17510324    26483478    20566863    24438588    25244985    12364791    14747013    17210077    20966253    26108605    17994087    15632085    23185243    25315136    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867   

EMBL

BABH01008440    JTDY01001470    KOB73786.1    KX778609    AON96557.1    AGBW02008896    + More
OWR52268.1    KQ459984    KPJ19063.1    KQ458793    KPJ05036.1    NWSH01000454    PCG76301.1    PCG76304.1    ODYU01005770    SOQ46975.1    SOQ46976.1    PYGN01000245    PSN50258.1    KQ978023    KYM97953.1    KQ982769    KYQ50889.1    GL439579    EFN66996.1    LBMM01006506    KMQ90553.1    KQ981335    KYN42623.1    KQ759817    OAD62764.1    KQ976401    KYM92605.1    KK108145    QOIP01000010    EZA46852.1    RLU17915.1    ADTU01026863    GL762454    EFZ21532.1    KB632390    ERL94430.1    KQ434936    KZC11883.1    GL888425    EGI61050.1    KQ414582    KOC70895.1    NNAY01003071    OXU20024.1    KQ971371    KYB25578.1    KQ435922    KOX68482.1    CH477395    EAT41851.1    JXUM01082292    JXUM01082293    KQ563302    KXJ74096.1    JXUM01009334    KQ560281    KXJ83326.1    GFDL01004314    JAV30731.1    DS232080    EDS34198.1    CVRI01000042    CRK95557.1    UFQT01001082    SSX28796.1    GEDC01002429    JAS34869.1    DS235278    EEB14303.1    ATLV01020271    KE525297    KFB44971.1    AXCN02000403    AXCM01001951    GECZ01008511    JAS61258.1    GECU01005691    JAT02016.1    CCAG010023863    AAAB01008960    EAU76534.2    JRES01001641    KNC21300.1    JXJN01005154    JRES01001325    KNC23611.1    APCN01000070    CH479206    EDW30894.1    CH379069    EAL29465.2    KRT08035.1    CM000159    EDW92884.1    CH954178    EDV50208.1    CH480817    EDW50097.1    CM002912    KMY96921.1    CM000363    EDX08845.1    BT125013    ADI46809.1    AE014296    AAF47547.2    OUUW01000002    SPP76958.1    CH902618    EDV38786.1    CH963847    EDW72645.1    CH933816    EDW17241.1    CH379070    EAL29971.2    JXJN01024847    CAQQ02080280    EDW92667.1    EDW17178.1    KMY96563.1    EDW49878.1   

Proteomes

UP000005204    UP000037510    UP000007151    UP000053240    UP000053268    UP000218220    + More
UP000245037    UP000078542    UP000075809    UP000000311    UP000036403    UP000078541    UP000078540    UP000053097    UP000279307    UP000005205    UP000030742    UP000076502    UP000007755    UP000005203    UP000002358    UP000053825    UP000215335    UP000007266    UP000053105    UP000192223    UP000008820    UP000069940    UP000249989    UP000002320    UP000183832    UP000009046    UP000030765    UP000075920    UP000095300    UP000075886    UP000069272    UP000075880    UP000075883    UP000091820    UP000076408    UP000075901    UP000075885    UP000075884    UP000092444    UP000075903    UP000007062    UP000078200    UP000075902    UP000075882    UP000075881    UP000037069    UP000075900    UP000092460    UP000076407    UP000075840    UP000008744    UP000001819    UP000095301    UP000002282    UP000008711    UP000001292    UP000000304    UP000192221    UP000000803    UP000268350    UP000007801    UP000007798    UP000009192    UP000015102   

PRIDE

H9JAT8    D6W4W3    Q9W0A6   

Pfam

PF00400   WD40        + More
PF00071   Ras
PF00276   Ribosomal_L23
PF03939   Ribosomal_L23eN
PF00194   Carb_anhydrase

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR019775   WD40_repeat_CS       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR001014   Ribosomal_L23/L25_CS       
IPR012678   Ribosomal_L23/L15e_core_dom_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR005633   Ribosomal_L23/L25_N       
IPR013025   Ribosomal_L25/23       
IPR001148   CA_dom       
IPR036398   CA_dom_sf       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF52540   SSF52540       
SSF54189   SSF54189       
SSF51069   SSF51069       

Gene 3D

2.130.10.10     3.30.70.330     3.10.200.10    

ProteinModelPortal

H9JAT8   A0A0L7LF19   A0A1C9EGD9   A0A212FEX4   A0A194RML2   A0A194QNH2   + More
A0A2A4JWC2   A0A2A4JXE5   A0A2H1W1J7   A0A2H1W1Z7   A0A2P8Z1A1   A0A195CCZ3   A0A151WSK9   E2AHR7   A0A0J7KJF0   A0A195FQ71   A0A310SYD6   A0A195BWE5   A0A026VSZ1   A0A158NUZ6   E9IDE1   U4UW31   A0A154PJ99   F4WXI0   A0A088AVI2   K7IPP0   A0A0L7RJ61   A0A232ENU0   A0A139WC78   A0A0N0U371   A0A1W4XIY1   Q175V4   A0A182GRE0   A0A182GBN8   A0A1Q3FSZ8   B0WT55   A0A1J1I5I4   A0A336MF52   A0A1B6EAA7   E0VLP7   A0A084W427   A0A1Y9IW76   A0A1I8P0R3   A0A182QUY5   A0A182FDI7   A0A182JJ59   A0A182ME34   A0A1A9WB47   A0A182YPL7   A0A182SAK2   A0A182PJU5   A0A2Y9D1H0   A0A1B6GFQ3   A0A1B6JS29   A0A1B0FBW5   A0A182VFI5   A0NEL3   A0A1A9UUL6   A0A182TX37   A0A182KPC1   A0A182K016   A0A0L0BME4   A0A182R737   A0A1B0AX94   A0A0L0BUB4   A0A182XM29   A0A182I1N9   A0A1A9WPR9   B4H3F4   Q2LZP2   A0A1I8N4X0   B4PDR9   B3NET5   B4HVY2   A0A0J9RM05   B4QMI8   A0A1I8MVP1   A0A1W4W687   D6W4W3   Q9W0A6   A0A3B0K0R9   B3M7R3   B4MND6   B4L966   Q29ET9   A0A1B0C359   A0A1A9V5V7   T1GR27   A0A1W4VNQ9   B4PC12   B4L903   A0A1I8PQ75   A0A0J9RKR0   B4HVB3  

PDB

6F3A     E-value=3.46583e-12,     Score=176

KEGG

101736727    no KO assigned | (RefSeq) WD repeat-containing protein 78

GO

GO:0016021   GO:0045504   GO:0005858   GO:0003341   GO:0045503   GO:0007018   GO:0003924   GO:0005525   GO:0005840   GO:0003735   GO:0006412   GO:0008574   GO:0007283   GO:0005515   GO:0006807   GO:0003824   GO:0044237   GO:0016627   GO:0008152   GO:0016491  

Length:

732

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.70625

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00025

outside

1  -  732

 

 

Pi

325.325987

Theta

233.275602

Tajima's D

1.220923

CLR

0

CSRT

0.724763761811909

Interpretation

Possibly Positive selection