Silkworm Genome Informatics Database

Gene

KWMTBOMO05464 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006704

Annotation

Vasa_intronic_protein_[Operophtera_brumata]

Location

Bomo_Chr10(+):2843395-2844709 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.608

CDS

ATGGAGAATTCCTACGGTGTGGGAGTAGTGAACAGATACGCTCTTTTCTTGGACGATGAGACCGATCCTCTTGATGCGTTAAAAGCGCGAGAGCAGGCGAAGGAGCTCAAAAAGAAGACCAAAGAAGCCGAAAAAGAGAACAAAGGCAAGCCTGAACCCAAGCCCGCTAAAGGCGTAACCGTTCCCACCCGGAAGGGCATTAAGGAAACTCAAAATGTGAAGTCTCAAGACATCAAAAGTGGAGAACAACAGAAGGGTAAGGGACCTGCACGCCCGGTCGATCGTAATGTTGAGCGTCCGCCTCCGCGTCGTCGTGAAGATCGGCCGCAGAACGGTACCGCAGAAAACAAGGAAGGAGCTCCGCGGCCACCGAGACGCGAGTTCGGCGATCGTCGGCCTAACTTCAACGAGCGCCGCAATTTCAACGACAACAACCAGGACGGTGCAGAGCGTCGCGGTCCACCAAGACCACCGCGTGAGCCTCGTGAGGGACCGCGCGGGCCGCGTTCTTTTGACAATAGAGGCAAACGTGAGTTCGACCGAAGATCCGGCTCTGACAAAACCGGTGTGAAATCAGTCGACAAGAGGGAGGGCGCAGGTCCCCACAACTGGGGCACGATCAAGGACGATCTCGACGAGTTGAACAAAACCGGTTCTGAGGGTGAAACTACTGAAGAGAAGGCTCCTGAAGCCGGCGCTGGCGATGGACAAGTGCCTGAAACTGAACGTGCAGTGCCCGCTGAGGAAGAACCGCGTGAGTTGACACTCGATGAATACAAGGCTTTACGCAACGCGCAACGCACCGCTCCGCAGTACAATTTGAGGAAGGCAGGTGAGGGTGAAGACTTGAGCCAGTGGAAAAACCTGGTTCTGTTGGAACGCAAGAAGGAAGGTGACCGTGGTGATGATGAGGAAACTGACGAGGAATACGATCTGGCCGACTATCCACAGCGCGTGGGTCGCCAGAAGCGTTTGTTGGGCATTGAGTTCACATTTAGTGACGGTGCGAGGCGCGGCGGTGTGGGCGGGCGAGGCCGCGGACGGGGCCGGGGTCGCGGACGAGGAGTGCCGCGCGAGGAGCCGCCGGTCGTGGAGGAGCGCCCGGTACAGCGTCACCACGTGACGCCGCCGAAGGTCGACGACAGCAAGGATTTCCCCTCTCTCAGCTAG

Protein

MENSYGVGVVNRYALFLDDETDPLDALKAREQAKELKKKTKEAEKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQKGKGPARPVDRNVERPPPRRREDRPQNGTAENKEGAPRPPRREFGDRRPNFNERRNFNDNNQDGAERRGPPRPPREPREGPRGPRSFDNRGKREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDDLDELNKTGSEGETTEEKAPEAGAGDGQVPETERAVPAEEEPRELTLDEYKALRNAQRTAPQYNLRKAGEGEDLSQWKNLVLLERKKEGDRGDDEETDEEYDLADYPQRVGRQKRLLGIEFTFSDGARRGGVGGRGRGRGRGRGRGVPREEPPVVEERPVQRHHVTPPKVDDSKDFPSLS

Uniprot

H9JB09 I4DME5 A0A212FEW1 A0A194QI02 A0A2H1WD76 A0A194RNU0 + More
S4PMX0 A0A1C9EGE1 A0A0L7LVP4 A0A1E1WRM9

Pubmed

19121390 22651552 22118469 26354079 23622113 26227816 + More

EMBL

BABH01008431 KC759143 AGO02039.1 AK402463 BAM19085.1 AGBW02008896 + More
OWR52260.1 KQ458793 KPJ05024.1 ODYU01007862 SOQ51011.1 KQ459984 KPJ19074.1 GAIX01003320 JAA89240.1 KX778609 AON96563.1 JTDY01000038 KOB79256.1 GDQN01001361 JAT89693.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000053240 UP000037510

PRIDE

H9JB09

Pfam

PF04774 HABP4_PAI-RBP1 + More
PF16174 IHABP4_N

Interpro

IPR006861   HABP4_PAIRBP1-bd        + More
IPR032381   IHABP4_N
IPR039764   HABP4/SERBP1
IPR027205   SERBP1

ProteinModelPortal

H9JB09 I4DME5 A0A212FEW1 A0A194QI02 A0A2H1WD76 A0A194RNU0 + More
S4PMX0 A0A1C9EGE1 A0A0L7LVP4 A0A1E1WRM9

PDB

4V6X E-value=1.23484e-11, Score=168

KEGG

101741313 K13199 plasminogen activator inhibitor 1 RNA-binding protein | (RefSeq) VIG; plasminogen activator i

GO

GO:0003723

PANTHER

PTHR12299 PTHR12299:SF29

Length:

389

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00559

outside

1 - 389

Pi

305.609052

Theta

232.76436

Tajima's D

1.002291

CLR

0.012279

CSRT

0.664716764161792

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics