Silkworm Genome Informatics Database

Gene

KWMTBOMO05442 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006692

Annotation

PREDICTED:_hemocytin_isoform_X3_[Papilio_xuthus]

Location

Bomo_Chr10(+):2405333-2425247 View in EpiBrowser

Full name

Hemocytin

Alternative Name

Humoral lectin

Location in the cell

Extracellular Reliability : 1.982

CDS

ATGTACGGAGACGACGGCAACACCTTCTCGACTGTTGACGGACCTGATGGCAAACCTAAGATATTCCGTGGCCCGATTGACAACACTCATCCAGTAAAGCAGATGATAAGTCCTCCCATCGAGGCCAAGGTGGTCCGCATCAGACCCCTGACGTGGCACGATGAGATCTCCCTCAGGCTGGAGCTCATCGGATGCGCGGAGCCCCTCACCACAGAAACTTCGGAGCCTACTCCCACCTCTGAATCACCACTACAATGTACGGAGCCGCTTGGGTTGATCGGTGAGTTGCCGCTAGAGAACATTCAGGTCAGCTCCAATAGCGAGGAGAAGGACTACCTTTCCATCAACGGAAACCGAGGCTGGAAGCCGCTGTACAACACGCCGGGATGGGTCATGTTCGACTTCACAGGGCCCCGTAACATCACCGGTATCCTCACCAAAGGCGGAAACGACGGATGGGTCACCTCCTACAAAGTCCTTTACACCTCAGACTTCGAAACTTTCAACCCAGTCATCGACAAAGACGGCAAAGAGAAAATATTCCCGGCAAATTTCGATGGAATCGTATCGGTGACCAATGAGTTCCGCCCGCCCATACGTGCGAGATACTTGAAGGTTCTGCCGCAGAAATGGAACAAAAACATCGAATTGAGAATCGAACCCATTGGATGCTTCGAGCCATATCCTGAAATCCTACGATCGCTGCCAGAAGAGGAAGAAGGAAGGGAAGAACCCCAAGTCGTTAGAAAAGAATACGGGATGTCACAGGAGGGTGAAATGCCGAATTGTCACATCTGTCCCGGAGTAGAGGCGAAGGAGTGCACGTGCTCATACCCGGAATACTTTGACGGGGAGAACTGTGTGCCGAGGGCCGAGTGCCCTTGTGTCGAATCATTTATGACGTACCCTGTAGGATCTACGTTCAGGGGCGCGAACTGTGACGAATGTGTCTGCAAACTAGGAGGGACCACCGAATGTAAACCATTCAAAGAATGCCAGTGTGACGACGAATCCCTAGTACCGAAACTTTCTCCGACGACTTGCGACTGCACCTGCGAGCCCTGTACAAACGGTACCAAGATATGCAAGACGAGCAAGCTGTGCCTGGCTCTGGAGTCGTGGTGTGACGGCGTCCAGGACTGTCCGGACGACGAGCGGGACTGCACGACCTCGACCGCCCGGACAACGACCACGGAGCCGACCGTCGTCACTACCGTAGCGCCCACGCAGGCTGCCACTGCACCTCCCACGACCACGACCCCCAAGCCGGTCGTCGAATGTCCGAAAGTGGAATGTCCTCCCGGTTACATCATCAGTTACACCACCGGTTCATCATCGAGCTACTCCCGCGCTTTCTCATCAGACCTGCCTCCACCTAGGCCCAGGTACTCGTACCAGAGGTACTACAGAGGACGTTCCACAGGAGGGTACTCTGGTTACGCCAAGACTGGTTATTCAAAAGGAGGATTCTCTAAAGGCGGCTTCTCAAAAGGTGGATATGGTTACCCGTCGATTCCACGTTCGAACCAAGCCTTCACCCTGGACAAACCGGCCCTTACGAACAAACAGCCCACTTCGAAGGAGGAATGCGCCCAGTTCAAGTGTATACCCAAACTGCCGGCCTTCAAGCCCGGCGTGGTGCCGCCGCCGGTTGCGTGCTCCGTGGTCACGTGTCCCGCCGGATATACCCTCAAACTCGATAAAGTGCCGACCGGATATAACAAATGCCCGCAGTACGAATGCGTGCCACCACCAGAGCGTCCAGTTTTCTGCAACATGACCGGAAGGACTTTCAACACGTTCGACGGCATGGAGTATAAGTATGACGTCTGCTTCCACATGCTGGCTAGGGACAACAAATTCGACGCCTGGCTTATTATCGTCCGAAAGAACTGCCGCCTGGACGGTTGCACTAACGAATTGATCGTAATGCAAGACGATCAATTGATTCAAGTGAAGCCTAACATGATGGTCACGTACAACAACTACGAGTACACAATCGAACAGACAAAGAAGATTTGCTTCCAGAAGAACAGCTTCGATGTGGACCGCCTCGGGAACGGAATCTCTATCACGTCGAGAAAGTACAATTTCACTGTGCTCTTTAATAAAGAAGGAGATGTTAAGATTGGGGTATTGAAGAAGCACATGGGCGGAGTGGACGGTCTGTGCGGAGCCTATGATGGCTCGTTGGCCAACGAGCGGCGTCTCCCGGACGGTCGGGTCGCGACTTCGATAGACGAGTTCGGTCGCAGCTGGGCTAAGCCCGGCGTCCCCGCCGACGCCTGCGCCCCACGAGTCGCCTCCGCGCACAAACAGCGGAGAGCTTGGGACCTCTGTAACGTTATTACGTAA

Protein

MYGDDGNTFSTVDGPDGKPKIFRGPIDNTHPVKQMISPPIEAKVVRIRPLTWHDEISLRLELIGCAEPLTTETSEPTPTSESPLQCTEPLGLIGELPLENIQVSSNSEEKDYLSINGNRGWKPLYNTPGWVMFDFTGPRNITGILTKGGNDGWVTSYKVLYTSDFETFNPVIDKDGKEKIFPANFDGIVSVTNEFRPPIRARYLKVLPQKWNKNIELRIEPIGCFEPYPEILRSLPEEEEGREEPQVVRKEYGMSQEGEMPNCHICPGVEAKECTCSYPEYFDGENCVPRAECPCVESFMTYPVGSTFRGANCDECVCKLGGTTECKPFKECQCDDESLVPKLSPTTCDCTCEPCTNGTKICKTSKLCLALESWCDGVQDCPDDERDCTTSTARTTTTEPTVVTTVAPTQAATAPPTTTTPKPVVECPKVECPPGYIISYTTGSSSSYSRAFSSDLPPPRPRYSYQRYYRGRSTGGYSGYAKTGYSKGGFSKGGFSKGGYGYPSIPRSNQAFTLDKPALTNKQPTSKEECAQFKCIPKLPAFKPGVVPPPVACSVVTCPAGYTLKLDKVPTGYNKCPQYECVPPPERPVFCNMTGRTFNTFDGMEYKYDVCFHMLARDNKFDAWLIIVRKNCRLDGCTNELIVMQDDQLIQVKPNMMVTYNNYEYTIEQTKKICFQKNSFDVDRLGNGISITSRKYNFTVLFNKEGDVKIGVLKKHMGGVDGLCGAYDGSLANERRLPDGRVATSIDEFGRSWAKPGVPADACAPRVASAHKQRRAWDLCNVIT

Keywords

Cell adhesion Complete proteome Disulfide bond Glycoprotein Lectin Reference proteome Repeat Signal

Feature

chain Hemocytin

Uniprot

P98092 A0A212FES7

Pubmed

7873598 22118469

EMBL

D29738 D14035 AGBW02008897 OWR52242.1

Proteomes

UP000005204 UP000007151

PRIDE

P98092

Pfam

PF00094   VWD        + More
PF01826   TIL
PF00754   F5_F8_type_C
PF08742   C8

Interpro

IPR008979   Galactose-bd-like_sf        + More
IPR001846   VWF_type-D
IPR001007   VWF_dom
IPR014853   Unchr_dom_Cys-rich
IPR000421   FA58C
IPR006207   Cys_knot_C
IPR002919   TIL_dom
IPR012111   Hml
IPR036084   Ser_inhib-like_sf
IPR002172   LDrepeatLR_classA_rpt
IPR036508   Chitin-bd_dom_sf
IPR000742   EGF-like_dom
IPR013032   EGF-like_CS
IPR002557   Chitin-bd_dom

SUPFAM

SSF49785   SSF49785        + More
SSF57567   SSF57567
SSF57625   SSF57625

Gene 3D

2.60.120.260

CDD

cd00057 FA58C

ProteinModelPortal

P98092 A0A212FES7

PDB

4BXS E-value=2.0223e-20, Score=247

KEGG

692743 no KO assigned | (RefSeq) hemocytin

GO

GO:0007155 GO:0030246 GO:0006030 GO:0008061 GO:0005576 GO:0005515

Length:

784

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00263

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1 - 784

Pi

175.852233

Theta

159.010581

Tajima's D

0.051978

CLR

0.846661

CSRT

0.384130793460327

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
24402669	REPIQAVQVFGR	100.00	2e-07
24402669	VIYTSDFETFNPVIDK	95.24	2e-07
28467696	VIYQVGMTGIPIYNVNNNCSTGSNAIFISK	95.24	2e-07
26280517	ADEISQQTQTNFDK	100.00	7e-07
24402669	AEASTIYASFR	100.00	7e-07
28467696	AEAVTSFYNDVVGK	100.00	7e-07
26280517	DKIYDIAK	100.00	1e-06
24402669	ECQAIIIAPTR	100.00	1e-06
28467696	ECQAIIIAPTR	100.00	1e-06
26280517	STCEWEIETPPGTQIVIR	100.00	9e-04
24402669	SVYININTK	100.00	9e-04
28467696	SVYVGNVDYGATAEEIEQHFHGCGSINR	100.00	9e-04
29197581	KGDQCVIPADCIDCTCTGVGTPAK	100.00	9e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics