Gene

KWMTBOMO05437

Pre Gene Modal

BGIBMGA006690

Annotation

PREDICTED:_sin3_histone_deacetylase_corepressor_complex_component_SDS3_isoform_X2_[Plutella_xylostella]

Location

Bomo_Chr10(+):2269133-2276447      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.745

CDS

ATGCAACTGTTACGCGTCGCCTCGACTATGTCTTACCAAGGATCACCATATTCCGGCCCGGGGGATGAATACGATTTTGAAGACGATGGGTACGACGATTTAGACGACTTCAGAGACCGAGAAGAAACCGTCCCACCTCCTGCACCAGTGTTAGACAGCGACGAAGATACAGAAGAGGCAAGCGAGGCAGAACTACCGAACAACAATGAACCTCTGGAAGTTAAAGAACAAATATATCAAGATAAACTTGCCAATTTCAAGAAGCAACTGCAGCAATTGGAAGACAGCCTCCATCCTGAGTTCTTGCGTCGGGTGAAGAGGTTAGAACATCAGTTACAAGAGAGGTTACGATTGAACAGAATATACAAAGACCACATGTATGAAGTGGTAGACAGGGAGTATGTCGCCGAAAAAAAAGCTGCAGCTAAAGAATTTGAAGAGAAGAAGGTTGAGTTACGCGAGAACTTGCTCACCGATTTTGAAGACAAGAGGAAACTGATTGAGAGTGAACGACACAGCATGGAATTGAATGGTGATTCAATGGAGGTGAAACCGGTAATGAAGAGAATATTACGGAGGCGAGCCAACGAGCCGGCCCCGGCGCCGGAGAAGCGCCGCAAGCCGCTGGCCACCACGCTCACGTTCCAGCTGGACGAGCGCGACATCGAGGCCGACCTCCGCGCCATACAGCGGACCACCCCGCCCAGGCATCCCGTGCAGCACAACACCGCGCAGCCCAGGAAACATCTCAACTCTGGCAGTACATGCGACTCCCCTATTCGGGAGAGCGAGACCTGCGACACTCGTGTGGAAGACGGCAAGCTGTTGTACGAGAGGCGCTGGTACCACCGCGGGCAAAGCGTCTACGTCGAGGGACGGGACCTTCCCAAGTTCCCCGGACACATCCACGCCATTACAGATGAGGCGATATGGGTAAAGAAGACGAATGTGGAACGAATAAGGATATACATATCGCAGTTAGCGCGCGGTAAAGTGACGTTAAAACGACGAGCGTCGTAA

Protein

MQLLRVASTMSYQGSPYSGPGDEYDFEDDGYDDLDDFRDREETVPPPAPVLDSDEDTEEASEAELPNNNEPLEVKEQIYQDKLANFKKQLQQLEDSLHPEFLRRVKRLEHQLQERLRLNRIYKDHMYEVVDREYVAEKKAAAKEFEEKKVELRENLLTDFEDKRKLIESERHSMELNGDSMEVKPVMKRILRRRANEPAPAPEKRRKPLATTLTFQLDERDIEADLRAIQRTTPPRHPVQHNTAQPRKHLNSGSTCDSPIRESETCDTRVEDGKLLYERRWYHRGQSVYVEGRDLPKFPGHIHAITDEAIWVKKTNVERIRIYISQLARGKVTLKRRAS

Uniprot

H9JAZ5   A0A2A4JIY3   A0A2H1X2B3   A0A212F1N9   A0A194RMN8   A0A194QND9   + More
A0A1C9EGH6   A0A1Y1L8Y1   A0A2J7PJV2   E2BWV9   A0A151XE53   A0A195DV81   D6X120   A0A087ZY99   A0A2A3EEK0   A0A067R4D4   A0A158NJV3   A0A195BJ01   A0A1W4W898   A0A151I810   A0A195F4M3   A0A026WPR2   A0A154PBD4   E1ZWX4   F4WIQ1   A0A0L7QSQ7   A0A0N0U601   A0A1A9ZBC8   D3TQ14   A0A1B0BPE2   A0A0C9QI57   Q17JC1   A0A1A9WB20   A0A0K8TKV2   A0A0L0BTB7   A0A1A9UHZ2   A0A0C9RM01   A0A1I8M6V3   N6TTU8   A0A1I8QDL0   A0A0A9XBZ9   A0A2R7WXH8   A0A336L954   A0A336MNU0   E0VKY1   Q29IV4   B4HAQ1   A0A1B0DR87   A0A069DSQ6   A0A224XFW2   B4R7S0   A0A0M4EJY1   A0A1L8DX93   A0A1L8DXC5   B4I776   B3NVQ1   A0A0A1XSE6   B4PZG2   Q9VWG2   B3MQA3   Q8MS11   B4MAS5   A0A034VGZ9   B4JME6   A0A0P4VXM2   R4G4R5   A0A0K8VEB5   W8BAJ2   A0A1W4VHE6   A0A1B6GLD0   A0A310SDE6   W8C1X1   A0A1B6I5G2   B4L810   B4NC23   A0A182I9K6   A0A293M384   A0A182LTK5   A0A1S3HIU2   A0A131XIL9   A0A224Z6M2   A0A1S3HK43   A0A131YA89   A0A2R5L6U3   A0A1A8B1Q6   A0A1A8MII7   A0A1A8IKM5   A0A1A8QMD8   A0A3Q3KXX4   A0A3Q0EG34   A0A023GIE6   G3MQ41   A0A023FLG0   A0A1E1XG82   A0A3P8QZJ0   I7GJR2   A0A1A8GIC7   A0A1A8U260   A0A1A8DCW4   A0A3Q2WP85  

Pubmed

19121390    22118469    26354079    28004739    20798317    18362917    + More
19820115    24845553    21347285    24508170    30249741    21719571    20353571    17510324    26369729    26108605    25315136    23537049    25401762    26823975    20566863    15632085    17994087    26334808    25830018    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    27129103    24495485    28049606    28797301    22216098    28503490    17194215   

EMBL

BABH01008382    BABH01008383    NWSH01001403    PCG71362.1    ODYU01012946    SOQ59500.1    + More
AGBW02010841    OWR47652.1    KQ459984    KPJ19093.1    KQ458793    KPJ05001.1    KX778609    AON96585.1    GEZM01063114    JAV69298.1    NEVH01024944    PNF16613.1    GL451188    EFN79823.1    KQ982254    KYQ58600.1    KQ980304    KYN16756.1    KQ971367    EFA09398.1    KZ288266    PBC30140.1    KK852704    KDR18046.1    ADTU01018395    ADTU01018396    KQ976465    KYM84337.1    KQ978390    KYM94274.1    KQ981820    KYN35336.1    KK107135    QOIP01000006    EZA58047.1    RLU21364.1    KQ434868    KZC09219.1    GL434909    EFN74314.1    GL888176    EGI65987.1    KQ414756    KOC61665.1    KQ435760    KOX75602.1    CCAG010013939    EZ423516    ADD19792.1    JXJN01017891    GBYB01014403    JAG84170.1    CH477233    EAT46783.1    GDAI01002644    JAI14959.1    JRES01001383    KNC23233.1    GBYB01014402    JAG84169.1    APGK01019138    KB740092    KB632429    ENN81468.1    ERL95425.1    GBHO01026453    GBRD01007184    GDHC01005911    JAG17151.1    JAG58637.1    JAQ12718.1    KK855781    PTY23870.1    UFQS01002611    UFQT01002611    SSX14356.1    SSX33767.1    UFQT01001300    SSX29897.1    DS235255    EEB14037.1    CH379063    EAL32549.1    CH479242    EDW37662.1    AJVK01008968    GBGD01002182    JAC86707.1    GFTR01005060    JAW11366.1    CM000366    EDX18403.1    CP012528    ALC49554.1    GFDF01003072    JAV11012.1    GFDF01003179    JAV10905.1    CH480823    EDW56174.1    CH954180    EDV46716.1    GBXI01000819    JAD13473.1    CM000162    EDX02118.1    AE014298    BT044333    AAF48979.1    ACH92398.1    CH902621    EDV44529.1    AY119157    AAM51017.1    CH940655    EDW66334.2    GAKP01017565    JAC41387.1    CH916371    EDV92471.1    GDKW01001184    JAI55411.1    ACPB03000489    GAHY01000551    JAA76959.1    GDHF01015045    JAI37269.1    GAMC01010853    GAMC01010849    JAB95702.1    GECZ01006520    GECZ01004035    JAS63249.1    JAS65734.1    KQ773953    OAD52339.1    GAMC01010851    GAMC01010847    JAB95704.1    GECU01025537    JAS82169.1    CH933814    EDW05585.1    CH964239    EDW82382.1    APCN01000989    GFWV01009822    MAA34551.1    AXCM01001185    GEFH01002516    JAP66065.1    GFPF01011775    MAA22921.1    GEFM01000338    JAP75458.1    GGLE01001100    MBY05226.1    HADY01022714    SBP61199.1    HAEF01015035    SBR56194.1    HAED01011402    SBQ97721.1    HAEH01012233    SBR94279.1    GBBM01001744    JAC33674.1    JO843992    AEO35609.1    GBBK01002979    JAC21503.1    GFAC01001082    JAT98106.1    AB170399    BAE87462.1    HAEB01013370    HAEC01003468    SBQ71545.1    HAEJ01001703    SBS42160.1    HADZ01017799    HAEA01003452    SBQ31932.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000235965    + More
UP000008237    UP000075809    UP000078492    UP000007266    UP000005203    UP000242457    UP000027135    UP000005205    UP000078540    UP000192223    UP000078542    UP000078541    UP000053097    UP000279307    UP000076502    UP000000311    UP000007755    UP000053825    UP000053105    UP000092445    UP000092444    UP000092460    UP000008820    UP000091820    UP000037069    UP000078200    UP000095301    UP000019118    UP000030742    UP000095300    UP000009046    UP000001819    UP000008744    UP000092462    UP000000304    UP000092553    UP000001292    UP000008711    UP000002282    UP000000803    UP000007801    UP000008792    UP000001070    UP000015103    UP000192221    UP000009192    UP000007798    UP000075840    UP000075883    UP000085678    UP000261640    UP000189704    UP000265100    UP000264840   

PRIDE

H9JAZ5    Q9VWG2    Q8MS11   

Pfam

PF08598   Sds3        + More
PF03501   S10_plectin

Interpro

IPR013907   Sds3        + More
IPR005326   S10_plectin_N       
IPR036388   WH-like_DNA-bd_sf       
IPR037447   Rps10       

Gene 3D

1.10.10.10    

ProteinModelPortal

H9JAZ5   A0A2A4JIY3   A0A2H1X2B3   A0A212F1N9   A0A194RMN8   A0A194QND9   + More
A0A1C9EGH6   A0A1Y1L8Y1   A0A2J7PJV2   E2BWV9   A0A151XE53   A0A195DV81   D6X120   A0A087ZY99   A0A2A3EEK0   A0A067R4D4   A0A158NJV3   A0A195BJ01   A0A1W4W898   A0A151I810   A0A195F4M3   A0A026WPR2   A0A154PBD4   E1ZWX4   F4WIQ1   A0A0L7QSQ7   A0A0N0U601   A0A1A9ZBC8   D3TQ14   A0A1B0BPE2   A0A0C9QI57   Q17JC1   A0A1A9WB20   A0A0K8TKV2   A0A0L0BTB7   A0A1A9UHZ2   A0A0C9RM01   A0A1I8M6V3   N6TTU8   A0A1I8QDL0   A0A0A9XBZ9   A0A2R7WXH8   A0A336L954   A0A336MNU0   E0VKY1   Q29IV4   B4HAQ1   A0A1B0DR87   A0A069DSQ6   A0A224XFW2   B4R7S0   A0A0M4EJY1   A0A1L8DX93   A0A1L8DXC5   B4I776   B3NVQ1   A0A0A1XSE6   B4PZG2   Q9VWG2   B3MQA3   Q8MS11   B4MAS5   A0A034VGZ9   B4JME6   A0A0P4VXM2   R4G4R5   A0A0K8VEB5   W8BAJ2   A0A1W4VHE6   A0A1B6GLD0   A0A310SDE6   W8C1X1   A0A1B6I5G2   B4L810   B4NC23   A0A182I9K6   A0A293M384   A0A182LTK5   A0A1S3HIU2   A0A131XIL9   A0A224Z6M2   A0A1S3HK43   A0A131YA89   A0A2R5L6U3   A0A1A8B1Q6   A0A1A8MII7   A0A1A8IKM5   A0A1A8QMD8   A0A3Q3KXX4   A0A3Q0EG34   A0A023GIE6   G3MQ41   A0A023FLG0   A0A1E1XG82   A0A3P8QZJ0   I7GJR2   A0A1A8GIC7   A0A1A8U260   A0A1A8DCW4   A0A3Q2WP85  

KEGG

101739420    K19201 Sin3 histone deacetylase corepressor complex component SDS3 | (RefSeq) sin3 histone deacetyla

GO

GO:0042826   GO:0016575   GO:0070822   GO:0000122   GO:0016787  

PANTHER

PTHR21964   PTHR12146  

Length:

339

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02370

outside

1  -  339

 

 

Pi

272.184905

Theta

206.163869

Tajima's D

0.922086

CLR

0.004022

CSRT

0.64176791160442

Interpretation

Uncertain