Gene

KWMTBOMO05434

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr10(+):2148583-2149854      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.219 Nuclear   Reliability : 1.115 PlasmaMembrane   Reliability : 1.041

CDS

ATGTACATTTGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCAGATGATAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACGTTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTGCTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAACATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCTCGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MYICFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDVSSDVQFRSHLEGKAKLASKMLGVLNRAKRCFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPTSRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSSVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   A0A3S2LP03   A0A3S2LQP1   A0A3S2NMS5   A0A3S2NTH0   A0A3S2NHP4   + More
A0A3S2NMX8   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A1E1XGQ7   A0A3S2TFH4   A0A131Y4I8   A0A147BU27   A0A0P4VTV9   A0A1E1X2T1   A0A1E1XNL1   A0A131XQR9   A0A0P4VVV8   A0A2B4RTL1   A0A147BQ97   A0A147BJQ0   A0A131Y4Q4   A0A2G8KET5   A0A2H9T4Q5   A0A1E1XPS6   A0A147BJ69   A0A1E1X2P5   A0A131XRE4   A0A090XE26   A0A147BNQ9   A0A1E1XNW6   A0A2H9T4Y5   A0A131Y3E3   A0A131XT39   A0A147BLD9   A0A3M0KHF4   A0A1E1XN74   A0A147BBR8   A0A3M0J7Q7   A0A1G4M5I2   A0A2I0UC10   A0A3M0JFD2   A0A147BNC9   A0A3M0LRW4   W4ZGQ7   W4Z0S9   A0A2H9T3F5   A0A147BLD0   W4ZIH4   A0A3M0L9G9   A0A0P4VPK5   A0A147BMF5   A0A1E1XM20   A0A3M0KCP4   A0A1G4M3N1   A0A2H9T2R7   A0A2H9T2Z5   K7F115   W4Y3F1   A0A147BMA3   K7EW64   K7F016   K7EZ61   W4YEI4   K7EWB0   A0A3M0JRY7   A0A1E1X2R3   K7EYW0   K7F0H6   Q8WS60   A0A2S6A1F0   K7EZY9   K7F0V3   K7F012  

Pubmed

30148503    28503490    29209593    29652888    29023486    29150518    + More
25970599    17381049    11733140   

EMBL

AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    RSAL01000422    RVE41792.1    + More
RSAL01000002    RVE54942.1    RSAL01000090    RVE48098.1    RSAL01003136    RVE40332.1    RVE55041.1    RVE55094.1    ODYU01002162    SOQ39302.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    GFAC01000919    JAT98269.1    RSAL01000193    RVE44603.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GDRN01111334    JAI56796.1    GFAC01005646    JAT93542.1    GFAA01002514    JAU00921.1    GEFM01006417    JAP69379.1    GDRN01111277    JAI56804.1    LSMT01000297    PFX20951.1    GEGO01002473    JAR92931.1    GEGO01004433    JAR90971.1    GEFM01002324    JAP73472.1    MRZV01000639    PIK46517.1    NSIT01000239    PJE78188.1    GFAA01002385    JAU01050.1    GEGO01004630    JAR90774.1    GFAC01005665    JAT93523.1    GEFM01005882    JAP69914.1    GBIH01002577    JAC92133.1    GEGO01003312    JAR92092.1    GFAA01002479    JAU00956.1    NSIT01000218    PJE78268.1    GEFM01002419    JAP73377.1    GEFM01006421    JAP69375.1    GEGO01003794    JAR91610.1    QRBI01000112    RMC10390.1    GFAA01002657    JAU00778.1    GEGO01007187    JAR88217.1    QRBI01000171    RMB96954.1    FLMD02000280    SCV66640.1    KZ505886    PKU43598.1    QRBI01000146    RMB99817.1    GEGO01003111    JAR92293.1    QRBI01000093    RMC21757.1    AAGJ04096877    AAGJ04088192    NSIT01000412    PJE77717.1    GEGO01004132    JAR91272.1    AAGJ04095885    RMC21953.1    GDRN01111278    JAI56803.1    GEGO01003427    JAR91977.1    GFAA01003161    JAU00274.1    QRBI01000116    RMC08860.1    FLMD02000154    SCV66010.1    NSIT01000538    PJE77518.1    NSIT01000477    PJE77602.1    AGCU01164164    AAGJ04090645    GEGO01003518    JAR91886.1    AGCU01055496    AGCU01148809    AGCU01081420    AAGJ04103823    AGCU01168427    QRBI01000131    RMC03475.1    GFAC01005670    JAT93518.1    AGCU01046616    AGCU01096477    AH011247    AAL40415.1    PSZC01000087    PPJ25136.1    AGCU01064953    AGCU01111641    AGCU01135984   

Proteomes

UP000283053    UP000225706    UP000230750    UP000269221    UP000007110    UP000007267    + More
UP000239874   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF04939   RRS1
PF00458   WHEP-TRS

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR007023   Ribosom_reg       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR019787   Znf_PHD-finger       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF47060   SSF47060       
SSF57903   SSF57903       

Gene 3D

3.60.10.10     3.30.70.330     3.30.40.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2LP03   A0A3S2LQP1   A0A3S2NMS5   A0A3S2NTH0   A0A3S2NHP4   + More
A0A3S2NMX8   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A1E1XGQ7   A0A3S2TFH4   A0A131Y4I8   A0A147BU27   A0A0P4VTV9   A0A1E1X2T1   A0A1E1XNL1   A0A131XQR9   A0A0P4VVV8   A0A2B4RTL1   A0A147BQ97   A0A147BJQ0   A0A131Y4Q4   A0A2G8KET5   A0A2H9T4Q5   A0A1E1XPS6   A0A147BJ69   A0A1E1X2P5   A0A131XRE4   A0A090XE26   A0A147BNQ9   A0A1E1XNW6   A0A2H9T4Y5   A0A131Y3E3   A0A131XT39   A0A147BLD9   A0A3M0KHF4   A0A1E1XN74   A0A147BBR8   A0A3M0J7Q7   A0A1G4M5I2   A0A2I0UC10   A0A3M0JFD2   A0A147BNC9   A0A3M0LRW4   W4ZGQ7   W4Z0S9   A0A2H9T3F5   A0A147BLD0   W4ZIH4   A0A3M0L9G9   A0A0P4VPK5   A0A147BMF5   A0A1E1XM20   A0A3M0KCP4   A0A1G4M3N1   A0A2H9T2R7   A0A2H9T2Z5   K7F115   W4Y3F1   A0A147BMA3   K7EW64   K7F016   K7EZ61   W4YEI4   K7EWB0   A0A3M0JRY7   A0A1E1X2R3   K7EYW0   K7F0H6   Q8WS60   A0A2S6A1F0   K7EZY9   K7F0V3   K7F012  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0046872  

PANTHER

PTHR13288   PTHR17602  

Length:

351

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17917

Exp number, first 60 AAs:

0.17917

Total prob of N-in:

0.01544

outside

1  -  351

 

 

Pi

121.31231

Theta

107.772915

Tajima's D

0.394112

CLR

11.593771

CSRT

0.490675466226689

Interpretation

Uncertain