SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05433
Pre Gene Modal
BGIBMGA008577
Annotation
PREDICTED:_uncharacterized_protein_LOC105841817_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.416 Nuclear   Reliability : 2.046
 

Sequence

CDS
ATGATGCAAGACCACTTCGACCTGGTTATTAAATTTGAAATGGAAAGCAAAAAGGGACCAGCTGAAGCCGGTATCCGGCTATGGCAACTTATAAAGAAGATTCCCGACGCTAATGTGCCAGAACAAATAGCCACCGGATTTGTTATATCAATACTGTCGCAGTGTGATGAAAGAATCCGTCGGGAATTGAACTCTGTCGTTATTACCACAAAAAATCGTCTATTTCACACATTACGTGGCTTTACCCTCAAAAAAAAAACGAAGATCCTGATAAAGAACCAAAACGCTCTCGAAGTTTTTTTCCGTGGAAGCTGCCATTTCTGCGGAAAACCTGGGCATCGTGCCGAAGGGTGTTGCGACAGATACTGCTCTCAAACTTTTTTCGATATTCCAGCAAAACCTGAACAACCTCCTCATCCGTGGGCGCCCGGCTCTCGCCTGCAAGTCAGCGGTTACGTGTGCGGTGATGCGAGTCATGTAGCTTCTGGGTGTTCCATGCGCTACAAGAAGAAAAACGACACTGCTCCAGGTGCTGTGGCAGGTGCAACCAGAGACGTCAACGTGTGTTCCAGAGCTTCAGTGTGTTACAGATAA
Protein
MMQDHFDLVIKFEMESKKGPAEAGIRLWQLIKKIPDANVPEQIATGFVISILSQCDERIRRELNSVVITTKNRLFHTLRGFTLKKKTKILIKNQNALEVFFRGSCHFCGKPGHRAEGCCDRYCSQTFFDIPAKPEQPPHPWAPGSRLQVSGYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVCSRASVCYR

Summary

Pfam
PF00098   zf-CCHC        + More
PF17921   Integrase_H2C2
PF00078   RVT_1
PF17917   RT_RNaseH
PF17919   RT_RNaseH_2
PF00665   rve
Interpro
IPR001995   Peptidase_A2_cat        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR041373   RT_RNaseH       
IPR041588   Integrase_H2C2       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
SUPFAM
SSF50630   SSF50630        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
197
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00233
Exp number, first 60 AAs:
0.00124
Total prob of N-in:
0.05482
outside
1  -  197
 
 

Population Genetic Test Statistics

Pi
16.556408
Theta
18.98083
Tajima's D
-0.387756
CLR
294.560354
CSRT
0.270336483175841
Interpretation
Uncertain
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