Gene

KWMTBOMO05431  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006649

Annotation

Uncharacterized_protein_OBRU01_02299_[Operophtera_brumata]

Location

Bomo_Chr10(-):2012290-2014215      View in EpiBrowser

Full name

Protein CLP1 homolog      

Location in the cell

Nuclear   Reliability : 2.236

CDS

ATGTCGTCCGAAATGTTAATACGAGAGCCACCGCCCACAAGAATGATTTTCAAGGCAATCGACGAACAAAGTTCTGAGGAGCCTCCGATGGAGGAATGGTCTTCGTGTCAACTGGAAGTCAATGAAACTAATGTGAAGAAAGCCTTGTTTCAAGAGGGTCTTTATGCACCAGGAAGTGGAGAAATATGCACTAAATACATTACTGTTTCTGACAGCTCAGTTCTAAGACACCCATATTTTAACTACCCTGGAGTCATCGATCCTGGTATTGAAAAAGCTTTGCTACAACCAGAACCTCCTATAATATACCCTGACGATGGTCAGGTATTATATCTTGAGCTGTGCAAAGAAATGGGACAGTGCCCAGTTAGAATGTTCCATAAAGGACTACTGAACGATGTGATAGATTTGAGGTATTACGGTGTAAATCCAAACAGTGTCCGATGCATGGGCATTGCAATGAAATTTAATAATTTTGTCAAAGTTTTAAATTTAACCGATAATTTCTTGAATAACGACGCTTGTTACCACCTTGGTGAGATGCTTACTACGAATTCGTGTTTACGAGAATTGAATCTTTGCGGATGTCGCATTGGTGTTGAAGGTCTTCGAAGATTACTTCCCGGCCTCATCGTAAATAGATCTTTGAAAGTATTGAATCTTAATAAAAATCAGCTGGGTGATACTGGGATACAATTAGTAGCAAGAGGTATAGTTCGCGGTATGGACGTCGAAAATTTATATCTTAGTTATAATGATCTCAGTGCTAATGCAGCCAATATATTAACTGAAGCTTTCAATAGGCACAACAAACTTGTTTTACTAGATCTGTCTTGGAATAATCTGTACTCGCCTGCAGAGGTATACGTTTTATTAACTAAACTTGCTCAAAATGAATTTTTGCAGACATTAGATTTATCTTGGAATTCTTTAGCCGGAGCCAGGATCGGTAATGCTATAAAAATATTAATGAAAGCTCCTAATTTGCAAAATTTGAACTTAAGCAACAATAGATTAACCGGTGATGCTATATCCAACCTGCTGAAGAATATAGAAAAACCCCAGAATCTCGTTCTGAATCTCTCGTACAATCCTATGACACCAACTGATGCCTTATCCATCCTTAATAAGTTGAAGTTACCTGAAGTGAAACTAAATACACTTTTGTTAGACAACGTTTTAGTGGGGTGCGAATTTTTGGAGGCTCTTAAAGAAATCAGAGAACTTGAATTTCGTAGGGATACAATCATAACCCACGGAGGATTAACTAATGGCAACAAGCCTACTGGACCTGATCCTCGTGATGTGGTGTTAAACAGAGCTGATTTTCTGTGCCTGAATCCAAAGAAACAACCTATAGACATTGCTTTAGTATTATTGAAGCTACTAAAAACAGGTAACAAGATTATGAGTATAAAGGACTTTGCGAAAACTCTTCGAAGGTCCGGTGTTCCTCTGGATCCAGATTTAATTGAAGAAATGACAGATGCGTTCGCAGGACCACGGACAACTAAAGCTAAAGTAATCGATCTAAAGCTTGTCGCAGATTACATTAAAAGGAAATGGCCTGAGAGAAAATTGCCCGTTACGCCTCCACCTGAACCAATACGAAAGAAGAGCAAAAGGAAGGCGAAAAAGAAACATTGA

Protein

MSSEMLIREPPPTRMIFKAIDEQSSEEPPMEEWSSCQLEVNETNVKKALFQEGLYAPGSGEICTKYITVSDSSVLRHPYFNYPGVIDPGIEKALLQPEPPIIYPDDGQVLYLELCKEMGQCPVRMFHKGLLNDVIDLRYYGVNPNSVRCMGIAMKFNNFVKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRRLLPGLIVNRSLKVLNLNKNQLGDTGIQLVARGIVRGMDVENLYLSYNDLSANAANILTEAFNRHNKLVLLDLSWNNLYSPAEVYVLLTKLAQNEFLQTLDLSWNSLAGARIGNAIKILMKAPNLQNLNLSNNRLTGDAISNLLKNIEKPQNLVLNLSYNPMTPTDALSILNKLKLPEVKLNTLLLDNVLVGCEFLEALKEIRELEFRRDTIITHGGLTNGNKPTGPDPRDVVLNRADFLCLNPKKQPIDIALVLLKLLKTGNKIMSIKDFAKTLRRSGVPLDPDLIEEMTDAFAGPRTTKAKVIDLKLVADYIKRKWPERKLPVTPPPEPIRKKSKRKAKKKH

Description

Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation.

Similarity

Belongs to the Clp1 family. Clp1 subfamily.

Uniprot

H9JAV4   A0A0L7LTB1   A0A1C9EGH4   A0A0L7LSM5   A0A2H1WGQ1   A0A212F1N8   + More
A0A194QHL3   A0A194RNL2   A0A194QJ93   A0A194QND4   A0A2H1W1H8   A0A194RMP2   H9JB25   H9JN06   A0A212FAK7   A0A2H1WXC4   E2BHS2   A0A1B6ETI4   A0A0L7QMC8   A0A0M9A4E4   A0A195CMP5   A0A088AB53   A0A151XCR4   A0A151JC12   A0A2A3EPX5   A0A026W7F1   A0A151I302   A0A1Y1L9F8   A0A1B6KJN2   A0A195F9T4   N6SZA8   U4URG0   A0A232EGL8   F4WYU4   A0A139WEM6   A0A2B4SG47   H3B3F3   M3XJM7   A0A3N0YNI6   F1QNH6   U3J029   A0A210PQF7   A0A384AB95   A0A0L8GFQ3   A0A1W4ZLD1   A0A0L8GFJ2   A0A2U3VVE7   A0A1L8I070   C3Z2D7   A0A2Y9NQD9   A0A151MLE8   A0A1S3J7G8   A0A1S3K5K9   A0A060XL28   A0A2Y9DAP5   A0A3P8XQC9   A0A1L8F9C2   A0A2Y9JJR4   A0A341ASK2   A0A3B4TGU6   W5NW24   W5L4F3   L8IZK9   A0A226NXL8   A0A2U9CJ39   A0A3P9Q2E3   A0A2Y9ERU1   A0A1S3HY18   A0A087Y8N0   A0A384D334   A0A3Q7NYF7   H3BA37   M3YC36   A0A2I4CZ82   A0A2K6SSK3   W4XPE5   A0A2Y9GBX7   A0A2K5DXY4   A0A1U8CZ56   A0A3Q1ETB7   A0A3Q7Y8Z0   S9WSB8  

Pubmed

19121390    26227816    22118469    26354079    20798317    24508170    + More
28004739    23537049    28648823    21719571    18362917    19820115    9215903    23594743    23749191    28812685    27762356    18563158    22293439    24755649    25069045    20809919    25329095    22751099    24621616    23149746   

EMBL

BABH01008368    JTDY01000167    KOB78481.1    KX778609    AON96589.1    KOB78478.1    + More
ODYU01008523    SOQ52197.1    AGBW02010841    OWR47646.1    KQ458793    KPJ04997.1    KQ459984    KPJ19097.1    KPJ04995.1    KPJ04996.1    ODYU01005735    SOQ46887.1    KPJ19098.1    BABH01008501    BABH01041387    AGBW02009461    OWR50759.1    ODYU01011363    SOQ57064.1    GL448324    EFN84755.1    GECZ01028464    JAS41305.1    KQ414894    KOC59686.1    KQ435736    KOX77005.1    KQ977565    KYN01950.1    KQ982298    KYQ58153.1    KQ979120    KYN22568.1    KZ288194    PBC33815.1    KK107429    EZA50959.1    KQ976508    KYM82782.1    GEZM01066689    JAV67727.1    GEBQ01028314    JAT11663.1    KQ981727    KYN37193.1    APGK01051086    APGK01051087    KB741181    ENN73089.1    KB632333    ERL92741.1    NNAY01004742    OXU17483.1    GL888463    EGI60598.1    KQ971354    KYB26428.1    LSMT01000062    PFX29674.1    AFYH01003060    AFYH01003061    RJVU01035218    ROL47769.1    AL935141    ADON01035317    NEDP02005558    OWF38686.1    KQ422015    KOF75783.1    KOF75781.1    CM004466    OCU01757.1    GG666574    EEN53188.1    AKHW03005800    KYO25378.1    FR905523    CDQ79942.1    CM004480    OCT68176.1    AMGL01104598    AMGL01104599    AMGL01104600    JH880545    ELR60794.1    AWGT02000321    OXB72027.1    CP026259    AWP16605.1    AYCK01003420    AFYH01024312    AEYP01004660    AAGJ04080353    KB017008    EPY81332.1   

Proteomes

UP000005204    UP000037510    UP000007151    UP000053268    UP000053240    UP000008237    + More
UP000053825    UP000053105    UP000078542    UP000005203    UP000075809    UP000078492    UP000242457    UP000053097    UP000078540    UP000078541    UP000019118    UP000030742    UP000215335    UP000007755    UP000007266    UP000225706    UP000008672    UP000000437    UP000016666    UP000242188    UP000261681    UP000053454    UP000192224    UP000245340    UP000186698    UP000001554    UP000248483    UP000050525    UP000085678    UP000193380    UP000248480    UP000265140    UP000248482    UP000252040    UP000261420    UP000002356    UP000018467    UP000198419    UP000246464    UP000242638    UP000028760    UP000261680    UP000286641    UP000000715    UP000192220    UP000233220    UP000007110    UP000248481    UP000233020    UP000189705    UP000257200    UP000286642   

PRIDE

H9JAV4    H9JB25    H9JN06   

Pfam

PF13516   LRR_6        + More
PF00560   LRR_1
PF16575   CLP1_P
PF06807   Clp1
PF16573   CLP1_N
PF00249   Myb_DNA-binding
PF04433   SWIRM
PF13499   EF-hand_7
PF13833   EF-hand_8
PF02191   OLF

Interpro

IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt       
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR032324   Clp1_N       
IPR027417   P-loop_NTPase       
IPR038238   Clp1_C_sf       
IPR038239   Clp1_N_sf       
IPR032319   CLP1_P       
IPR010655   Clp1_C       
IPR028606   Clp1       
IPR007526   SWIRM       
IPR018247   EF_Hand_1_Ca_BS       
IPR001005   SANT/Myb       
IPR009057   Homeobox-like_sf       
IPR017884   SANT_dom       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR003112   Olfac-like_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF46689   SSF46689       
SSF47473   SSF47473       

Gene 3D

3.80.10.10     2.60.120.1030     3.30.70.2410    

CDD

cd00167  SANT
cd00051  EFh

ProteinModelPortal

H9JAV4   A0A0L7LTB1   A0A1C9EGH4   A0A0L7LSM5   A0A2H1WGQ1   A0A212F1N8   + More
A0A194QHL3   A0A194RNL2   A0A194QJ93   A0A194QND4   A0A2H1W1H8   A0A194RMP2   H9JB25   H9JN06   A0A212FAK7   A0A2H1WXC4   E2BHS2   A0A1B6ETI4   A0A0L7QMC8   A0A0M9A4E4   A0A195CMP5   A0A088AB53   A0A151XCR4   A0A151JC12   A0A2A3EPX5   A0A026W7F1   A0A151I302   A0A1Y1L9F8   A0A1B6KJN2   A0A195F9T4   N6SZA8   U4URG0   A0A232EGL8   F4WYU4   A0A139WEM6   A0A2B4SG47   H3B3F3   M3XJM7   A0A3N0YNI6   F1QNH6   U3J029   A0A210PQF7   A0A384AB95   A0A0L8GFQ3   A0A1W4ZLD1   A0A0L8GFJ2   A0A2U3VVE7   A0A1L8I070   C3Z2D7   A0A2Y9NQD9   A0A151MLE8   A0A1S3J7G8   A0A1S3K5K9   A0A060XL28   A0A2Y9DAP5   A0A3P8XQC9   A0A1L8F9C2   A0A2Y9JJR4   A0A341ASK2   A0A3B4TGU6   W5NW24   W5L4F3   L8IZK9   A0A226NXL8   A0A2U9CJ39   A0A3P9Q2E3   A0A2Y9ERU1   A0A1S3HY18   A0A087Y8N0   A0A384D334   A0A3Q7NYF7   H3BA37   M3YC36   A0A2I4CZ82   A0A2K6SSK3   W4XPE5   A0A2Y9GBX7   A0A2K5DXY4   A0A1U8CZ56   A0A3Q1ETB7   A0A3Q7Y8Z0   S9WSB8  

PDB

5IRL     E-value=2.83861e-08,     Score=141

KEGG

101739042    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 74B-like

GO

GO:0005849   GO:0006378   GO:0005634   GO:0006388   GO:0005524   GO:0003677   GO:0005509   GO:0005515   GO:0016592   GO:0015074   GO:0050660   GO:0016627   GO:0006635   GO:0003995   GO:0008152   GO:0016491   GO:0003824  

Subcellular location

Nucleus  

Length:

548

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00794

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00188

outside

1  -  548

 

 

Pi

132.751473

Theta

154.729598

Tajima's D

-0.455407

CLR

0.487768

CSRT

0.250087495625219

Interpretation

Uncertain