Gene

KWMTBOMO05426  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006653

Annotation

PREDICTED:_39S_ribosomal_protein_L50?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr10(-):1803554-1805575      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.081

CDS

ATGCTCAGAAATGTATTATCACCCTTACGTCGTGGAAGTTTCCAGGTCACATCTATCAGACAAGCTCAAAAAAAATATCCCAAAGTAGATAAAAAGGTTCAAGCAGCGGCAGAATCCTTAGCGGCAAGAGGCTTCCTACGTCCCACCAAGTCATGGGATCCACCTACAAACATCAATGAAACAATTCTGAAAATATGTGCAACATGTGGATTAAATGGAAATTCAGAATTTGAAGCATTGGACACAAAATTTACAGTTCTCAAAGCTTGTTATGAAGAAACAGGCCATAGTGTGCCTAATTCACTTTTGCATACAATTGAAACAGTTGATGACCTAACAGAATTTTACAAAACACCTGTGTACACAACTACACCGTTTGATGCTCTGAAGTTAATGGATCTACCCAAAAATCTACATGTTCAAAAAGATTATGTTAGATTTCATCCAGATACGGACACTTTATTCAATGGCGTCTCCGCTTTTCCGAAGAGTTCGACTATTGTAACCGGCCTTAAAGCACGGAAGAAGTATGAAGGCTACAATGCTAAAAGGAAATGGCCTTGA

Protein

MLRNVLSPLRRGSFQVTSIRQAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPTNINETILKICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDALKLMDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSSTIVTGLKARKKYEGYNAKRKWP

Uniprot

H9JAV8   A0A1E1WIF3   A0A2A4ITU9   A0A194RSQ6   A0A1C9EGH5   A0A2H1WGX9   + More
A0A194QJ82   A0A212FFI3   A0A0L7LU49   A0A195F1C6   A0A158NFW3   A0A1A9ZMR6   A0A0L0CNR5   A0A1B0G6B8   A0A0M5J0W1   A0A0J7NX49   A0A1A9XTV2   A0A182VJA9   A0A182HM34   A0A182LJX1   A0A1A9UVU1   Q7Q760   A0A182V3N1   A0A151XC36   B4N3Q8   A0A182WQL9   Q9V3E3   A0A3B0J3J1   A0A034WGB2   B4HV34   A0A182MAR8   B3M4Y7   Q2M0G3   B4GRN5   B4QKB0   A0A0J9RRV2   A0A1L8EGQ1   U5ENH7   A0A3L8DLV2   A0A182IM66   A0A026WQT2   B4PK44   A0A1L8EH25   A0A023EKE2   A0A195E6R1   Q16IT0   W5JPY1   A0A2M3Z8P9   A0A2M3Z855   A0A1B0DDT5   A0A084W2X2   Q16I54   A0A0K8UUS4   A0A182Y0W2   A0A182T373   A0A1L8E0B4   A0A2M4BYQ9   A0A2M4BZV1   A0A2M4ARN5   A0A1Y1MDP8   A0A182LJL8   E2BDC1   A0A1W4UUR2   B3NFG5   T1DQN0   A0A2J7RJ36   A0A2M4ARM6   A0A2M4ARQ8   A0A336K691   A0A195CHC5   A0A2M4BYS4   A0A1A9W5R8   A0A1Q3F9P3   A0A2M4C0A4   B0WMS5   A0A1B0BBS8   A0A0K8TX66   E1ZYY3   B4LI70   B4KVR9   A0A0K8TQ72   A0A1W4W4B3   A0A1I8NXB2   A0A195B2M7   B4IY74   A0A2P8XYE1   A0A182KA93   A0A182PN78   A0A1I8N2J6   A0A1L8E1C9   E9J666   A0A182NM80   A0A0L7QJY9   A0A1B6BYY2   A0A067RTH4   A0A1B6M4T3   J9K2S1   A0A0P4VNV2   V9IFC4   T1I7I6  

Pubmed

19121390    26354079    22118469    26227816    21347285    26108605    + More
20966253    12364791    14747013    17210077    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    15632085    22936249    30249741    24508170    17550304    24945155    17510324    20920257    23761445    24438588    25244985    28004739    20798317    26369729    29403074    25315136    21282665    24845553    27129103   

EMBL

BABH01008349    GDQN01004280    JAT86774.1    NWSH01008413    PCG62563.1    KQ459984    + More
KPJ19106.1    KX778609    AON96594.1    ODYU01008595    SOQ52321.1    KQ458793    KPJ04985.1    AGBW02008811    OWR52505.1    JTDY01000085    KOB78972.1    KQ981864    KYN34268.1    ADTU01014817    ADTU01014818    JRES01000234    KNC33094.1    CCAG010000599    CP012525    ALC44498.1    LBMM01001065    KMQ96990.1    APCN01004335    AAAB01008960    EAA11140.2    KQ982314    KYQ57924.1    CH964095    EDW79263.1    AF199369    AE014296    AY094750    AY113387    AAF09579.1    AAF50594.1    AAM11103.1    AAM29392.1    OUUW01000002    SPP76224.1    GAKP01004331    JAC54621.1    CH480817    EDW50805.1    AXCM01000793    CH902618    EDV40561.1    CH379069    EAL30969.1    CH479188    EDW40420.1    CM000363    EDX09533.1    CM002912    KMY98039.1    GFDG01000889    JAV17910.1    GANO01004079    JAB55792.1    QOIP01000006    RLU21410.1    KK107135    EZA58026.1    CM000159    EDW93724.1    GFDG01000890    JAV17909.1    GAPW01003988    JAC09610.1    KQ979568    KYN20868.1    CH478054    EAT34183.1    ADMH02000446    ETN66447.1    GGFM01004109    MBW24860.1    GGFM01003962    MBW24713.1    AJVK01014619    ATLV01019715    KE525278    KFB44566.1    CH478107    EAT33937.1    GDHF01021892    JAI30422.1    GFDF01001965    JAV12119.1    GGFJ01009084    MBW58225.1    GGFJ01009432    MBW58573.1    GGFK01010112    MBW43433.1    GEZM01034209    JAV83864.1    GL447585    EFN86349.1    CH954178    EDV50507.1    GAMD01002369    JAA99221.1    NEVH01003007    PNF40849.1    GGFK01010110    MBW43431.1    GGFK01010133    MBW43454.1    UFQS01000063    UFQT01000063    SSW98865.1    SSX19251.1    KQ977754    KYN00108.1    GGFJ01009085    MBW58226.1    GFDL01010755    JAV24290.1    GGFJ01009430    MBW58571.1    DS232001    EDS31173.1    JXJN01011623    GDHF01033240    JAI19074.1    GL435242    EFN73673.1    CH940647    EDW69637.2    CH933809    EDW18443.1    GDAI01001563    JAI16040.1    KQ976662    KYM78535.1    CH916366    EDV96524.1    PYGN01001169    PSN37013.1    GFDF01001712    JAV12372.1    GL768221    EFZ11684.1    KQ415041    KOC58909.1    GEDC01031034    JAS06264.1    KK852473    KDR23114.1    GEBQ01009050    JAT30927.1    ABLF02041084    GDKW01003170    JAI53425.1    JR041131    AEY59367.1    ACPB03005589   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000078541    UP000005205    UP000092445    UP000037069    UP000092444    UP000092553    UP000036403    UP000092443    UP000075903    UP000075840    UP000075882    UP000078200    UP000007062    UP000075809    UP000007798    UP000075920    UP000000803    UP000268350    UP000001292    UP000075883    UP000007801    UP000001819    UP000008744    UP000000304    UP000279307    UP000075880    UP000053097    UP000002282    UP000078492    UP000008820    UP000000673    UP000092462    UP000030765    UP000076408    UP000075901    UP000008237    UP000192221    UP000008711    UP000235965    UP000078542    UP000091820    UP000002320    UP000092460    UP000000311    UP000008792    UP000009192    UP000192223    UP000095300    UP000078540    UP000001070    UP000245037    UP000075881    UP000075885    UP000095301    UP000075884    UP000053825    UP000027135    UP000007819    UP000015103   

PRIDE

H9JAV8    Q9V3E3   

Pfam

PF10501   Ribosomal_L50        + More
PF03564   DUF1759
PF10351   Apt1
PF10347   Fmp27_GFWDK
PF00096   zf-C2H2
PF07776   zf-AD

Interpro

IPR018305   Ribosomal_L50_mt        + More
IPR019443   FMP27_C       
IPR005312   DUF1759       
IPR019441   FMP27_GFWDK_dom       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR039970   TF_Grauzone       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JAV8   A0A1E1WIF3   A0A2A4ITU9   A0A194RSQ6   A0A1C9EGH5   A0A2H1WGX9   + More
A0A194QJ82   A0A212FFI3   A0A0L7LU49   A0A195F1C6   A0A158NFW3   A0A1A9ZMR6   A0A0L0CNR5   A0A1B0G6B8   A0A0M5J0W1   A0A0J7NX49   A0A1A9XTV2   A0A182VJA9   A0A182HM34   A0A182LJX1   A0A1A9UVU1   Q7Q760   A0A182V3N1   A0A151XC36   B4N3Q8   A0A182WQL9   Q9V3E3   A0A3B0J3J1   A0A034WGB2   B4HV34   A0A182MAR8   B3M4Y7   Q2M0G3   B4GRN5   B4QKB0   A0A0J9RRV2   A0A1L8EGQ1   U5ENH7   A0A3L8DLV2   A0A182IM66   A0A026WQT2   B4PK44   A0A1L8EH25   A0A023EKE2   A0A195E6R1   Q16IT0   W5JPY1   A0A2M3Z8P9   A0A2M3Z855   A0A1B0DDT5   A0A084W2X2   Q16I54   A0A0K8UUS4   A0A182Y0W2   A0A182T373   A0A1L8E0B4   A0A2M4BYQ9   A0A2M4BZV1   A0A2M4ARN5   A0A1Y1MDP8   A0A182LJL8   E2BDC1   A0A1W4UUR2   B3NFG5   T1DQN0   A0A2J7RJ36   A0A2M4ARM6   A0A2M4ARQ8   A0A336K691   A0A195CHC5   A0A2M4BYS4   A0A1A9W5R8   A0A1Q3F9P3   A0A2M4C0A4   B0WMS5   A0A1B0BBS8   A0A0K8TX66   E1ZYY3   B4LI70   B4KVR9   A0A0K8TQ72   A0A1W4W4B3   A0A1I8NXB2   A0A195B2M7   B4IY74   A0A2P8XYE1   A0A182KA93   A0A182PN78   A0A1I8N2J6   A0A1L8E1C9   E9J666   A0A182NM80   A0A0L7QJY9   A0A1B6BYY2   A0A067RTH4   A0A1B6M4T3   J9K2S1   A0A0P4VNV2   V9IFC4   T1I7I6  

PDB

6NU2     E-value=1.47537e-06,     Score=120

KEGG

101738671    K17431 large subunit ribosomal protein L50 | (RefSeq) 39S ribosomal protein L50, mitochondrial

GO

GO:0005739   GO:0005840   GO:0032543   GO:0005762   GO:0003735   GO:0016021   GO:0003700   GO:0008270   GO:0003676   GO:0005634   GO:0008305   GO:0015074   GO:0050660   GO:0016627   GO:0006635   GO:0003995   GO:0008152   GO:0016491   GO:0003824  

PANTHER

PTHR23225  

Length:

187

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00636

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05593

outside

1  -  187

 

 

Pi

221.833893

Theta

189.987913

Tajima's D

0.340457

CLR

0.037125

CSRT

0.468476576171191

Interpretation

Uncertain