Silkworm Genome Informatics Database

Gene

KWMTBOMO05421 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006655

Annotation

PREDICTED:_integrin_alpha-PS2_[Bombyx_mori]

Location

Bomo_Chr10(-):1633297-1720390 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.523 Nuclear Reliability : 1.772

CDS

ATGCCGAAAATACCGGACGAAGGTCAGCTGATGTCACAGACGCTATACGCCCGGCCGGCCCTTATAGCTACGCTAGAGTCAAGTCCTAGGTACGACGACTCTTACATGGGATACTCTATAACCGTTGGTGATTTTGCTGGACAAGGCATTCAGAGTGTTGCTGTGGGTATGCCTAGAGGTGCTGACTTGAGGGGTTTGGTGGTACTCTACACTTGGGAGCTCCAGAACATCAAGAATATATCCGGCTCTCAGATCGGAGCATACTTCGGTTACAGTCTCGCTTCTGGTGACATTGACGGTGATGGAACCGATGACGTCATAGTAGGAGCTCCAATGTTCACCAAGCCGAGAAGCGACGGATACGAACACGGAAGAATCTATGTTATTTACCAGGGAACTGACAGGTCGTTCTCAAGAAGTCACGCAAGGACCGGCGAGGTCTCCCAGGGCAGGTTCGGGTTGGCGGTAACGTCACTCGGTGACATCAACTATGACGGATTCGGCGATATCGCGGTGGGAGCTCCATACGGCGGAGAGAAAGGCCGGGGCGTGGTCTACATCTACCACGGAAGCGAAGTCGGCATATTGGAGAAGTACTCGCAGGCCATCACCGCGGAGGAGATCTCGCCGACCTTGAGCACGTTCGGCTTCTCGCTGTCCGGCGGAGTGGACCTCGACAACAACAACTACACCGATTTGGCAGTCGGAGCCTATAAGTCCAACAGTGTTGTGTTTTTAAAGTCTCGTCCCGTCGTCAAGGTGAGTGCCGAAGTGAAGTTCATGGGCGAGAGCAAGCTCATCTCGCTCACGGACAAGAAGTGCCATCTCAGTAACGGCACGGAGGTCGCGTGCGCCCAGGTCATGTTCTGTCTCACCTACACCGGGGTCAACGTGGACCAGCAGATAAATTTCGAGGTGACTTTAGACCTGGATTCGCGTCAGACGACCAGCAAGCGACTGTTCTTAGCTGAAACCAGAGAGACGACATACAAGACCCACATCATGCTGACGCAGGGACTGCAGGAGTGCAAAGATGTCGTTGTCTACTTAGATGAGGAGATCCGCGACAAGCTGACGCCCATAGAGGTGAAGCTGTCGTACGAGCTGGTGCCGCAGCCGTCGGGCGCCGCCGTCCCGCCCGTGCTGGACCGCACGCGCGCCGCCGCGCACTCCGACGCGCTCCACATACAGAAGAACTGCGGACCCGACAACATCTGCATCCCCGACCTCAGGATGTCCGCCGCCACCCCGATCGTGAACTACGTTCTCGGCTCCGGAGAAAACTTGAACATCGATGTGAAAGTGGAGAACTCCGGCGAGGACGCCTTCGAAGCTGCCTACTACCTGCTGATTCCTGCCGGAGTTACATACGCGAAGACCGAACGTTTAGACAAGGACAATATAGTGACTCCTATATACTGTTCTATAGAGAAGAGGGAATCCGACGGGAACTCTACTTTGAAGTGTGATATAGGCAACCCCATGGCCAGTGGACAGAAGGTGAACTTCCGCGTGATCCTCGAAGTGGACGCGCTCGTGACGTCACTGAACTTCTACATGGAAGCGAACTCCACCAACCCCGAGCAAGGAACCGATTACGACAACGTCATGAACATGAACATCGGCGTCATCATCAGAGCACAGCTCTCTGTCATCGGGACCTCAGACCCGCCCGAGCTCCATTACAACGCGTCGGTATACGAAGCGACCGACCTGAAGGACGACACCAAGCTGGGCCCCCCCGTGATCCACAAGTACAGCATCAAGAACGAGGGGCCCTTCACCGTAGACGAAGCCGAGATGTACTTCATGTGGCCCTATCAGACTCTTGAAGGCGAAAACCTGATGTACATGCTGGTGCAGCCGCAGTGGCTCGGGAACATCAAGTGCAACGTGGCGCGACACATCAACACAGAGAACCTCTTCGTCCAGAATCCCTACATGCCTCTGCTCGAAAAGGAAAGAGAAGCAATGGCGAGCACCAACATGTACACTGAAGCACAGCTCGTCGGTGGCTTCGGATATTACGGGCAGACGCAATGGGAGCAGCATTCCACCAGCGGCGGTACAGTGACGTCACAATCTGGAGGTTTCGTGTCAGGTGGACAACAGGGATCGTCCACCCAAACTGGCCCCGCCAATTCCGGTGGTCAGCTTAGTAGCGGTCAAACTGCTGGTGGTCAGTTCACTCACACTTCTGGAGGTCAATACAGCGGAGGTCAAACTGCTGGTGGGCAGTTTAGTCAATCTTCCGGAGGTCCATACGGTGGAGATCACAGTGCTGGTGGGCAGTTTAGTCAAACTTCCGGAGGTCAGTATAGTGGAGGTCAAGAACAGCAATCTGGACAACATCAGTTCAGTCAGGGAGGACAGAACGGCGGAACTACTTATACATACAAGTGGACGAATGGACAAGGTCTGACTGTTGAAGAACAGGAGAAAATCAAGAAAAGTCTTGAAGCCTTCGCACAAGGAAACGGGCAGGGCGGTTTCACCCAGGGTGGCTTCACTCAAGGAGCCGACGGACAGATCTATGTCGATGGAGGAAGAGTCGTTCGCATTAGGAATATAACGACAGTTTACGACGCAAATAACAACACCATATTCCAGACTGAGACTAGCACGGAATACGGAAAACTTGGGCATGAAGGTGAAGCTGGAAGTTCATTTAATACATACGTTAATAACCAAGGAGGACAGCAACACAGCGGCTCGTTCGCTCACGGCTCTGGTGGTTACGTCCAAGGTTCGGGCCAAACTCAGACCCAAGGTGGACAAAATTGGCAAGGCTCTGTTCAAGGAAATAGTCAGTTCTCTCAAGGCTCAGGATCTGGACAAGGCTTTGTCCATGGATCCTGGGGAACCACAGAGACAGTTAACCCTGACCTTGTGAAAGCCGGGTCGTCGACTTTCAGAGGAGCCTCAACAGTCACTGTAGTGGGTGACGAAGAAGACAACGAAGGACTTGGTTTTGGAGCTTTCGCTGCTTCTAACCCTAACAATGAGTTCAAATACGCGATCGGTGACGTAACCAACGCCGGCAGCGGACAAGCTGGAAGTCGCACCGGCACTGCTGGTGGTAGTTACCAATCTGGCGGGGCTTATCAAGCTGGAGGAGCCGGGCATCAAGCTGGAGGAGGTGCTTATCTGTCTGGTGGAGGCAGTTACCGAACTGGAGGTTCTGCTTATCAGTCTGGGGGGAGCGCACAGGATGGAAGCCGATCGTGGAGCAGTGGATATTCTTATTCTTCTCAATCAGGAGGTGGCTCTTCATACAACAGCCATTCTGGAAATTATGGCTCCACTAGTAGCCGAGAAAACACCAGGAGAAGGAGACAGGTCGATCAGTCACAAGTTGACAAGCAACTCAAGGACATCTTAACCAACTGTCAGGAGAAATACAAATGTGAAGTGATGAGGTGCACCACGGGCAGGCTGCTGAAGGGCCAGGAGGTGTGGGTGGCGCTGCGGTCCAGGATCAACGCAACTGTACTTAACGAGATCTCGAAGGAGCGGCCGATAGTGCTGTCGTCGCTGTGCGCGGCGCGCGTGTCGCGGCTGGGCGGCGGCGCGGCGGGCGGCGCGGGGGCGGGCTGGGCGCGGGGGGAGGCGCGCACGTCGCTGAGCCCGCAGCTGGGCGCGCGCGGGGGCGGCGTGCCGCTGTGGGTCATCATCCTCGCCGCCATCATCGGGGCGCTGCTGCTGCTCCTGCTCATCTTCGCGCTCTACAAATGCGGATTCTTCAAGCGCAACCGTCCCTCCGACCACACCGAGCGCCAGCCGCTGAACGGACGTGACGAACACCTTTGA

Protein

MPKIPDEGQLMSQTLYARPALIATLESSPRYDDSYMGYSITVGDFAGQGIQSVAVGMPRGADLRGLVVLYTWELQNIKNISGSQIGAYFGYSLASGDIDGDGTDDVIVGAPMFTKPRSDGYEHGRIYVIYQGTDRSFSRSHARTGEVSQGRFGLAVTSLGDINYDGFGDIAVGAPYGGEKGRGVVYIYHGSEVGILEKYSQAITAEEISPTLSTFGFSLSGGVDLDNNNYTDLAVGAYKSNSVVFLKSRPVVKVSAEVKFMGESKLISLTDKKCHLSNGTEVACAQVMFCLTYTGVNVDQQINFEVTLDLDSRQTTSKRLFLAETRETTYKTHIMLTQGLQECKDVVVYLDEEIRDKLTPIEVKLSYELVPQPSGAAVPPVLDRTRAAAHSDALHIQKNCGPDNICIPDLRMSAATPIVNYVLGSGENLNIDVKVENSGEDAFEAAYYLLIPAGVTYAKTERLDKDNIVTPIYCSIEKRESDGNSTLKCDIGNPMASGQKVNFRVILEVDALVTSLNFYMEANSTNPEQGTDYDNVMNMNIGVIIRAQLSVIGTSDPPELHYNASVYEATDLKDDTKLGPPVIHKYSIKNEGPFTVDEAEMYFMWPYQTLEGENLMYMLVQPQWLGNIKCNVARHINTENLFVQNPYMPLLEKEREAMASTNMYTEAQLVGGFGYYGQTQWEQHSTSGGTVTSQSGGFVSGGQQGSSTQTGPANSGGQLSSGQTAGGQFTHTSGGQYSGGQTAGGQFSQSSGGPYGGDHSAGGQFSQTSGGQYSGGQEQQSGQHQFSQGGQNGGTTYTYKWTNGQGLTVEEQEKIKKSLEAFAQGNGQGGFTQGGFTQGADGQIYVDGGRVVRIRNITTVYDANNNTIFQTETSTEYGKLGHEGEAGSSFNTYVNNQGGQQHSGSFAHGSGGYVQGSGQTQTQGGQNWQGSVQGNSQFSQGSGSGQGFVHGSWGTTETVNPDLVKAGSSTFRGASTVTVVGDEEDNEGLGFGAFAASNPNNEFKYAIGDVTNAGSGQAGSRTGTAGGSYQSGGAYQAGGAGHQAGGGAYLSGGGSYRTGGSAYQSGGSAQDGSRSWSSGYSYSSQSGGGSSYNSHSGNYGSTSSRENTRRRRQVDQSQVDKQLKDILTNCQEKYKCEVMRCTTGRLLKGQEVWVALRSRINATVLNEISKERPIVLSSLCAARVSRLGGGAAGGAGAGWARGEARTSLSPQLGARGGGVPLWVIILAAIIGALLLLLLIFALYKCGFFKRNRPSDHTERQPLNGRDEHL

Subunit

Heterodimer of an alpha and a beta subunit.

Similarity

Belongs to the integrin alpha chain family.

Uniprot

H9JAW0

Pubmed

19121390

EMBL

BABH01008337

Proteomes

UP000005204

PRIDE

H9JAW0

Pfam

PF08441 Integrin_alpha2 + More
PF01839 FG-GAP

Interpro

IPR028994   Integrin_alpha_N        + More
IPR000413   Integrin_alpha
IPR013517   FG-GAP
IPR013519   Int_alpha_beta-p
IPR013649   Integrin_alpha-2
IPR032695   Integrin_dom_sf

SUPFAM

SSF69179 SSF69179

Gene 3D

2.130.10.130

ProteinModelPortal

H9JAW0

PDB

6AVU E-value=4.02268e-77, Score=738

KEGG

101746917 no KO assigned | (RefSeq) integrin alpha-PS2

GO

GO:0008305 GO:0007155 GO:0007229 GO:0015074 GO:0050660 GO:0016627 GO:0006635 GO:0003995 GO:0008152 GO:0016491 GO:0003824

Subcellular location

Membrane

Length:

1269

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.91827

Exp number, first 60 AAs:

0.00706

Total prob of N-in:

0.00036

outside

1 - 1220

TMhelix

1221 - 1243

inside

1244 - 1269

Pi

227.465163

Theta

180.993677

Tajima's D

0.700632

CLR

0.535834

CSRT

0.575471226438678

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
31250652	QIQELIEAVVLPMTHK	100.00	2e-08
26822097	FVSFVSAK	100.00	4e-04
26280517	YAFTAPTR	100.00	4e-04
28467696	YAIFIDDETDPIDAIK	100.00	4e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics