Gene

KWMTBOMO05417

Pre Gene Modal

BGIBMGA006657

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_glutamate_receptor_ionotropic?_delta-2_[Bombyx_mori]

Location

Bomo_Chr10(-):1543356-1545210      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.095

CDS

ATGTTGCTCGTCGTGTCATTACCGAAACTGCCAACAGGCTGGTCTATTCGATTCCTGACTGGCTGGTATTGGTTGTACTGTATATTACTGGTGGTTTCGTACCGAGCAAGCATGACCGCTATCCTGGCTAACCCAGCGCCAAGAGTGACGATCGACACGTTAGTCGAATTGGCCGCCAGTAAACTTACTTGTGGAGGTTGGGGAATCGAAACTAAGAATTTTTTTCAAGATTCCTTGGATGAAATTGGTCAAAAAATTTCTGACAGATTCGAAATTAGTAACGACCCTAATATTGCGGCTGATAAAGTCGCTCAGGGTACATTTGCGTATTATGACAATAAAAACTTCCTAAAATACATCACCGTTAGAAGACAAAATGGTTTTATTATGGAAACTATTGATAACACAACTAATTTTACCAGCATTAGCACTAAAAGCAACAATGAGAGAAATCTCCATATCATGTCTGATTGCGTTGTGAACATACCTATCTCAATTGGATTTCACAAGAATTCTCCACTTAAGCCCTTAACTGATATATACATCACGAGAATAGTTGAGGTTGGTTTGGTTGAAAAGTGGCTGAATGATGCCATGTACACAATCAAAACTTTAGAAACAAACGAGGAGGAGATCAAAGCTTTAATGAACTTGAAGAAGCTTTATGGAGCCTTCATCGCATTAGCCATCGGCTACTTCTTGAGCGTGATGTGCCTAATTGGAGAGCTGGCCCACTGGAATTGTGTTGTGAAGAAAGACCCAAACTATGACAAATATGCTTTACACAAATATTATGAGAAAATAAACAAAAAGCAGTAG

Protein

MLLVVSLPKLPTGWSIRFLTGWYWLYCILLVVSYRASMTAILANPAPRVTIDTLVELAASKLTCGGWGIETKNFFQDSLDEIGQKISDRFEISNDPNIAADKVAQGTFAYYDNKNFLKYITVRRQNGFIMETIDNTTNFTSISTKSNNERNLHIMSDCVVNIPISIGFHKNSPLKPLTDIYITRIVEVGLVEKWLNDAMYTIKTLETNEEEIKALMNLKKLYGAFIALAIGYFLSVMCLIGELAHWNCVVKKDPNYDKYALHKYYEKINKKQ

Uniprot

H9JAW2   A0A075TD94   A0A0K8TVJ6   A0A2A4J5W4   A0A386H8Z8   A0A0L7L303   + More
A0A345BF47   A0A1B3B704   A0A0F7QK03   A0A1B3P5I4   A0A2H1VUJ7   E5FIA7   A0A2K8GKZ5   A0A2K8GL85   A0A1Y9TJT5   A0A194QNB4   A0A194RMR1   A0A140G9I2   A0A3S2LVR8   A0A1C9EGI0   A0A212EVL8   A0A2P8XM32   A0A0U5ARX4   A0A067RDK9   D6X0V7   J9KAI3   A0A1B6IQG3   A0A310SCX2   A0A1W4XI02   T1H8I6   E0VMW0   A0A2R7VZ94   A0A026X2P0   A0A3L8DNP4   A0A195F448   A0A0A9WWV2   A0A0M8ZUV9   A0A310S941   F4W4Y1   A0A151XEJ6   A0A151JLH6   A0A2A3EKI7   A0A087ZVT3   A0A195CF85   A0A195BNX6   A0A0L7QJU4   A0A154PSX2   Q17BA7   A0A336MB17   E2A0W6   A0A3L9LSY2   A0A1S4F9D5   A0A1W6L170   A0A182H107   B0W521   A0A182W7U8   A0A182MDX7   A0A232FKC0   A0A182Q3D6   A0A1J1ITH8   A0A182YGS4   K7IQ73   A0A182RVK5   A0A0M4EII4   A0A1A9VXX5   A0A0L0C9S2   A0A1S4GWS3   Q7Q3M6   A0A1W4W5W6   A0A1I8NEI8   A0A0J9RTM5   B4MKM1   A0A1A9XRY2   A0A1B0BS36   B3M3Y7   A0A1B0FPF1   B4L1C0   A0A0J9RTA8   A0A3Q0IMF8   A0A1I8PRW8   B3NGT8   A0A1A9ZKB3   B4PF26   Q9VTH3   B4J2L4   A0A3B0JWG1   X2JCB2   B4QPS2   Q2LZ47   B4GZM0   A0A1A9WUV8   A0A2K6VB67   A0A182F4J2   B4HEC2   A0A084VNZ9   A0A1B0EYB4   B4LCM8   A0A0J7KKB3  

Pubmed

19121390    25027790    26017144    26227816    29727827    25803580    + More
27538507    21091811    28736530    29375398    26354079    27004525    22118469    29403074    26760975    24845553    18362917    19820115    20566863    24508170    30249741    25401762    21719571    17510324    20798317    26483478    28648823    25244985    20075255    26108605    12364791    25315136    22936249    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    20920257    24438588   

EMBL

BABH01008325    BABH01008326    BABH01008327    KF768727    AIG51921.1    GCVX01000135    + More
JAI18095.1    NWSH01003171    PCG66830.1    MG546654    AYD42277.1    JTDY01003244    KOB69888.1    MG820700    AXF48871.1    KT588080    AOE47990.1    LC017788    BAR64802.1    KX655904    AOG12853.1    ODYU01004533    SOQ44519.1    HM562971    ADR64682.1    KX585405    ARO70298.1    KY225536    ARO70548.1    KX084511    ARO76466.1    KQ458793    KPJ04976.1    KQ459984    KPJ19118.1    KU702634    AMM70661.1    RSAL01000162    RVE45396.1    KX778609    AON96599.1    AGBW02012180    OWR45511.1    PYGN01001739    PSN33061.1    FX982937    BAU20263.1    KK852704    KDR18055.1    KQ971372    EFA10559.2    ABLF02025841    GECU01030838    GECU01018545    JAS76868.1    JAS89161.1    GGOB01000056    MCH29452.1    ACPB03022988    ACPB03022989    DS235327    EEB14716.1    KK854187    PTY12807.1    KK107020    EZA62565.1    QOIP01000006    RLU21499.1    KQ981820    KYN35238.1    GBHO01031390    JAG12214.1    KQ435833    KOX71615.1    KQ763450    OAD55050.1    GL887596    EGI70677.1    KQ982254    KYQ58688.1    KQ979002    KYN26674.1    KZ288219    PBC32228.1    KQ977827    KYM99452.1    KQ976424    KYM88215.1    KQ415041    KOC58902.1    KQ435048    KZC14210.1    CH477324    EAT43539.1    UFQT01000650    SSX26109.1    GL435626    EFN73019.1    KB466333    RLZ02244.1    KX609448    ARN17855.1    JXUM01102368    KQ564722    KXJ71842.1    DS231840    EDS34587.1    AXCM01001403    NNAY01000077    OXU31196.1    AXCN02002267    CVRI01000057    CRL02414.1    CP012525    ALC43688.1    JRES01000714    KNC29001.1    AAAB01008964    EAA12883.4    CM002912    KMY98967.1    CH963847    EDW72727.2    JXJN01019455    CH902618    EDV39321.2    CCAG010008760    CH933809    EDW19302.1    KMY98968.1    CH954178    EDV51395.2    CM000159    EDW94108.1    AE014296    AAF50075.2    CH916366    EDV97099.1    OUUW01000002    SPP77051.1    AHN58056.1    CM000363    EDX10063.1    CH379069    EAL29662.2    CH479199    EDW29447.1    CH480815    EDW41076.1    ATLV01014965    KE524999    KFB39693.1    AJVK01007783    CH940647    EDW70920.1    LBMM01006286    KMQ90732.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000053240    UP000283053    + More
UP000007151    UP000245037    UP000027135    UP000007266    UP000007819    UP000192223    UP000015103    UP000009046    UP000053097    UP000279307    UP000078541    UP000053105    UP000007755    UP000075809    UP000078492    UP000242457    UP000005203    UP000078542    UP000078540    UP000053825    UP000076502    UP000008820    UP000000311    UP000069940    UP000249989    UP000002320    UP000075920    UP000075883    UP000215335    UP000075886    UP000183832    UP000076408    UP000002358    UP000075900    UP000092553    UP000078200    UP000037069    UP000007062    UP000192221    UP000095301    UP000007798    UP000092443    UP000092460    UP000007801    UP000092444    UP000009192    UP000079169    UP000095300    UP000008711    UP000092445    UP000002282    UP000000803    UP000001070    UP000268350    UP000000304    UP000001819    UP000008744    UP000091820    UP000069272    UP000001292    UP000030765    UP000092462    UP000008792    UP000036403   

PRIDE

H9JAW2    Q9VTH3    X2JCB2   

Pfam

PF10613   Lig_chan-Glu_bd        + More
PF00060   Lig_chan
PF01756   ACOX
PF02770   Acyl-CoA_dh_M

Interpro

IPR019594   Glu/Gly-bd        + More
IPR001320   Iontro_rcpt       
IPR036250   AcylCo_DH-like_C       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR002655   Acyl-CoA_oxidase_C       
IPR001508   Iono_rcpt_met       

SUPFAM

SSF56645   SSF56645        + More
SSF47203   SSF47203       

ProteinModelPortal

H9JAW2   A0A075TD94   A0A0K8TVJ6   A0A2A4J5W4   A0A386H8Z8   A0A0L7L303   + More
A0A345BF47   A0A1B3B704   A0A0F7QK03   A0A1B3P5I4   A0A2H1VUJ7   E5FIA7   A0A2K8GKZ5   A0A2K8GL85   A0A1Y9TJT5   A0A194QNB4   A0A194RMR1   A0A140G9I2   A0A3S2LVR8   A0A1C9EGI0   A0A212EVL8   A0A2P8XM32   A0A0U5ARX4   A0A067RDK9   D6X0V7   J9KAI3   A0A1B6IQG3   A0A310SCX2   A0A1W4XI02   T1H8I6   E0VMW0   A0A2R7VZ94   A0A026X2P0   A0A3L8DNP4   A0A195F448   A0A0A9WWV2   A0A0M8ZUV9   A0A310S941   F4W4Y1   A0A151XEJ6   A0A151JLH6   A0A2A3EKI7   A0A087ZVT3   A0A195CF85   A0A195BNX6   A0A0L7QJU4   A0A154PSX2   Q17BA7   A0A336MB17   E2A0W6   A0A3L9LSY2   A0A1S4F9D5   A0A1W6L170   A0A182H107   B0W521   A0A182W7U8   A0A182MDX7   A0A232FKC0   A0A182Q3D6   A0A1J1ITH8   A0A182YGS4   K7IQ73   A0A182RVK5   A0A0M4EII4   A0A1A9VXX5   A0A0L0C9S2   A0A1S4GWS3   Q7Q3M6   A0A1W4W5W6   A0A1I8NEI8   A0A0J9RTM5   B4MKM1   A0A1A9XRY2   A0A1B0BS36   B3M3Y7   A0A1B0FPF1   B4L1C0   A0A0J9RTA8   A0A3Q0IMF8   A0A1I8PRW8   B3NGT8   A0A1A9ZKB3   B4PF26   Q9VTH3   B4J2L4   A0A3B0JWG1   X2JCB2   B4QPS2   Q2LZ47   B4GZM0   A0A1A9WUV8   A0A2K6VB67   A0A182F4J2   B4HEC2   A0A084VNZ9   A0A1B0EYB4   B4LCM8   A0A0J7KKB3  

PDB

4UQQ     E-value=0.0021569,     Score=95

KEGG

101746636    no KO assigned | (RefSeq) glutamate receptor ionotropic, delta-2

GO

GO:0004970   GO:0005886   GO:0016021   GO:0005777   GO:0006635   GO:0003997   GO:0050804   GO:0035249   GO:0045211   GO:1904315   GO:0008066   GO:0009593   GO:0015276   GO:0016020   GO:0006468   GO:0016567   GO:0006810   GO:0004889   GO:0005216   GO:0016491   GO:0003824  

Length:

272

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

43.6787

Exp number, first 60 AAs:

20.8336

Total prob of N-in:

0.03121

POSSIBLE N-term signal

sequence

outside

1  -  14

TMhelix

15  -  34

inside

35  -  220

TMhelix

221  -  243

outside

244  -  272

 

 

Pi

135.784896

Theta

152.51099

Tajima's D

-0.56367

CLR

0

CSRT

0.231738413079346

Interpretation

Uncertain