Gene

KWMTBOMO05412

Annotation

PREDICTED:_TNF_receptor-associated_factor_4_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr10(-):1379625-1386280      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.913

CDS

ATGTGTTCCATTTTCGAAAGTACGATTTATCCCGATCCTGAGTCTGAGAAGGCGATAATGGGGTCGGTGGTGTACTGCATCCATCACAAAGAAGGATGTCAGTGGTCAGACGAGCTCCGCAAACTGAAGGCACATCTAAATACTTGCAAGCACGACGCGGTGCTATGTGCCGCGCACTGCGGCGCCATGATACCGCGGGTGCTCATGCAGGACCACCTCCGCTACACGTGCCCGCGGCGCCGGGCCAACTGCGAGCACTGCCACACCGAGTTCTCGGGTAGCGCGCTCGAGGAGCACCAAGGAAACTGCGGCCACGAGCCCATCTACTGCGAGAACAAGTGCGGCGCCAAGGTGCAGCGCCGACACACGCAGCAGCATCTGCAGCAGCACTGCAGCAAGCGCCTCGTGCCGTGCAGACACTGCGGCCAGAAGTACACGCAGGACACGGTGTGCGCGCACGGCGAGGGCTGTGCCCGTGCGCCCGTGCCGTGCCCGCAGCGGTGCGCCGCGCCCGTGCCGCGGGACCTGCTCGACGCGCACCTGCGGGACCACTGCACGGCCGCCGCGCTGCCCTGCTCCTTCAGGGACGCAGGATGTAGATTTAAGGGCAGTCGGCAGGCGGTGGAGCGGCACACGGAGGAGAGCTGCGCGCAGCACCTGTGCCTGGTGTCGGCAGTCGCGGCGCGGCAGGCGCGGCAGCTGGACGCGCTGCGGGCGGCGGTCGCGCGCCTGTCGCTCAACTGCACCGGCGCGCTCGTCTGGCGGATCGCGGACTGGACCGCCAAGATGGCCGAGGCCAAGTGTAAGGACGGCGTCGAGCTGGTCTCCCCCGCCTTCTACACCAGCCAGTACGGGTACAAGTTACAGGCGTCGCTCTTCCTTAACGGCAATGGAGCTGGAGAGTCCACCCACATGTCGGTTTACATCAAGATACTGCCCGGAGAGTACGACGCTTTGCTCCGCTGGCCATTCGCCCACACTGTCTCCTTCACTCTCTTCGACCAGAGCTCCAGCCCGGACCGAGCCTGCAACATTGTGGAGTCATTTGTACCGGATCCAACGTGGAAGAACTTCCAGCGACCCTCGAAAGAGCCAGACGCATTAGGATTTGGTTTCCCAAGGTTTGTATCCCACGAAATGCTCAAGAAAAGGAATTTCGTCAAAGATGATATTATGTTTTTGAGGGTCAAAGTAGACCCGAGTAAAATCGTTGCTGTTTAA

Protein

MCSIFESTIYPDPESEKAIMGSVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRANCEHCHTEFSGSALEEHQGNCGHEPIYCENKCGAKVQRRHTQQHLQQHCSKRLVPCRHCGQKYTQDTVCAHGEGCARAPVPCPQRCAAPVPRDLLDAHLRDHCTAAALPCSFRDAGCRFKGSRQAVERHTEESCAQHLCLVSAVAARQARQLDALRAAVARLSLNCTGALVWRIADWTAKMAEAKCKDGVELVSPAFYTSQYGYKLQASLFLNGNGAGESTHMSVYIKILPGEYDALLRWPFAHTVSFTLFDQSSSPDRACNIVESFVPDPTWKNFQRPSKEPDALGFGFPRFVSHEMLKKRNFVKDDIMFLRVKVDPSKIVAV

Uniprot

A0A212EVI8   A0A2H1V7L2   A0A1C9EGI2   A0A0N1PG65   A0A194QHI7   A0A1W4XIH4   + More
A0A1W4XTX5   A0A1W4XT07   A0A139WBB3   A0A2J7PJY4   A0A2J7PJY1   A0A0C9R7N9   A0A0C9QKE8   A0A067R6R7   A0A0L7RJ77   A0A026WDT0   A0A1Y1KIR6   A0A195EQ56   A0A151I8A3   A0A195DMU5   F4W641   A0A195AVX0   A0A0M8ZPL7   A0A158P1W5   A0A154PEK4   A0A088A6J7   A0A151WP98   E2B8N5   N6TUQ2   A0A2A3ECI0   E2AUX8   A0A0A9WVA1   B0WD85   A0A0A9WSC4   A0A1B0GMF8   A0A1Y1KDR5   A0A1B6LGA6   A0A1B6MEI9   A0A1B6FZK8   A0A182Y671   A0A182P1P1   Q175H1   A0A182V8V2   A0A0M4EES3   A0A1B6FPW2   A0A182W8N8   A0A182HR64   A0A182KZ60   Q7PJX7   A0A182GEW8   A0A182M2D9   B4KES9   W5JVA4   A0A182Q5L2   A0A2M4CM16   A0A182TD50   A0A182JH31   A0A2M4CM87   A0A084WQR8   A0A182NNZ6   A0A023F4I8   A0A2M4ANU3   A0A1I8Q7J9   A0A1I8Q7I9   T1PKX1   A0A1W4VY76   B4MDS3   T1HRA7   A0A182F351   A0A2R7VSE1   A0A2L2Y264   A0A1I8N536   A0A310SHH6   B4MZP5   A0A0L0CIG4   A0A1J1HYG8   A0A0J9QWH8   Q9XYR0   B3MU48   B4NYJ2   A0A0Q5W8W3   Q9UAC5   A0A2P6L2P4   B4I379   A0A0J9QVI3   A0A0J9TF99   A8DYU9   B4JQE4   A0A0R1DQR4   A0A0Q5WMC6   A0A3B0JBZ9   W8AK90   A0A0K8UVS8   A0A0R3NTJ4   A0A3B0K2Q3   A0A0K8U1N6   A0A0R3NT88   A0A034VAY2   T1J2J1   A0A1B6IPW5  

Pubmed

22118469    26354079    18362917    19820115    24845553    24508170    + More
30249741    28004739    21719571    21347285    20798317    23537049    25401762    26823975    25244985    17510324    20966253    12364791    14747013    17210077    26483478    17994087    20920257    23761445    24438588    25474469    25315136    26561354    26108605    22936249    10021364    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24495485    15632085    25348373   

EMBL

AGBW02012180    OWR45506.1    ODYU01001085    SOQ36828.1    KX778609    AON96603.1    + More
KQ461033    KPJ09974.1    KQ458793    KPJ04972.1    KQ971372    KYB25183.1    NEVH01024944    PNF16645.1    PNF16644.1    GBYB01004045    JAG73812.1    GBYB01004039    JAG73806.1    KK852704    KDR18058.1    KQ414582    KOC70915.1    KK107293    QOIP01000005    EZA53179.1    RLU22628.1    GEZM01086369    JAV59505.1    KQ982021    KYN30415.1    KQ978397    KYM94207.1    KQ980724    KYN14152.1    GL887707    EGI70176.1    KQ976731    KYM76326.1    KQ435922    KOX68505.1    ADTU01006901    KQ434874    KZC09708.1    KQ982892    KYQ49623.1    GL446361    EFN87941.1    APGK01054012    KB741242    ENN72091.1    KZ288300    PBC28886.1    GL442912    EFN62761.1    GBHO01032243    GBRD01009474    GDHC01007516    JAG11361.1    JAG56350.1    JAQ11113.1    DS231895    EDS44357.1    GBHO01032242    JAG11362.1    AJVK01011452    AJVK01011453    AJVK01011454    GEZM01086370    JAV59504.1    GEBQ01017246    JAT22731.1    GEBQ01005645    JAT34332.1    GECZ01014150    JAS55619.1    CH477400    EAT41749.1    CP012523    ALC38742.1    GECZ01017514    JAS52255.1    APCN01001653    AAAB01008980    EAA43586.3    JXUM01010543    JXUM01010544    KQ560311    KXJ83113.1    AXCM01000708    CH933807    EDW12979.1    ADMH02000392    ETN66724.1    AXCN02002100    GGFL01002198    MBW66376.1    GGFL01002197    MBW66375.1    ATLV01025677    KE525397    KFB52562.1    GBBI01002590    JAC16122.1    GGFK01009122    MBW42443.1    KA648765    AFP63394.1    CH940661    EDW71334.1    ACPB03000491    KK854023    PTY09590.1    IAAA01006717    IAAA01006718    IAAA01006719    IAAA01006720    IAAA01006721    IAAA01006722    LAA02251.1    KQ766110    OAD53735.1    CH963920    EDW77830.1    JRES01000438    KNC31279.1    CVRI01000036    CRK93069.1    CM002910    KMY88049.1    AF119794    AE014134    AY094792    AAD34346.1    AAF51024.1    AAM11145.1    CH902624    EDV33377.1    CM000157    EDW87625.2    CH954177    KQS70087.1    AF079837    AF111422    AAD47894.1    AAG21891.1    MWRG01002285    PRD32850.1    CH480820    EDW54224.1    KMY88048.1    KMY88050.1    ABV53619.2    CH916372    EDV99124.1    KRJ97267.1    KQS70088.1    OUUW01000004    SPP79897.1    GAMC01017530    JAB89025.1    GDHF01021671    JAI30643.1    CH379060    KRT04434.1    SPP79896.1    GDHF01031650    JAI20664.1    KRT04433.1    GAKP01018481    GAKP01018480    JAC40471.1    JH431806    GECU01018766    JAS88940.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000192223    UP000007266    UP000235965    + More
UP000027135    UP000053825    UP000053097    UP000279307    UP000078541    UP000078542    UP000078492    UP000007755    UP000078540    UP000053105    UP000005205    UP000076502    UP000005203    UP000075809    UP000008237    UP000019118    UP000242457    UP000000311    UP000002320    UP000092462    UP000076408    UP000075885    UP000008820    UP000075903    UP000092553    UP000075920    UP000075840    UP000075882    UP000007062    UP000069940    UP000249989    UP000075883    UP000009192    UP000000673    UP000075886    UP000075902    UP000075880    UP000030765    UP000075884    UP000095300    UP000095301    UP000192221    UP000008792    UP000015103    UP000069272    UP000007798    UP000037069    UP000183832    UP000000803    UP000007801    UP000002282    UP000008711    UP000001292    UP000001070    UP000268350    UP000001819   

Pfam

PF02176   zf-TRAF

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR001293   Znf_TRAF       
IPR008974   TRAF-like       
IPR027138   TRAF4       
IPR002083   MATH/TRAF_dom       
IPR012227   TNF_rcpt--assoc_TRAF       
IPR013087   Znf_C2H2_type       
IPR037307   TRAF4_MATH       

SUPFAM

SSF49599   SSF49599       

Gene 3D

2.60.210.10     3.30.40.10    

CDD

cd03781  MATH_TRAF4

ProteinModelPortal

A0A212EVI8   A0A2H1V7L2   A0A1C9EGI2   A0A0N1PG65   A0A194QHI7   A0A1W4XIH4   + More
A0A1W4XTX5   A0A1W4XT07   A0A139WBB3   A0A2J7PJY4   A0A2J7PJY1   A0A0C9R7N9   A0A0C9QKE8   A0A067R6R7   A0A0L7RJ77   A0A026WDT0   A0A1Y1KIR6   A0A195EQ56   A0A151I8A3   A0A195DMU5   F4W641   A0A195AVX0   A0A0M8ZPL7   A0A158P1W5   A0A154PEK4   A0A088A6J7   A0A151WP98   E2B8N5   N6TUQ2   A0A2A3ECI0   E2AUX8   A0A0A9WVA1   B0WD85   A0A0A9WSC4   A0A1B0GMF8   A0A1Y1KDR5   A0A1B6LGA6   A0A1B6MEI9   A0A1B6FZK8   A0A182Y671   A0A182P1P1   Q175H1   A0A182V8V2   A0A0M4EES3   A0A1B6FPW2   A0A182W8N8   A0A182HR64   A0A182KZ60   Q7PJX7   A0A182GEW8   A0A182M2D9   B4KES9   W5JVA4   A0A182Q5L2   A0A2M4CM16   A0A182TD50   A0A182JH31   A0A2M4CM87   A0A084WQR8   A0A182NNZ6   A0A023F4I8   A0A2M4ANU3   A0A1I8Q7J9   A0A1I8Q7I9   T1PKX1   A0A1W4VY76   B4MDS3   T1HRA7   A0A182F351   A0A2R7VSE1   A0A2L2Y264   A0A1I8N536   A0A310SHH6   B4MZP5   A0A0L0CIG4   A0A1J1HYG8   A0A0J9QWH8   Q9XYR0   B3MU48   B4NYJ2   A0A0Q5W8W3   Q9UAC5   A0A2P6L2P4   B4I379   A0A0J9QVI3   A0A0J9TF99   A8DYU9   B4JQE4   A0A0R1DQR4   A0A0Q5WMC6   A0A3B0JBZ9   W8AK90   A0A0K8UVS8   A0A0R3NTJ4   A0A3B0K2Q3   A0A0K8U1N6   A0A0R3NT88   A0A034VAY2   T1J2J1   A0A1B6IPW5  

PDB

3ZJB     E-value=1.45358e-48,     Score=487

KEGG

101737830    K09848 TNF receptor-associated factor 4 | (RefSeq) TNF receptor-associated factor 4

PATHWAY

04214    Apoptosis - fly - Bombyx mori (domestic silkworm)

GO

GO:0042981   GO:0008270   GO:0007165   GO:0031625   GO:0031996   GO:0046330   GO:0032991   GO:0005737   GO:0005164   GO:0003676   GO:0007250   GO:0003384   GO:0046529   GO:0043065   GO:0034332   GO:0007370   GO:0050829   GO:0045179   GO:0045167   GO:0001654   GO:0045177   GO:0007391   GO:0005515   GO:0004842   GO:0016567   GO:0006810   GO:0004889   GO:0005216   GO:0045211   GO:0016491   GO:0003824  

PANTHER

PTHR10131:SF120  

Length:

406

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02918

Exp number, first 60 AAs:

0.00379

Total prob of N-in:

0.00650

outside

1  -  406

 

 

Pi

28.847001

Theta

33.734024

Tajima's D

-1.53017

CLR

258.167704

CSRT

0.0579971001449927

Interpretation

Uncertain