Gene

KWMTBOMO05409

Pre Gene Modal

BGIBMGA000889

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr10(+):1205246-1207095      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.806 PlasmaMembrane   Reliability : 1.583

CDS

ATGAGCTGTGATTACGGATATGTGCGCCTATCCAGTACATTTCTGTTACGTAGGAGTCCTGCAATTCTGTTTGAAGGTGTGGTGGTGGCTATCATACAACACAAGATATTTGACAGATGCCTGAATCTCGCTTCCGACATTTTCAAGATAAGCTTGCATATATACAAGTTCCGAACAACATTCGGACCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGACAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAACAAAATTCTTATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCACCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAATAGGCGGAAACCCATCCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGCGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGGCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCCCTCCCGACTAGGCGCGTCAACACCTCCGCCCCCGTCACTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCTGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCGACATTAAGACGGTACGCGACCGTGCCGCCTTCATTCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCATGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCATTCCAAATCATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTTCAGTCGGCGTCCATGTGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACATAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTCCCGATCCACTAACGGTGCTTTTAGGTACTTCAAGCACCGGTCACCGTTCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGTAAATTAA

Protein

MSCDYGYVRLSSTFLLRRSPAILFEGVVVAIIQHKIFDRCLNLASDIFKISLHIYKFRTTFGPGKPKNETASYRPISLLPAIDKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTSAPVTRPITMFDQPIPWALKVKYLGVTLDSRMTFRPDIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYACVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMCHFDKAARHENPLIVAAGNYIPDPADIMESSRRRPKHVISDPPDPLTVLLGTSSTGHRSRRTRRLRRRARRVN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
A0A194Q1H8   O96544   O96546   A0A1Y1NA23   V5GNF3   A0A2S2PR14   A0A2S2Q823   X1WMU5   A0A139WA11   V5GNJ2   X1WLB2   X1WXU3   A0A139W8G9   A0A087U2S8   V5I850   A0A224XF24   J9KKL3   X1WWC4   A0A087T1W0   J9KC83   A0A2J7QQP1   A0A2J7RRU8   A0A2S2PH29   A0A3N5Z7I3   A0A1Y1M7E9   A0A023EYS8   A0A023EZE6   A0A2S2PX53   A0A2S2NGV8   A0A0L0CBP5   A0A2S2PPK8   A0A2A4K8E7   A0A182GA28   A0A1Y1LKN6   A0A2S2QJM7   A0A2J7R7D0   A0A0A9Z4E6   A0A0A9YN51   A0A2H8TWD9   A0A2J7R8R8   A0A2J7PDM0   Q07995   A0A2J7R4B1   A0A2J7RB54   A0A0J7KBP6   A0A2J7RPU2   A0A2J7QUJ9   A0A2J7PVE7   A0A2H8TES1   A0A2J7RIW7   A0A2S2N814   A0A2J7R4B7   A0A2J7PMP6   A0A2A4K918   A0A2J7QPI2   A0A2J7R579   A0A2J7Q4F7   A0A2J7RM10   A0A2S2Q7E7   A0A2J7RS77   A0A2J7Q059   X1WL89   A0A2M4BD67   O76197   A0A023F742   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7R6U1   A0A2J7PMP9   A0A1B6EGD8   X1X928   A0A2J7QFL0   A0A2J7R2B7   A0A2J7RKP3   A0A224X6Q4   A0A2J7QB68   A0A2M4BDV6   A0A2J7QR37   A0A2S2QTZ8   A0A2J7PBY3   A0A2J7QY69   A0A2S2Q383   A0A2J7PDS9   J9M522   A0A0A9YJ00   A0A0A9YU04   A0A1B6D7J6   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7PVX3   A0A023F6S4  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    30086797    25474469    26108605    26483478    25401762    8387152    8934517   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    KQ459580    KPI99178.1    AF081101    AAC72919.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    GGMS01004685    MBY73888.1    ABLF02014862    ABLF02014866    ABLF02061908    KQ971729    KYB24751.1    GALX01005299    JAB63167.1    ABLF02042518    ABLF02057746    ABLF02008933    KQ973342    KXZ75569.1    KK117880    KFM71667.1    GALX01005300    JAB63166.1    GFTR01008038    JAW08388.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK113014    KFM59099.1    ABLF02033757    NEVH01012084    PNF30905.1    NEVH01000598    PNF43535.1    GGMR01016114    MBY28733.1    RPOV01000134    RPJ78669.1    GEZM01038405    JAV81653.1    GBBI01004395    JAC14317.1    GBBI01004571    JAC14141.1    GGMS01000737    MBY69940.1    GGMR01003407    MBY16026.1    JRES01000644    KNC29657.1    GGMR01018716    MBY31335.1    NWSH01000032    PCG80497.1    JXUM01155316    KQ572171    KXJ68070.1    GEZM01053022    JAV74219.1    GGMS01008766    MBY77969.1    NEVH01006736    PNF36716.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    GFXV01006424    MBW18229.1    NEVH01006721    PNF37225.1    NEVH01026386    PNF14434.1    S59870    AAB26437.2    NEVH01007578    PNF35646.1    NEVH01005938    PNF38077.1    LBMM01010106    KMQ87671.1    NEVH01001355    PNF42855.1    NEVH01010546    PNF32261.1    NEVH01020963    PNF20308.1    GFXV01000774    MBW12579.1    NEVH01003017    PNF40781.1    GGMR01000676    MBY13295.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    PCG80496.1    NEVH01012089    PNF30491.1    NEVH01007393    PNF35987.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GGMS01004444    MBY73647.1    NEVH01000280    PNF43672.1    NEVH01020071    PNF21969.1    ABLF02019349    ABLF02041900    GGFJ01001858    MBW50999.1    AF012049    AAC24972.1    GBBI01001693    JAC17019.1    NEVH01019964    PNF22161.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    NEVH01023961    PNF17613.1    GEDC01000337    JAS36961.1    ABLF02066620    NEVH01014858    PNF27387.1    NEVH01007841    PNF34974.1    NEVH01002716    PNF41415.1    GFTR01008279    JAW08147.1    NEVH01016302    PNF25823.1    GGFJ01001857    MBW50998.1    NEVH01011985    PNF31054.1    GGMS01012005    MBY81208.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    GGMS01002992    MBY72195.1    NEVH01026154    PNF14491.1    ABLF02024246    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GEDC01015644    JAS21654.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    NEVH01020940    PNF20481.1    GBBI01001646    JAC17066.1   

Proteomes

UP000053268    UP000007819    UP000007266    UP000054359    UP000235965    UP000037069    + More
UP000218220    UP000069940    UP000249989    UP000036403   

PRIDE

Q9XXW0    Q93137    Q9BPQ0    K9N5J5   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF10551   MULE
PF07530   PRE_C2HC

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR018289   MULE_transposase_dom       
IPR006579   Pre_C2HC_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
A0A194Q1H8   O96544   O96546   A0A1Y1NA23   V5GNF3   A0A2S2PR14   A0A2S2Q823   X1WMU5   A0A139WA11   V5GNJ2   X1WLB2   X1WXU3   A0A139W8G9   A0A087U2S8   V5I850   A0A224XF24   J9KKL3   X1WWC4   A0A087T1W0   J9KC83   A0A2J7QQP1   A0A2J7RRU8   A0A2S2PH29   A0A3N5Z7I3   A0A1Y1M7E9   A0A023EYS8   A0A023EZE6   A0A2S2PX53   A0A2S2NGV8   A0A0L0CBP5   A0A2S2PPK8   A0A2A4K8E7   A0A182GA28   A0A1Y1LKN6   A0A2S2QJM7   A0A2J7R7D0   A0A0A9Z4E6   A0A0A9YN51   A0A2H8TWD9   A0A2J7R8R8   A0A2J7PDM0   Q07995   A0A2J7R4B1   A0A2J7RB54   A0A0J7KBP6   A0A2J7RPU2   A0A2J7QUJ9   A0A2J7PVE7   A0A2H8TES1   A0A2J7RIW7   A0A2S2N814   A0A2J7R4B7   A0A2J7PMP6   A0A2A4K918   A0A2J7QPI2   A0A2J7R579   A0A2J7Q4F7   A0A2J7RM10   A0A2S2Q7E7   A0A2J7RS77   A0A2J7Q059   X1WL89   A0A2M4BD67   O76197   A0A023F742   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7R6U1   A0A2J7PMP9   A0A1B6EGD8   X1X928   A0A2J7QFL0   A0A2J7R2B7   A0A2J7RKP3   A0A224X6Q4   A0A2J7QB68   A0A2M4BDV6   A0A2J7QR37   A0A2S2QTZ8   A0A2J7PBY3   A0A2J7QY69   A0A2S2Q383   A0A2J7PDS9   J9M522   A0A0A9YJ00   A0A0A9YU04   A0A1B6D7J6   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7PVX3   A0A023F6S4  

PDB

6AR3     E-value=0.0006208,     Score=103

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021   GO:0008270   GO:0003676  

Length:

512

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.81277

Exp number, first 60 AAs:

0.7612

Total prob of N-in:

0.05729

outside

1  -  512

 

 

Pi

2.620566

Theta

4.942151

Tajima's D

-1.373888

CLR

1830.391832

CSRT

0.0699465026748663

Interpretation

Uncertain