Gene

KWMTBOMO05395

Annotation

PREDICTED:_brahma-associated_protein_of_60_kDa_[Papilio_xuthus]

Location

Bomo_Chr10(-):86362-88245      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.959

CDS

ATGCTAACAAGATCAAATTGTCAACAGGCACGCAGCGGATTCGGCGGCGGCGGCGTAGTGGCAGGAGGGGGCGCGCGAGCGGCGGGGGGTGCGGCCTATGGCGGCGGCCCCCGCCCCGCGCCGCCCTCGCCCTCCCCCGTGGCGCCCCCCTCCGCCGTCGCACAGAAGCGCGGGGGTGAGGTCCGCGCCCCGCACCCGCCGCCGCACAAGCCGCTGTACGACGCGTACTCGCAGCCGTCCGCCAAGCGCAAGAAGCGCCTCGCCGACAAGATCCTGCCGCAGAAGGTGCGGGACCTCGTGCCCGAGTCGCAGGCCTACATGGACCTGCTCGCGTTCGAACGCAAACTCGACGCCACCATAATGCGCAAACGTCTCGACATTCAAGAAGCCCTCAAACGCCCCATGAAACAGAAACGAAAACTTCGAATATTCATCTCCAACACGTTCTACCCCGGTCAGGGCGACAACGCGGTGCCGTCGTGGGAGCTGCGCGTGGAGGGCCGTCTGCTCGACGACTCCAAGAACGATCCGAACAAGAATGTCCCGTTGCAGGTGAAGCGGAAGTTTTCGTCGTTCTTCAAGTCTCTGGTGATAGAACTCGATAAAGATCTGTACGGGCCCGACAACCACCTCGTGGAGTGGCACCGCACGGTGACCACGCAGGAGACGGACGGCTTCCAGGTGAAGCGACCCGGCTACAAGAACGTGCGGTGCACCATCCTGCTGCTGCTGGACTACCAGCCGTTGCAGTTCAAGCTGGACCAGCGGCTGGCGCGGCTGTTGGGCGTGCACACGCAGACGCGGCCCGTCATAGTGAACGCGCTGTGGCAGTACGTGAAGACGCACCGCCTGCAGGACCCGCACGAGCGCGAGTACATCGCCTGCGACCGCTACCTCGAGCAGATCTTCGGGGCACCGCGCGTCAAGCTGGCCGAGGTGCCGGCGCGCCTGGGCGCCCTGCTGCACGCGCCCGACCCCATCGTCATCAACCACGTCATCGCCGTGGAGCCGCCGCACGACGCCAAGCAGACCGCCTGCTACGACATCGACGTCGAGGTGGACGACACGCTCAAGGCGCAGATGAACAACTTCCTGCTCAGCACCGCCAACCAGCAGGAGATCCAAGGCCTCGACTCCAAGATCCACGAGACTGTGGACACCATCAACCAGTTGAAAACAAACCGCGAGTTCTTCTTGAGCTTCAGCAAGGATCCGCAGCAGTTCATCCAGAAGTGGCTCGTCAGTCAGTCCAGAGACCTCAAGAGCATGAGCGGCGGCGCCAGCGGCAACCCGGAGGAGGAGCGGCGCGCACAGTTCTACTGCGCGGGCTGGGCGGGCGAGGCGGCCGCGCGACACCTGCACGCGCGCCTGCTGGCCCGCCGCCGCGACCTCGACCTGGCGCTGCGCCCCGCGCTCCTTTAA

Protein

MLTRSNCQQARSGFGGGGVVAGGGARAAGGAAYGGGPRPAPPSPSPVAPPSAVAQKRGGEVRAPHPPPHKPLYDAYSQPSAKRKKRLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPGQGDNAVPSWELRVEGRLLDDSKNDPNKNVPLQVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTVTTQETDGFQVKRPGYKNVRCTILLLLDYQPLQFKLDQRLARLLGVHTQTRPVIVNALWQYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKLAEVPARLGALLHAPDPIVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGASGNPEEERRAQFYCAGWAGEAAARHLHARLLARRRDLDLALRPALL

Uniprot

A0A212F517   A0A2H1WDF9   S4PE50   A0A232FC06   K7J011   A0A0C9RM20   + More
A0A158NW78   A0A336K3R2   E9IHD0   A0A195FW01   A0A026VZV2   A0A195EBU8   F4WNG6   A0A195B876   A0A0T6B7F6   A0A151WVH3   N6T5C8   A0A151IQ00   E2BJ35   A0A1W4X460   E2A8V8   D6X1C7   A0A1B6C299   A0A224XB32   A0A154NXR6   J3JT87   A0A310SK33   A0A1B6G9X1   A0A0L7RAZ3   A0A0N0U4U1   A0A1J1IQK7   E0VZ22   U5EWY1   A0A1Y1MM78   A0A0P4VWG3   A0A2A3E676   A0A088ASX9   A0A2J7RJ06   A0A0V0G694   A0A023F5K6   A0A067QVH7   A0A347ZJ96   A0A2S2QL59   A0A2S2PU27   A0A2M4BKN6   J9JYG4   A0A182FHB2   A0A1B0CHL2   W5JNB0   A0A2H8TP99   A0A182N7X6   A0A1Q3F1K6   A0A182VDN5   A0A0K8S4J4   A0A182UBA0   A0A182XD34   Q7Q7F6   A0A0A9WR02   A0A182HMG8   A0A182QTE7   A0A182J057   A0A146M4F7   A0A146ME40   A0A182KD89   A0A182PGF0   A0A0A9X1A5   A0A182YPZ8   A0A084W166   A0A182M0A4   A0A182RX36   A0A1S3DBH4   A0A182SCE2   A0A182WAK3   B0XIC6   A0A1L8DWY3   Q0IEK9   A0A1L8DXP5   A0A1B0DNL8   A0A1S4FN33   A0A182J3D2   T1J8H2   A0A0P4Z628   A0A2J7RIZ4   A0A1A9XGZ4   A0A1B0ANF1   A0A0P6ISZ0   A0A0P5YIF0   A0A0P5AYV7   A0A0N8CBX6   A0A1B0FNR7   A0A0P5ZC21   A0A1A9VRM7   A0A0P5HG74   A0A0P5R174   A0A1A9Z1P4   A0A1A9W9G8   A0A084VVA0   A0A0P4YQM3   A0A0N8A195  

Pubmed

22118469    23622113    28648823    20075255    21347285    21282665    + More
24508170    30249741    21719571    23537049    20798317    18362917    19820115    22516182    20566863    28004739    27129103    25474469    24845553    20920257    23761445    12364791    14747013    17210077    25401762    26823975    25244985    24438588    17510324   

EMBL

AGBW02010275    OWR48827.1    ODYU01007913    SOQ51108.1    GAIX01003321    JAA89239.1    + More
NNAY01000463    OXU28195.1    GBYB01008026    JAG77793.1    ADTU01027831    ADTU01027832    UFQS01000101    UFQT01000101    SSW99606.1    SSX19986.1    GL763242    EFZ20012.1    KQ981215    KYN44606.1    KK107522    QOIP01000001    EZA49333.1    RLU27290.1    KQ979074    KYN22700.1    GL888237    EGI64159.1    KQ976565    KYM80450.1    LJIG01009353    KRT83250.1    KQ982706    KYQ51838.1    APGK01043268    KB741014    KB632328    ENN75399.1    ERL92535.1    KQ976801    KYN08229.1    GL448558    EFN84185.1    GL437663    EFN70187.1    KQ971372    EFA10612.1    GEDC01029660    JAS07638.1    GFTR01006810    JAW09616.1    KQ434781    KZC04466.1    BT126443    AEE61407.1    KQ760498    OAD60089.1    GECZ01010549    JAS59220.1    KQ414618    KOC67995.1    KQ435798    KOX73452.1    CVRI01000054    CRL00785.1    DS235849    EEB18628.1    GANO01001203    JAB58668.1    GEZM01028964    JAV86188.1    GDKW01000135    JAI56460.1    KZ288361    PBC26994.1    NEVH01003011    PNF40806.1    GECL01002613    JAP03511.1    GBBI01002275    JAC16437.1    KK852969    KDR13121.1    FX985664    BBA84402.1    GGMS01009067    MBY78270.1    GGMR01020294    MBY32913.1    GGFJ01004498    MBW53639.1    ABLF02036303    ABLF02036310    AJWK01012454    ADMH02001057    ETN64259.1    GFXV01004034    MBW15839.1    GFDL01013610    JAV21435.1    GBRD01018162    JAG47665.1    AAAB01008960    EAA11403.3    GBHO01032717    GBRD01018161    JAG10887.1    JAG47666.1    APCN01004434    AXCN02000907    AXCP01009255    GDHC01005179    JAQ13450.1    GDHC01000635    JAQ17994.1    GBHO01032719    GBRD01018164    GDHC01006913    GDHC01002473    JAG10885.1    JAG47663.1    JAQ11716.1    JAQ16156.1    ATLV01019212    KE525264    KFB43960.1    AXCM01004189    DS233289    EDS29153.1    GFDF01003180    JAV10904.1    CH477600    EAT38454.1    GFDF01003059    JAV11025.1    AJVK01001415    JH431954    GDIP01218123    JAJ05279.1    PNF40805.1    JXJN01000809    GDIQ01005681    JAN89056.1    GDIP01058997    JAM44718.1    GDIP01192376    GDIQ01120394    JAJ31026.1    JAL31332.1    GDIQ01094851    GDIQ01092700    JAL56875.1    CCAG010016826    GDIP01045810    JAM57905.1    GDIQ01233496    JAK18229.1    GDIQ01109336    JAL42390.1    ATLV01017167    KE525157    KFB41894.1    GDIP01226076    JAI97325.1    GDIP01192377    JAJ31025.1   

Proteomes

UP000007151    UP000215335    UP000002358    UP000005205    UP000078541    UP000053097    + More
UP000279307    UP000078492    UP000007755    UP000078540    UP000075809    UP000019118    UP000030742    UP000078542    UP000008237    UP000192223    UP000000311    UP000007266    UP000076502    UP000053825    UP000053105    UP000183832    UP000009046    UP000242457    UP000005203    UP000235965    UP000027135    UP000007819    UP000069272    UP000092461    UP000000673    UP000075884    UP000075903    UP000075902    UP000076407    UP000007062    UP000075840    UP000075886    UP000075880    UP000075881    UP000075885    UP000076408    UP000030765    UP000075883    UP000075900    UP000079169    UP000075901    UP000075920    UP000002320    UP000008820    UP000092462    UP000092443    UP000092460    UP000092444    UP000078200    UP000092445    UP000091820   

Pfam

PF02201   SWIB        + More
PF00025   Arf
PF02883   Alpha_adaptinC2
PF01602   Adaptin_N

Interpro

IPR019835   SWIB_domain        + More
IPR038041   SMARCD1       
IPR003121   SWIB_MDM2_domain       
IPR036885   SWIB_MDM2_dom_sf       
IPR002553   Clathrin/coatomer_adapt-like_N       
IPR013041   Clathrin_app_Ig-like_sf       
IPR027417   P-loop_NTPase       
IPR008152   Clathrin_a/b/g-adaptin_app_Ig       
IPR011989   ARM-like       
IPR006689   Small_GTPase_ARF/SAR       
IPR008153   GAE_dom       
IPR016024   ARM-type_fold       

SUPFAM

SSF47592   SSF47592        + More
SSF52540   SSF52540       
SSF49348   SSF49348       
SSF48371   SSF48371       

Gene 3D

1.10.245.10     1.25.10.10    

ProteinModelPortal

A0A212F517   A0A2H1WDF9   S4PE50   A0A232FC06   K7J011   A0A0C9RM20   + More
A0A158NW78   A0A336K3R2   E9IHD0   A0A195FW01   A0A026VZV2   A0A195EBU8   F4WNG6   A0A195B876   A0A0T6B7F6   A0A151WVH3   N6T5C8   A0A151IQ00   E2BJ35   A0A1W4X460   E2A8V8   D6X1C7   A0A1B6C299   A0A224XB32   A0A154NXR6   J3JT87   A0A310SK33   A0A1B6G9X1   A0A0L7RAZ3   A0A0N0U4U1   A0A1J1IQK7   E0VZ22   U5EWY1   A0A1Y1MM78   A0A0P4VWG3   A0A2A3E676   A0A088ASX9   A0A2J7RJ06   A0A0V0G694   A0A023F5K6   A0A067QVH7   A0A347ZJ96   A0A2S2QL59   A0A2S2PU27   A0A2M4BKN6   J9JYG4   A0A182FHB2   A0A1B0CHL2   W5JNB0   A0A2H8TP99   A0A182N7X6   A0A1Q3F1K6   A0A182VDN5   A0A0K8S4J4   A0A182UBA0   A0A182XD34   Q7Q7F6   A0A0A9WR02   A0A182HMG8   A0A182QTE7   A0A182J057   A0A146M4F7   A0A146ME40   A0A182KD89   A0A182PGF0   A0A0A9X1A5   A0A182YPZ8   A0A084W166   A0A182M0A4   A0A182RX36   A0A1S3DBH4   A0A182SCE2   A0A182WAK3   B0XIC6   A0A1L8DWY3   Q0IEK9   A0A1L8DXP5   A0A1B0DNL8   A0A1S4FN33   A0A182J3D2   T1J8H2   A0A0P4Z628   A0A2J7RIZ4   A0A1A9XGZ4   A0A1B0ANF1   A0A0P6ISZ0   A0A0P5YIF0   A0A0P5AYV7   A0A0N8CBX6   A0A1B0FNR7   A0A0P5ZC21   A0A1A9VRM7   A0A0P5HG74   A0A0P5R174   A0A1A9Z1P4   A0A1A9W9G8   A0A084VVA0   A0A0P4YQM3   A0A0N8A195  

PDB

1UHR     E-value=1.11361e-27,     Score=307

KEGG

101735816    K11650 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D | (RefSe

GO

GO:0071564   GO:0071565   GO:0016514   GO:0016192   GO:0006886   GO:0030117   GO:0005525   GO:0005515   GO:0006810   GO:0016020   GO:0005230   GO:0004889   GO:0005216   GO:0045211   GO:0016491   GO:0003824  

PANTHER

PTHR13844:SF1  

Subcellular location

Cytoplasm  

Length:

473

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.05880999999996

Exp number, first 60 AAs:

8.05458

Total prob of N-in:

0.37409

outside

1  -  473

 

 

Pi

18.668349

Theta

12.509272

Tajima's D

-0.739344

CLR

143.681375

CSRT

0.193790310484476

Interpretation

Uncertain