SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05393
Annotation
PREDICTED:_aquaporin_AQPAe.a-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.873
 

Sequence

CDS
ATGCCCTCCACAGACGAAGATACGCCGCGCGGTTTTTCCGGCTGGGTGCGGCGATGGTGGCGAGCGTTGGTCTCCGAGCTGCTGGCCACGGCGTTCCTCGTGTGGCTCGGCGTCAGCTCCGTGGTGCCGTACAAAGGGAAGGAGGCCGTCGTGCTGTCACATCCCGCTTTTGCTTTCGGGTTTGTGGTGCTCGGCAATGCGATGGCGTTCGGGCCGACGTCGGGTGCGCACATGAACCCGGCCGTGACGCTGGCTGCCGCGCTGCAGGGCCGCATGTCCCCGGCGCTGGCCGCCGCCTACACGGTGGCGCAGGTGCTGGGCGCGTGTGCCGGCTTCGGTGCACTGGCCGCCGTGACGCCCGCCAGCGCTCTGGGCACGGACGAGGGCTGCACGCTGCCGGCGAGGGATGTGTCGGCGCTGGCGGCGGCGGCCGTGGAGGCGGCCCTCACGGCGGTGCTCGCGTTTGCGTGTTGCGGCGTTTGGAAGGCGCACGACGAGAGCGGTCCGGACCCGATGGTGCCCGTGAAGCTGGGACTCGTGGTGGCCGGGCTGGTTTTCGCCGGGGGACACGCGACGGGAGCTAGCCTGAACCCTGCTCGTAGCTTCGCACCGGCTTTATATCACGGAATTTGGCAATATCATTGGGTGTACTGGGTGGGTCCGCTGGGCGGCGCGGGGCTGGCGGCGGTGCTGCACCGCGCGCTGCTGAGCCCGCGGGCCGCGCCGAGCCGCGCCGCACCGTCCTGCGCTGAAGAAGTGCCGCTCGAAGATAAGCCATGA
Protein
MPSTDEDTPRGFSGWVRRWWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPAFAFGFVVLGNAMAFGPTSGAHMNPAVTLAAALQGRMSPALAAAYTVAQVLGACAGFGALAAVTPASALGTDEGCTLPARDVSALAAAAVEAALTAVLAFACCGVWKAHDESGPDPMVPVKLGLVVAGLVFAGGHATGASLNPARSFAPALYHGIWQYHWVYWVGPLGGAGLAAVLHRALLSPRAAPSRAAPSCAEEVPLEDKP

Summary

Similarity
Belongs to the MIP/aquaporin (TC 1.A.8) family.
EMBL
ODYU01001418    SOQ37574.1    AB469883    BAH47555.1    AGBW02010275    OWR48824.1    + More
KQ461033    KPJ09956.1    KQ458793    KPJ04942.1    JTDY01008629    KOB64472.1    KQ459606    KPI91346.1    KQ459896    KPJ19480.1    NWSH01008553    PCG62502.1    KPJ19479.1    KPI91347.1    KX808646    API68430.1    BABH01028012    AB245966    BAE97427.1    AGBW02013713    OWR42935.1    CH954179    EDV56838.2    CM000158    EDW92362.1    KF649618    AHB86602.2    KRK00474.1    AE013599    BT044510    AAF47034.2    ACH95284.1    CH902619    EDV36664.1    AY069151    AAL39296.1    KPU76340.1    GFTR01004274    JAW12152.1    AAO41346.2    BT133299    AFC97495.1    GDAI01001370    JAI16233.1    CH964282    EDW85616.1    CM000362    CM002911    EDX08402.1    KMY96068.1    KB631646    ERL84992.1    CH480824    EDW56981.1    CH479183    EDW36071.1    CM000071    EDY69116.1    KPI91349.1    KMY96069.1    KRT02438.1    BT133271    AFC35456.1    HQ711955    AEV57516.1    BT128390    AEE63348.1    GAHY01001350    JAA76160.1    HQ711954    AEV57515.1    GDKW01001977    JAI54618.1    APGK01044994    APGK01044995    APGK01044996    APGK01044997    APGK01044998    APGK01044999    APGK01045000    KB741028    ENN74861.1    GFDF01009303    JAV04781.1    GFDF01009237    JAV04847.1    AGBW02008039    OWR54234.1    GEDC01011634    JAS25664.1    AJ250342    CAC13959.1    GDHF01033001    JAI19313.1    GDHF01016794    JAI35520.1    OUUW01000001    SPP72999.1    GBBI01001583    JAC17129.1    GAKP01019525    GAKP01019524    JAC39428.1    GAKP01019523    JAC39429.1    KF649617    AHB86601.2    KY921811    ART29400.1    KA648138    AFP62767.1    EDV36666.1    KPU76342.1    KPU76343.1    KPU76341.1    GBXI01001975    JAD12317.1    GAMC01015360    GAMC01015356    JAB91195.1    GBXI01012277    JAD02015.1    KA646326    AFP60955.1    GAMC01015359    GAMC01015357    JAB91198.1    KRG00258.1    GANO01003209    JAB56662.1    EDW85613.2    GAMC01015358    JAB91197.1    KQ980262    KYN17063.1    GDAI01001512    JAI16091.1    AJWK01006821    AJWK01006822    KT981954    AMZ04830.1    CH933808    EDW09447.2    KF048097    AHI85748.1    KRG04671.1    KRG04672.1    EDX08404.1    KMY96071.1    KMY96073.1    KMY96074.1    KMY96076.1    KMY96072.1    GBHO01020826    GBRD01012356    JAG22778.1    JAG53468.1    EDW56983.1    KF048093    AHI85744.1    KRG04670.1    KMY96075.1    KF048094    AHI85745.1    GDHC01002656    JAQ15973.1    GFDG01003235    JAV15564.1    GFDG01002898    JAV15901.1    KF048096    AHI85747.1    GDHC01021942    JAP96686.1    ATLV01020915    KE525310    KFB45906.1    FJ489681    ACT34033.1    KF048095    AHI85746.1   
Pfam
PF00230   MIP
Interpro
IPR034294   Aquaporin_transptr        + More
IPR022357   MIP_CS       
IPR000425   MIP       
IPR023271   Aquaporin-like       
SUPFAM
SSF81338   SSF81338       
Gene 3D
PDB
1SOR     E-value=4.47353e-13,     Score=178

Ontologies

Topology

Length:
259
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
132.65767
Exp number, first 60 AAs:
29.40885
Total prob of N-in:
0.79971
POSSIBLE N-term signal
sequence
inside
1  -  19
TMhelix
20  -  42
outside
43  -  56
TMhelix
57  -  76
inside
77  -  95
TMhelix
96  -  118
outside
119  -  137
TMhelix
138  -  160
inside
161  -  171
TMhelix
172  -  194
outside
195  -  213
TMhelix
214  -  236
inside
237  -  259
 
 

Population Genetic Test Statistics

Pi
210.540008
Theta
205.346882
Tajima's D
0.060276
CLR
0.668995
CSRT
0.385980700964952
Interpretation
Uncertain
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