Silkworm Genome Informatics Database

Gene

KWMTBOMO05386 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002552

Annotation

PREDICTED:_UPF0396_protein_CG6066_[Papilio_xuthus]

Location

Bomo_Chr9(+):16578904-16581885 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.529

CDS

ATGGGTAGTGATCGCCACCACAGTCCTGAGCGGTTTCGCAGTAGGAGTCACGAGAGACGTCGCAGTCGTGATCGTCGTGATCGGAGTAAAGATCAAAGGAGAAACTGTAGTAGAGAGAGAAGTAAGGATAGAACAGAAAGGCATAGAGACAAGTACAAAGAACCAGAGAGACCGCGTAGAGATTATGACAGAGGGAAGAGTTCATATAGAGAGCATAATGGAGGAGGGCTTGGTGGAGGTCTTGGTGGTGGTCCTGGACCCAGAGGTCGGTATAAACCTCAGGAAGAAGAATTTTTGGATGCAAGGCGAGAGGAGCGAGAACGAATAGGCACACTTGGAGTTTCAGCTATATGGGGCAAGTCACCCACAAGGCCTGATGATACAGAAGATGAACAACCTACAAAGCAAGACAGTTCAGATCACAAACATAAAAAAAAGAGCAAGAAATCAAAAGATTCCAAAGACAACACAAAGGTAAAAAAACTCAAAAAAAAGCTCAAAAAGATGAAAAAGGCTCGAAAGAAAGCTAAAAAAAAATCAAAAGGTTCCAGCAGTGACTCTAGTACAAGTGAAGAAGAGATATGGGTGGAAAAAGGAAAAGAGCATGAAGTTCAACAGGCACAATCAGAACTATGTAAAGACAATGAAGAATTATCTTCGGAGATCATTGGTCCAGAGGCTCGTGCGATCGGCAGTGGAGCTCTCAGTGTTAGGGAGCTTGGTGGTGCTCTACTACCTGGAGAAGGTGCTGCCATGGCTGCTTTTGTGGCAGACGGAAAGAGAATTCCACGCAGAGGAGAAATTGGACTTACATCTGATGAAATTGCCTCCTATGAAGCTGTTGGATATGTCATGAGTGGGAGCAGACATCGACGCATGGAAGCAGTACGTATCCGCAAAGAGAACCAGATCTACTCGGCTGATGAGAAGCGCGCCCTCGCCGCATTTAGCAAGGACGAAAGGAACAAACGGGAAAACGCTATCCTTAGCCAGTTTAGAGATGTCCTCAAAGCCAGACAAAAACGAGAAACTTAG

Protein

MGSDRHHSPERFRSRSHERRRSRDRRDRSKDQRRNCSRERSKDRTERHRDKYKEPERPRRDYDRGKSSYREHNGGGLGGGLGGGPGPRGRYKPQEEEFLDARREERERIGTLGVSAIWGKSPTRPDDTEDEQPTKQDSSDHKHKKKSKKSKDSKDNTKVKKLKKKLKKMKKARKKAKKKSKGSSSDSSTSEEEIWVEKGKEHEVQQAQSELCKDNEELSSEIIGPEARAIGSGALSVRELGGALLPGEGAAMAAFVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKARQKRET

Uniprot

H9IZ67 A0A2W1B478 A0A2H1WEB3 A0A2A4K8Y8 A0A212EWE2 A0A224XFJ0 + More
A0A232EQ52 A0A1B0D2L5 A0A369SGY8 N6U559

Pubmed

19121390 28756777 22118469 28648823 30042472 23537049 + More

EMBL

BABH01011263 BABH01011264 BABH01011265 BABH01011266 BABH01011267 BABH01011268 + More
BABH01011269 KZ150352 PZC71252.1 ODYU01007770 SOQ50824.1 NWSH01000037 PCG80388.1 AGBW02012018 OWR45791.1 GFTR01005180 JAW11246.1 NNAY01002834 OXU20471.1 AJVK01022940 AJVK01022941 NOWV01000011 RDD46069.1 APGK01042227 KB741002 ENN75776.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000215335 UP000092462 UP000253843 + More
UP000019118

PRIDE

H9IZ67

Pfam

PF06047 Nkap_C + More
PF00400 WD40

Interpro

IPR039795   LTN1/Rkr1        + More
IPR016024   ARM-type_fold
IPR009269   NKAP_C
IPR040466   NKAP
IPR037352   Polycomb_EED
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR001680   WD40_repeat
IPR017986   WD40_repeat_dom
IPR036322   WD40_repeat_dom_sf
IPR019775   WD40_repeat_CS

SUPFAM

SSF48371 SSF48371 + More
SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

H9IZ67 A0A2W1B478 A0A2H1WEB3 A0A2A4K8Y8 A0A212EWE2 A0A224XFJ0 + More
A0A232EQ52 A0A1B0D2L5 A0A369SGY8 N6U559

PDB

6QDV E-value=3.43125e-05, Score=112

KEGG

101743278 no KO assigned | (RefSeq) UPF0396 protein CG6066

GO

GO:0045892 GO:0007219 GO:0003682 GO:0016571 GO:0035098

PANTHER

PTHR12389 PTHR13087 PTHR10253:SF5

Length:

344

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02347

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01981

outside

1 - 344

Pi

216.841052

Theta

175.638033

Tajima's D

0.543741

CLR

0.630433

CSRT

0.525473726313684

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics