Silkworm Genome Informatics Database

Gene

KWMTBOMO05384 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002552

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_listerin_[Bombyx_mori]

Location

Bomo_Chr9(+):16552004-16572586 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.231

CDS

ATGGGTGGTAATTCTAAACAAAGCCAAAGAACCAAAAATAACGTCCGTCCATCCAGCAGTGGGCGCAGTGCAGAACTCCTAAGCAATGTCAAGCTGGAATCAGGTCTAGTGAGCATTGCAGGAGGAAAAGTTCTTCCAGCACTGTTTCCAACACTTACAGTTGCTACTATAGACCAGGAAATTAGTCCAGAATTCCAAATATGCATAAAAAAGTTGAACAAAAAGGATCCTATTACAAAGACAAAGGGACTACAGGAAATGTTGGAAACCATAAACAATAGTAAAGTTGATGATGTCATCACAATTCTGCCAAGCTGGGCACATTTCTATAAAATACTTGCCATTGACCCAGACAGGAAAGTGCGAGAGTATACACAGTTATGCCACAGCAGCGTGGTGCGCGCGTGCGGGCGGCGGCTGGCCCCGCGGCTGCGGCAGCTGGTGCCGGCGTGGCTGCAGGCGCGGCACGACGAGCACGGCCCGGCGCAGGCGCACGCCAGGACCTCGCTCGCTAGTACGTTCCCCGATGCCAAGCTACCGGAAGTTTTAGCATTTTGTAAGACAGAAGTTATGACCCATTTCCTCGATAATCTCATCGGCACCGGTGAAGCCAGCATCTCCAAAAAAGCAGACAGCCCAGAAGACAAGGAGCAGCAAGTGACCCGCCTCATCAGCAGCTCGCTCCTCGGCCTGGAGTACTTCGTCCGGCAGCTGCCCGCCCAGCACGACGCCTGGCTGTGGGCCCAGCTGTCCGCCCTGCTGCACGCCGCCGCCTTCTGGAAGCTGGCGGCGCACTCCTCGCCGCGGATACGCGCGGGCTGGGCGGGCGCGGTGGGGCGCCTCGTGCAGCGGTTCCACTCCACGTTCGGTGACCAGTTCGGCGCCAAGACCTTTCGCGTCTTGCTCGAAAGGACCCAGGACACCGAGCTGTTGGTGGTGGCGCCGCTGTGGACCTGTCTGCTGCTCTACACGCACAGCGTGCAGGACTGGTGTGAACATTTGGAGAACAAGGAATTGCTGCTTAAAAGAATGCTCGAGTTATTAGAAAACGGGGGGCGCGGCGACGCCGGCCTGCTGCGCGCCGTGCTGCTGCCGCTGCTGCCGCGCCTGCCGCGGGACCTGCTCACCAAACACTTCTACGAGCAATTCTTCGACGCCATCTTTGTGGGGTTAGAAAAGAAAAACATATTAAGTTCGAAGAGCGAGAGGCAGTCCTGGTTGAGCGGCCTGGCTGAGGCTCTGCGCCACCTGGCGCGGCAGGACGACGACTTCGTGCTCGAGGTCGTCACGTCGGTGCACCGCGCGTGGCTGCGGCGCGTGCTGGCGCCGCGCAGCGACCAGCGCCTCATGCACGAACTCATCAAATGTTCGGCCAGCAATATGGCTGCTTGCGTCAAATTTTGGCACCAGCAGTCTGAAGACAAATACGACCAGCTTATACGGAATTTCTGGCAAAACGTGAACTTCACGCTTTTGAGTCAAATCGAAACGTTGTCCGATAACACCTCCGACACCGCCAGCGCGACGGCCGGCCACGTGCTGCTCGTCCAGACTCTGAAGACGTCGCTACTAAATGAACCCAAAAAGCAGCGAAGCATCAAGTTCGAAATGGACCGTGACGAGATCGCGCCGGAGCCCGCCACCCCGGAGTGGAGTCCCGCGCCCGACCCGGCCGCCGCGCTCCGGTTCCGGCGCGACCTGGACGACGCCGTGCAGAGGCTGGTGGCGCGGTACTTCGAGCTCGTGGGCGGCAGCTCGCACTGCGAGGCGGTGCTGGCGGCGCTGGCGACCCTGCTGCAGGAGTGGGAGGGCGGCGTGCGGGCGGCGGGCGCGGCCGCGCTGTACCGCGCGCTGCTGCGCCCGCGCCTGCCCGCCTCCCGCGCCGCGCTGCTGCTCGCCTTCCGCCTGCTGCCCCACATGGACGCGCCCGAGCGGGACCGAGTGTTCGACTCCTTCGACCAGCTGACGGGTGACTGCGAGGAGTGGTGCATCGAGTACAGCGCCGCCGCCGCGTGGTGCAGCACCAGCGCCGCCCGCTTCCTCCGCTCCCCCGCCCGCACCCCCGCCCTGCTCCGCGCGCCGCACCTGCTGACGGCGTGCCTCGCGCACGAAATACTAATCAGCAAAGAAGCAGTCTCGGAAATCATTGACGTGATCAACAAGACCCTCGCCGACCCCGACTCTCCCGAGCTGGAGCTCCGCAGCAGGATGGGCGCTCAGCTGGCCACCACCTTGCCCCAGGACTACCACGATCAGAACTTTTCGCGGCTGCTCGTCAACCTGTTCCATCTGAACGTTCTTGTGCCGCTGGGAGACGGCAGACTGTCGGCGGACACGTGGCACGAAGTCCGTTCTTCCTGGCAAGACGGGATCGGTGCACTGGTTCCTGCTGCAAGGAAAATAATCTATAAAGAAATCAATGACTACATCATAGACACGCTGTTCACAGAAATCCGACCCCTGGAGGCGGGGCGGGTCGAGAGCATCACCTCGCTGTGCCCGCTCGTGCTGAGCAAGGACGCGTCGCCGCCGGAGCTGCGTGACGTCACGGAGTTCTCGCGGGCGCTGCTGGGGGGCGCGGGGGGCGCGGCCCGCACGTGCGCCGTGCGCCACGACTGCATCCAGGGCAACTTCAACTGCCCCTTCAGGGACGACCCCCACATGAAGACGATCATCGACGAGGCCGACGGCGAAGCGACCGAGCCGGACGAGAGCGACCTTACGGTCTATGTGAATAAGTGCGTTTTTCGCTCGCTGTACCTGAAAGCTATTTTGCTGCGCGAGACGGAGGACGAGAGCGGCGACGCGCAGCGCTGGGGCTCCCTGCTGCTCCGGGACGACTACTTCCTGCTCGAGTTCTGCCAGCTGCTGCACGACCACATGGTGCTGTGCACGCTGGACGAGGCCTATGCGTTCTCGCCCCTGCACGAGATAGTGGGCGCGGCCAGACGCACAACGGACGCCGTGGTGCTGTCCACGGTCCGCGGCACGGAGCGCCCGGCCCGGCGCCGCGTGCTGGCCGGCCTGGCGCAGCGGGCCGCCGCCTGCGGGTACTACTGGGCCAAGGCTCGGAGATACTTCGAGCTCAACGTAGACCCCGACGACCTGGAGGCGGAGAATCCTTTCGACACGTCGAACCTGGATCTCGAGAAGATGGCGGAAATCGTAACGGGGAACGGGTACTTCCACAGTCTGCAGGCGAGCCTGCGCGGGCGCGAGGGCGCGGCGGGCGAGGGCGCGGAGGTGGCGGGTGAGGGCGCGGGGGCGGAGGGCGCGGGGGCGGCGGGTGAGGGCGCGGAGGGCTGGGCGCGCGTGCTGTACCTGGTGATGGTGCGCAGCGTGTACGCGGCTCACGGCGACGAGCCCGGGGTGCTGGACGCGCGCTTCCTGCAGGAGCTGGCGCGCTGCGACTCCGGCTGCCGCCTCGACGTCATCATCGACCTGTACTACCGGCACAACCACGTCATGCTCTACGACAGGGATATCCGGTCGGCGAGTTGGGCGCACGTGCTGAGCAACGCGGCCGTGTGCGAGTGTCTGCGGGCACAGCTCGTGGGGCGCGGCCGGGCCGCCTCCGCCGCCGTCTGGGACTTCCTCTGCATCACGCTCTGCTCGCTGCTCTCCTCGCTGCAGCTCTCCAAGGCGCACTGGGGCTCCACCAAGTACGCGCTGCTGGCGCGGGCCGTGTTGCGGCTCTACGTCGCGGCGGCGAGGGCGGTGGACGCGGCGGGGGGCGTGGTGGGGGATAGGGCGGGGGGCGTGGTGGGGGACACGGCGGGAGGCGTAACGGGGGACGAAGTGGCGGAGGCGGGGGCGGGGGCGGCGCGCGCGGCGGAGTGGCGGGACGTGTTCGCGCCGGACCTGCACGCCAACCTCTTCGCGCTGCTGACGCACGTGCTGGACTCCCACCACGCGCCGGTCAAGTCCACTCACGTGTCCACCGTCGAGGAGCTGATGCTCTGCACCAAACACATGGATTGGAACCTGTTGCCCAAGGAGCAGCAGGTGAACACGTTCGCACTGAGCCGGCTGGTGCGCGCGTGCTGCGGCGGGCTGGCGGGCCCGCACCGCGCGCACCAGCACCTGGCCGCCTGCGTGCTGGAGCTGCTCGTCGAGCCGCTGGTGCTGGAGGACGTCGGCAAGCTGTCCATGTGGAGCGAGTCCTCCGACGAGGAGAAGGAGCAGCACGAGCGGCCGCAGCTCTCGCTGGAGTACTTCCACGAGGACTTCGTGCAGCTGACGGACGCGGTGGAGGCCGCGCTCGCACCATACACGGTGGGCGAGGCGGTGTGCGGCGCGGCGGGGTGCGGCGCGGCGGGCATGTCGGCGCGGGAGCGCGGCGCGTGCCTGGGCTGGCTGCTGATGGCCGACAGCCTGCACCGACAGTGCCGCGTCGCTAAGGGGGACCTGAAGCACTACTACATCCACATATACAAAGACAAGGAGTACGGCGTCCCCCTGCTGGAGGGCAGTCTGCGGCTGCTGCCGGAGGAGCTGCTGGCGCACGCGCTGGGCAACAAGCCGCTGCCGCCGCAGTACGCCGCGCACTTCCACGGCACGGCGCCGCGCTCGCTGCGCCGCCCGCCCGCCGACGAGCTGGCGCGGCTGGCGTGCGCGTGCGTGCGCGCGGCGGTGTGCGGCGCGGGCTGCGGCGCGGCGCGGGCGTGGCGCAGTGCGGCCCCGCAGCGCGCCGCAAGACTGTTCGACGCCGTGCTGGCCGCCTACGTCACGCCGCTCGCCGTGCGGGACCAGCTGCTCGCCGTGCACGAACGGGCCAACGAAATCGAAAACGCACAGATCCAAGTGCTGTGGTCGTCTCAGGAAGTGTCGTGCGTGTACCGCGTGGAGGGGCGCGGCGTGGAGCTGCGCGTGCAGCTGGCGCGCGACCACCCCGTGGGCGCCCCCCGCGTCACCCCGCCGCCCCCCGGCTCGCCCGGCGCCAACACGCACTGGATCTCCGTGTACCTGGCCTACCAGGACGGCACGGTGCTGAGCGCGCTGCGGCAGTGGACGCGCGCGGCGGGCTCGCGCGTGCAGCGGGCCGCCGTGTGCTACATCTGCTACTGCCGCCTGCAGCCCGCCGCCGGCACGCTGCCCCGCGCCGCGTGCCGCCAGTGCAAGAACAAGTTCCACAAGGAGTGTCTGCGCAAGTGGTTCTCGACGAGCAACAAGTCCAACTGTCCGCTGTGCAGGGCGTCCTTCTAG

Protein

MGGNSKQSQRTKNNVRPSSSGRSAELLSNVKLESGLVSIAGGKVLPALFPTLTVATIDQEISPEFQICIKKLNKKDPITKTKGLQEMLETINNSKVDDVITILPSWAHFYKILAIDPDRKVREYTQLCHSSVVRACGRRLAPRLRQLVPAWLQARHDEHGPAQAHARTSLASTFPDAKLPEVLAFCKTEVMTHFLDNLIGTGEASISKKADSPEDKEQQVTRLISSSLLGLEYFVRQLPAQHDAWLWAQLSALLHAAAFWKLAAHSSPRIRAGWAGAVGRLVQRFHSTFGDQFGAKTFRVLLERTQDTELLVVAPLWTCLLLYTHSVQDWCEHLENKELLLKRMLELLENGGRGDAGLLRAVLLPLLPRLPRDLLTKHFYEQFFDAIFVGLEKKNILSSKSERQSWLSGLAEALRHLARQDDDFVLEVVTSVHRAWLRRVLAPRSDQRLMHELIKCSASNMAACVKFWHQQSEDKYDQLIRNFWQNVNFTLLSQIETLSDNTSDTASATAGHVLLVQTLKTSLLNEPKKQRSIKFEMDRDEIAPEPATPEWSPAPDPAAALRFRRDLDDAVQRLVARYFELVGGSSHCEAVLAALATLLQEWEGGVRAAGAAALYRALLRPRLPASRAALLLAFRLLPHMDAPERDRVFDSFDQLTGDCEEWCIEYSAAAAWCSTSAARFLRSPARTPALLRAPHLLTACLAHEILISKEAVSEIIDVINKTLADPDSPELELRSRMGAQLATTLPQDYHDQNFSRLLVNLFHLNVLVPLGDGRLSADTWHEVRSSWQDGIGALVPAARKIIYKEINDYIIDTLFTEIRPLEAGRVESITSLCPLVLSKDASPPELRDVTEFSRALLGGAGGAARTCAVRHDCIQGNFNCPFRDDPHMKTIIDEADGEATEPDESDLTVYVNKCVFRSLYLKAILLRETEDESGDAQRWGSLLLRDDYFLLEFCQLLHDHMVLCTLDEAYAFSPLHEIVGAARRTTDAVVLSTVRGTERPARRRVLAGLAQRAAACGYYWAKARRYFELNVDPDDLEAENPFDTSNLDLEKMAEIVTGNGYFHSLQASLRGREGAAGEGAEVAGEGAGAEGAGAAGEGAEGWARVLYLVMVRSVYAAHGDEPGVLDARFLQELARCDSGCRLDVIIDLYYRHNHVMLYDRDIRSASWAHVLSNAAVCECLRAQLVGRGRAASAAVWDFLCITLCSLLSSLQLSKAHWGSTKYALLARAVLRLYVAAARAVDAAGGVVGDRAGGVVGDTAGGVTGDEVAEAGAGAARAAEWRDVFAPDLHANLFALLTHVLDSHHAPVKSTHVSTVEELMLCTKHMDWNLLPKEQQVNTFALSRLVRACCGGLAGPHRAHQHLAACVLELLVEPLVLEDVGKLSMWSESSDEEKEQHERPQLSLEYFHEDFVQLTDAVEAALAPYTVGEAVCGAAGCGAAGMSARERGACLGWLLMADSLHRQCRVAKGDLKHYYIHIYKDKEYGVPLLEGSLRLLPEELLAHALGNKPLPPQYAAHFHGTAPRSLRRPPADELARLACACVRAAVCGAGCGAARAWRSAAPQRAARLFDAVLAAYVTPLAVRDQLLAVHERANEIENAQIQVLWSSQEVSCVYRVEGRGVELRVQLARDHPVGAPRVTPPPPGSPGANTHWISVYLAYQDGTVLSALRQWTRAAGSRVQRAAVCYICYCRLQPAAGTLPRAACRQCKNKFHKECLRKWFSTSNKSNCPLCRASF

Uniprot

NA

ProteinModelPortal

NA

PDB

3J92 E-value=3.72916e-43, Score=446

KEGG

101739087 K22377 E3 ubiquitin-protein ligase listerin [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase lis

GO

GO:0005515 GO:0008270 GO:0005488 GO:0003677 GO:0003676 GO:0006511 GO:0005525 GO:0016491 GO:0003824

Length:

1734

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35111

Exp number, first 60 AAs:

0.2913

Total prob of N-in:

0.01448

outside

1 - 1734

Pi

296.16839

Theta

216.744147

Tajima's D

1.078894

CLR

0.002143

CSRT

0.684065796710165

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics