Gene

KWMTBOMO05381

Pre Gene Modal

BGIBMGA007053

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(-):16201383-16205003      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.995

CDS

ATGCATAGTCCATGTGCAGATTGTGGCAGTGACCACCAACTACTTGTTGCAAAAGTTAAAATCCGTCTTAAGTCAATCAAACAGCAGAAACCCAGGAAGGTGGTGGACATATCGGGTCGAGCGCAGGAGTTGTTTGCCAATGCCATTAAGGAGCGGTTGCGTGATTTTGCCGTAGATCCCTTCGACTCTGCAAATGTTACCTGGGAACAGTTGAAACAGGTAACCTTGCAGACAGCGAGCGAAGTCGTCGGAACACAAGCAATAGAACAACCTAAATCACCTTGGATGTCCGAAGAAACATGGTCAGCTATCGTCAGAAGAAAAGCCCGAAAGGAGGATGGTCTTACGACTGACGCAGATAAGCATGAGTACAGACTGCTGCATCATGAAGTCCAAAGACTTTGCAGACGTGACAGAGATGCCTATATAAGTGCTGTCTGCGACGACATTCAAAGGGATTCTGAACGCATGCATTCTAAGGACATGTTCCGCAGAGTGAAGCTGTTGGCCAAAGAGTACAAGCTGAAAACCTGGACTATTGAGGACGACCGTGGTAACCTCATCATTGACAGGCAGGCTGCGCTAGACAGATGGAGGAGATACAGCGAACAGCTATATTGCGAAAAGGGCTGCAATGATATTGAAGGAAGGGTGGACTATAACCAACATGAGCCAGATATCCTTCTTCAAGAAGTTGAGGCAGCAATCAATAGGCTGAAGCAAAAAGCATGCGGAAGGGACAGCATAACTTGA

Protein

MHSPCADCGSDHQLLVAKVKIRLKSIKQQKPRKVVDISGRAQELFANAIKERLRDFAVDPFDSANVTWEQLKQVTLQTASEVVGTQAIEQPKSPWMSEETWSAIVRRKARKEDGLTTDADKHEYRLLHHEVQRLCRRDRDAYISAVCDDIQRDSERMHSKDMFRRVKLLAKEYKLKTWTIEDDRGNLIIDRQAALDRWRRYSEQLYCEKGCNDIEGRVDYNQHEPDILLQEVEAAINRLKQKACGRDSIT

Uniprot

D7F174   H9JC08   H9J2M7   D5LB39   A0A2W1BGD9   D7F172   + More
D7F168   D7F163   A0A2W1BNH4   D7F161   A0A0J7L4A4   A0A2W1BHL0   A0A0J7KGF7   A0A2H1W4B8   A0A2G8JL44   D7F175   A0A2A4JU75   W5NH99   A0A3S3P648   D7F162   D7F167   A0A023GD30   A0A0L7L141   A0A3Q1MC12   A0A2A4JXP9   H9JCQ5   A0A3Q1LU03   A0A023G4L3   A0A3Q1NNC3   A0A3Q1MS18   A0A2H1V4P4   A0A2G8JV65   A0A3Q1M1R5   A0A3Q1NNM3   A0A3Q1MMZ0   W5MT28   A0A3Q1M0B3   A0A3Q1MVK1   A0A3Q1NFT8   A0A3Q1MTP7   A0A2J7RGX9   A0A3Q1MD43   A0A085NA39   A0A0B1PP52   A0A3Q1M112   A0A2V9X8L4   A0A2J7R7C2   A0A076N1B6   A0A1S4ELA5   A0A2S2NQ16   A0A2J7Q6D5   A0A2J7QCR1   A0A2J7RL19   A0A2J7R2Y0   A0A2J7QEY3   A0A2J7PCW0   A0A3Q1MSH0   A0A2J7QPT5   A0A2J7Q4I0   A0A2J7PWT0   A0A2J7PTB8   A0A2J7QLQ1   A0A2J7PFC5   A0A2J7Q7C6   A0A2J7PSI0   A0A2J7PMY4   A0A2J7PSH5   A0A2J7Q6T5   A0A2J7QCG2   A0A2J7Q3T8   A0A2J7PHX9   A0A2J7Q6P7   A0A2J7PX03   A0A2J7QEJ0   A0A2J7QGT4   A0A2J7R4R4   A0A2J7QUN7   A0A2J7PHM9   A0A2J7QGJ2   A0A2J7RGX2   A0A2J7RJY3   A0A2J7QGX8   A0A2J7QMC5   A0A2J7PT27   A0A2J7QKB0   A0A2J7QJJ9   A0A2J7Q0C6   A0A2J7PBF1  

Pubmed

20470440    19121390    28756777    29023486    26227816    19393038    + More
24929829   

EMBL

FJ265559    ADI61827.1    BABH01014646    BABH01014647    BABH01034460    BABH01034461    + More
BABH01034462    GU815090    ADF18553.1    KZ150203    PZC72267.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    FJ265548    ADI61816.1    KZ150025    PZC74827.1    FJ265546    ADI61814.1    LBMM01000801    KMQ97461.1    KZ150087    PZC73751.1    LBMM01007694    KMQ89503.1    ODYU01006118    SOQ47682.1    MRZV01001667    PIK36482.1    FJ265560    ADI61828.1    NWSH01000575    PCG75551.1    AHAT01015780    NCKU01004395    RWS06003.1    FJ265547    ADI61815.1    FJ265552    ADI61820.1    GBBM01003639    JAC31779.1    JTDY01003694    KOB69135.1    NWSH01000469    PCG76200.1    BABH01034706    GBBM01006247    JAC29171.1    ODYU01000634    SOQ35746.1    MRZV01001216    PIK39651.1    AHAT01016400    NEVH01003750    PNF40086.1    KL367526    KFD66335.1    KN538403    KHJ42451.1    QIAP01000240    PYX61602.1    NEVH01006736    PNF36722.1    KF881087    AIJ27486.1    GGMR01006433    MBY19052.1    NEVH01017533    PNF24153.1    NEVH01016127    PNF26367.1    NEVH01002700    PNF41535.1    NEVH01007824    PNF35184.1    NEVH01015305    PNF27148.1    NEVH01026403    PNF14170.1    NEVH01012087    PNF30599.1    NEVH01018380    PNF23492.1    NEVH01020868    PNF20797.1    NEVH01021610    PNF19569.1    NEVH01013243    PNF29503.1    NEVH01025668    PNF15041.1    NEVH01017443    PNF24485.1    NEVH01021928    PNF19298.1    NEVH01023960    PNF17698.1    NEVH01021931    PNF19256.1    NEVH01017452    PNF24293.1    NEVH01016289    PNF26277.1    NEVH01019064    PNF23230.1    NEVH01025130    PNF15934.1    NEVH01017460    PNF24248.1    NEVH01020865    PNF20863.1    NEVH01015309    PNF27009.1    NEVH01014359    PNF27789.1    NEVH01007402    PNF35815.1    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01025135    PNF15828.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    PNF40091.1    NEVH01002982    PNF41147.1    PNF27813.1    NEVH01013215    PNF29703.1    NEVH01021921    PNF19488.1    NEVH01013275    PNF29009.1    NEVH01013553    PNF28765.1    NEVH01019971    PNF22037.1    NEVH01027104    PNF13657.1   

Proteomes

UP000005204    UP000036403    UP000230750    UP000218220    UP000018468    UP000285301    + More
UP000037510    UP000009136    UP000235965    UP000247801    UP000079169   

PRIDE

D7F174    H9JC08    H9J2M7    D5LB39    D7F172    D7F168    + More
D7F163    D7F161    D7F175    D7F162    D7F167    H9JCQ5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR002138   Pept_C14_p10       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F174   H9JC08   H9J2M7   D5LB39   A0A2W1BGD9   D7F172   + More
D7F168   D7F163   A0A2W1BNH4   D7F161   A0A0J7L4A4   A0A2W1BHL0   A0A0J7KGF7   A0A2H1W4B8   A0A2G8JL44   D7F175   A0A2A4JU75   W5NH99   A0A3S3P648   D7F162   D7F167   A0A023GD30   A0A0L7L141   A0A3Q1MC12   A0A2A4JXP9   H9JCQ5   A0A3Q1LU03   A0A023G4L3   A0A3Q1NNC3   A0A3Q1MS18   A0A2H1V4P4   A0A2G8JV65   A0A3Q1M1R5   A0A3Q1NNM3   A0A3Q1MMZ0   W5MT28   A0A3Q1M0B3   A0A3Q1MVK1   A0A3Q1NFT8   A0A3Q1MTP7   A0A2J7RGX9   A0A3Q1MD43   A0A085NA39   A0A0B1PP52   A0A3Q1M112   A0A2V9X8L4   A0A2J7R7C2   A0A076N1B6   A0A1S4ELA5   A0A2S2NQ16   A0A2J7Q6D5   A0A2J7QCR1   A0A2J7RL19   A0A2J7R2Y0   A0A2J7QEY3   A0A2J7PCW0   A0A3Q1MSH0   A0A2J7QPT5   A0A2J7Q4I0   A0A2J7PWT0   A0A2J7PTB8   A0A2J7QLQ1   A0A2J7PFC5   A0A2J7Q7C6   A0A2J7PSI0   A0A2J7PMY4   A0A2J7PSH5   A0A2J7Q6T5   A0A2J7QCG2   A0A2J7Q3T8   A0A2J7PHX9   A0A2J7Q6P7   A0A2J7PX03   A0A2J7QEJ0   A0A2J7QGT4   A0A2J7R4R4   A0A2J7QUN7   A0A2J7PHM9   A0A2J7QGJ2   A0A2J7RGX2   A0A2J7RJY3   A0A2J7QGX8   A0A2J7QMC5   A0A2J7PT27   A0A2J7QKB0   A0A2J7QJJ9   A0A2J7Q0C6   A0A2J7PBF1  

KEGG

101741149    no KO assigned | (RefSeq) uncharacterized LOC101741149

GO

GO:0003964   GO:0004519   GO:0004197   GO:0016021   GO:0004527  

PANTHER

PTHR23227  

Length:

250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04136

outside

1  -  250

 

 

Pi

303.321739

Theta

209.103173

Tajima's D

3.720234

CLR

23.248347

CSRT

0.9966001699915

Interpretation

Uncertain