SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05373  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002547
Annotation
Neurexin-4_[Papilio_xuthus]
Location
Bomo_Chr9(+):15741895-15751263      View in EpiBrowser
Location in the cell
Cytoplasmic   Reliability : 1.597 Nuclear   Reliability : 1.597
 

Sequence

CDS
ATGGCCAACAAAGGCAATGTGCGATGGGCATTTAATACACGTGAGTGGCAGCCAGCGAAAGAAGAAATATTATTGGCTTCAAGTTATATACAAAATGAAGAAAAACAGAGGATATCCAGATTTGTCTTCCAGAACGATGCTAAATCGTCACTTATTGGAAGACTCATGCTAAGAAAGTATGTACAGACCTCAACATCGACTCCTTATGATGAGATAAAATTTGGTAGAGATGACCGCGGGAAACCGTTTTTGCTTAATCCTATTGATTTGAAGATAAGTTTCAATGTTTCTCACCAAGGAGACTTTGTGGTTCTAGCTGGATGCAAAGATTGGAATGTGGGAATTGACGTCATGAAAATTGAGCCACCTGTGAACAAGAATATCCCAGAGTTCTTTCGGATCATGGCCAGGCAGTTCTCACCACGAGAATGGTCGACTATACGCAGTTTTCCAACTGAGTTAGAGCAGATTGCTTGTTTTTACCGTATATGGTGCTTAAAAGAAAGTTACGTAAAGAATGTGGGGTTTGGTATAACTGTTCCTTTGGATGAAATCAGTTTTCAACTGAAGACTTTACATTTAGAAATGGACAAAATTGTTACTGATACTGTTCTCTATGAGAGGAATGTTTTGAAGGAGGATTGGATCTTTGAAGAGACATTACTCGATGAGAAGCATGCTGTAGCTGTGTCTTTGCAAAAGAAAGATAATTCAACAGATGCTCCAGTATGCTATAAGGTTTTGTCTTATCAAGAGCTGGTTGAGGAAGCCAAGTCTCTGTGTAGTACTGATGAAACATTTAGTACAAACGCTTGGACTGCTTCGGAGAGTGATTTCGATCAGCAACTGATTGTTGACTTTGGCAGTGTTAAGAACATAACCAGGATCGCAGTACAAGGTCGGGCTCATTCCCAAGAGTTTGTCCAGGAATACCATATCAGCTATGGATCGAATGGCCTAGATTACGTACAGTATAAAGCTCCTGGTGGTGAAGTGAAGATGTTTCACGGGAATCAAGACGGTGACACAGTGCGAAAAAACGAATTCGAAGTGCCTATAATAGCTCAATATTTGCGCATTAACCCGATGAGATGGCGGGACAAAATATCTATGAGAGTGGAAGTTTACGGTTGCGATTACGTCGCCGACACTCTGTACTTCAACGGGTCGTCGCTAATAAAAATGGACCTGCTCCGGGACCCGATATCGGCGTCCCGGGAAGTGATCCGGTTCCGGCTGAAGACGAGCACGGCGTCGGGCGCGCTGCTGTACTCGCGCGGCACGCAGGGCGACTACCTGGCGCTGCAGCTCAGGGACAACCGGCTCGTGCTCAACATTGATTTGGCGCCCAAGTGA
Protein
MANKGNVRWAFNTREWQPAKEEILLASSYIQNEEKQRISRFVFQNDAKSSLIGRLMLRKYVQTSTSTPYDEIKFGRDDRGKPFLLNPIDLKISFNVSHQGDFVVLAGCKDWNVGIDVMKIEPPVNKNIPEFFRIMARQFSPREWSTIRSFPTELEQIACFYRIWCLKESYVKNVGFGITVPLDEISFQLKTLHLEMDKIVTDTVLYERNVLKEDWIFEETLLDEKHAVAVSLQKKDNSTDAPVCYKVLSYQELVEEAKSLCSTDETFSTNAWTASESDFDQQLIVDFGSVKNITRIAVQGRAHSQEFVQEYHISYGSNGLDYVQYKAPGGEVKMFHGNQDGDTVRKNEFEVPIIAQYLRINPMRWRDKISMRVEVYGCDYVADTLYFNGSSLIKMDLLRDPISASREVIRFRLKTSTASGALLYSRGTQGDYLALQLRDNRLVLNIDLAPK

Summary

Uniprot
H9IZ62   A0A2H1WVR4   A0A194QKI5   A0A0L7L8R3   A0A182NH62   A0A182PH94   + More
A0A182ML99   U4TVZ4   A0A182X3K6   A0A182I3G4   A0A182KRI3   A0A182V8M3   A0A3R7MMB1   A0A164Z6T0   A0A1A9VNB0   A0A1A9XD78   A0A1B0FMI3   A0A1B0A758   A0A0L0BXM4   A0A182UA04   A0A182QNL2   A0A084WNH7   A0A182S005   A0A182JQX7   A0A182XZ17   A0A1A9UH91  
Pubmed
19121390    26354079    26227816    23537049    20966253    26108605    + More
24438588    25244985   
EMBL
BABH01011183    BABH01011184    BABH01011185    BABH01011186    ODYU01011424    SOQ57153.1    + More
KQ458714    KPJ05430.1    JTDY01002332    KOB71646.1    AXCM01004161    KB631644    ERL84947.1    APCN01000208    QCYY01003086    ROT65426.1    LRGB01000781    KZS16007.1    CCAG010014702    JRES01001180    KNC24750.1    AXCN02000889    AXCN02000890    ATLV01024605    KE525352    KFB51771.1   
Proteomes
UP000005204    UP000053268    UP000037510    UP000075884    UP000075885    UP000075883    + More
UP000030742    UP000076407    UP000075840    UP000075882    UP000075903    UP000283509    UP000076858    UP000078200    UP000092443    UP000092444    UP000092445    UP000037069    UP000075902    UP000075886    UP000030765    UP000075900    UP000075881    UP000076408   
PRIDE
H9IZ62   
Pfam
PF00008   EGF        + More
PF00754   F5_F8_type_C
PF02210   Laminin_G_2
PF01648   ACPS
Interpro
IPR000421   FA58C        + More
IPR013320   ConA-like_dom_sf       
IPR029831   Caspr2       
IPR008278   4-PPantetheinyl_Trfase_dom       
IPR037143   4-PPantetheinyl_Trfase_dom_sf       
IPR000742   EGF-like_dom       
IPR001791   Laminin_G       
IPR008979   Galactose-bd-like_sf       
IPR028872   Caspr1       
IPR003585   Neurexin-like       
SUPFAM
SSF49899   SSF49899        + More
SSF49785   SSF49785       
SSF56214   SSF56214       
Gene 3D
2.60.120.260     3.90.470.20    
CDD
cd00057  FA58C
ProteinModelPortal
H9IZ62   A0A2H1WVR4   A0A194QKI5   A0A0L7L8R3   A0A182NH62   A0A182PH94   + More
A0A182ML99   U4TVZ4   A0A182X3K6   A0A182I3G4   A0A182KRI3   A0A182V8M3   A0A3R7MMB1   A0A164Z6T0   A0A1A9VNB0   A0A1A9XD78   A0A1B0FMI3   A0A1B0A758   A0A0L0BXM4   A0A182UA04   A0A182QNL2   A0A084WNH7   A0A182S005   A0A182JQX7   A0A182XZ17   A0A1A9UH91  
PDB
2C43     E-value=1.18682e-51,     Score=514

Ontologies

KEGG
101742657    no KO assigned | (RefSeq) neurexin-4
GO
GO:0016021   GO:0000287   GO:0008897   GO:0007018   GO:0016020   GO:0003779   GO:0008270   GO:0006511   GO:0005525   GO:0016491   GO:0003824  
PANTHER
PTHR15036:SF33   PTHR15036:SF43  

Topology

Length:
451
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00898999999999998
Exp number, first 60 AAs:
8e-05
Total prob of N-in:
0.01765
outside
1  -  451
 
 

Population Genetic Test Statistics

Pi
243.080936
Theta
36.026817
Tajima's D
0.376756
CLR
1.76533
CSRT
0.481625918704065
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
23174119 -.TEGLLSYPEVCGK.- 100.00 4e-07
23174119 -.DSTLIMQLLR.- 100.00 4e-07
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