Gene

KWMTBOMO05371

Pre Gene Modal

BGIBMGA002546

Annotation

PREDICTED:_peptide_deformylase?_mitochondrial-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr9(+):15707915-15709421      View in EpiBrowser

Full name

Peptide deformylase      

Location in the cell

Mitochondrial   Reliability : 1.685

CDS

ATGAAAATAACAAGGAAAATATTAAACTGGTATGCTAGATTAAGTCCTAAACACGGAGTATCATTACCTCCATATAATCATGTTGTTCAAGTTGGTGATCCAACATTACGTAAAGTTTCCGAGCCGGTACCAATAGAAAATATCAAAACCAAAGAAATACAGACGCTTATACTGAAATTACGTTTCGTTATGAACAAATACAAGTCAGTAGGTATGTCGGCTCCACAAATTGGTGTAAATATGAGAATATTTGTGATGCAACTGAATCCATTGCAACTTGCTAATGTACCCCAAGCAATTGTTAAATCAAGGGGCATGGAAGTGATTCCGTTTACTGTATTTGTCAATCCCACATTGAAAGTTTTGAACTATAACAAAGTGATATTGTCGGAGGGCTGTGAAAGTGTACAAGGATATACTGCTGATGTACCTAGATATAAAGAAATACAAATTTCAGGATACAATGAAGATGGAAATCCCACATCCAACACTTATAGAGACTGGGCTGCGAGAGTAGCTCAGCATGAGATTGAGCACTTAGATGGCAAACTCTATGTGGATATAATGGACCGAAAGACGATGTCCTGTGTATGCTGGGAGGAAGTTAATTTATCGAAAGGAAAACTTGCTATACCGTTTTCGCCTGAATAA

Protein

MKITRKILNWYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVFVNPTLKVLNYNKVILSEGCESVQGYTADVPRYKEIQISGYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKLAIPFSPE

Description

Removes the formyl group from the N-terminal Met of newly synthesized proteins.

Catalytic Activity

H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]

Similarity

Belongs to the polypeptide deformylase family.

Feature

chain  Peptide deformylase

Uniprot

H9IZ61   A0A0L7K3Z8   A0A0L7LCS2   A0A2A4J7N4   A0A2H1V332   A0A194QIU2   + More
A0A0N1PHI8   A0A3S2PCF2   A0A212EUW3   A0A2M4AZ14   W5J735   A0A0K8TSH0   A0A182FSV1   A0A182IRX0   B4KD11   A0A1W4WYC2   B3LWH4   A0A0M3QXU2   A0A182NFZ9   A0A182SKK3   A0A1Y1KDG8   A0A182MI78   A0A182UM64   A0A182WUZ8   A0A182I8M3   A0A182RRU1   A0A182LAI1   A0A1W4VZ62   A0A182P2P8   B4PKR6   A0A182W141   B4HIR6   A0A182TD21   A0A182Q0Z8   Q7QFS8   B4GLS6   Q9VGY2   A0A1Q3FAP0   Q293Q5   A0A3B0JTR2   B4LZJ6   A0A084W786   B3P1L6   A0A182XX55   D6X4P8   B4JUW6   B0WV60   B4NAZ0   B4QV62   A0A1Y1KGL9   A0A182G4M9   A0A1A9WDV1   A0A1S4EVE6   A0A023ELV7   A0A1I8PH39   Q17PR2   A0A1J1HVD8   A0A1B6G2U2   A0A1A9XWV4   A0A0K8V9R6   A0A1B6H4U6   A0A293LML5   A0A034WSX3   W4XDN7   A0A1B6HR30   A0A1I8NID8   A0A1B6E7B0   A0A0P4WMV8   A0A0A1WZD3   A0A1B0ACX5   E9H2A8   A0A069DQT1   A0A023F2A0   A0A1W4VYY0   A0A1B0FE35   A0A336MUU5   A0A195CRX4   A0A1B0B2E8   A0A164XAB7   A0A0J7K813   A0A1B6LR49   A0A336KR72   Q4V5F8   A0A2J7RJ01   T1IFZ8   E2AB28   A0A1S3DJF6   A0A1L8DRT9   Q8INL3   A0A195BPF3   A0A3Q2DH33   B4QV61   A0A0U2T6T6   B4GLS5   A0A158NZF2   Q293Q6   B4HIR5   A0A2G9QEX1   A0A151ITD0   A0A0P4VPU8  

EC Number

3.5.1.88

Pubmed

19121390    26227816    26354079    22118469    20920257    23761445    + More
26369729    17994087    28004739    20966253    17550304    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    18057021    24438588    25244985    18362917    19820115    26483478    17510324    24945155    25348373    25315136    25830018    21292972    26334808    25474469    20798317    26621068    21347285    27129103   

EMBL

BABH01011178    JTDY01011199    KOB57385.1    JTDY01001630    KOB73303.1    NWSH01002504    + More
PCG68137.1    ODYU01000446    SOQ35231.1    KQ458714    KPJ05432.1    KQ460864    KPJ11809.1    RSAL01000103    RVE47418.1    AGBW02012297    OWR45247.1    GGFK01012696    MBW46017.1    ADMH02002125    ETN58675.1    GDAI01000520    JAI17083.1    CH933806    EDW13781.1    CH902617    EDV41568.1    CP012526    ALC46523.1    GEZM01087669    JAV58548.1    AXCM01001964    APCN01003089    CM000160    EDW96825.1    CH480815    EDW42713.1    AXCN02000343    AAAB01008844    EAA06035.4    CH479185    EDW38500.1    AE014297    BT015988    AAF54540.2    AAV36873.1    GFDL01010425    JAV24620.1    CM000070    EAL29159.1    OUUW01000008    SPP83792.1    CH940650    EDW67135.1    KRF83128.1    ATLV01021173    KE525314    KFB46080.1    CH954181    EDV49615.1    KQ971380    EEZ97665.1    CH916374    EDV91286.1    DS232119    EDS35399.1    CH964232    EDW80954.1    CM000364    EDX13468.1    GEZM01087672    JAV58546.1    JXUM01042548    KQ561329    KXJ78959.1    GAPW01003341    JAC10257.1    CH477190    EAT48689.1    CVRI01000019    CRK90454.1    GECZ01013009    JAS56760.1    GDHF01016688    JAI35626.1    GECZ01000076    JAS69693.1    GFWV01004361    MAA29091.1    GAKP01000296    JAC58656.1    AAGJ04150145    GECU01030631    JAS77075.1    GEDC01003503    JAS33795.1    GDRN01060426    JAI65367.1    GBXI01010442    JAD03850.1    GL732585    EFX74141.1    GBGD01002892    JAC85997.1    GBBI01003613    JAC15099.1    CCAG010018329    UFQT01002185    SSX32879.1    KQ977349    KYN03390.1    JXJN01007618    LRGB01001005    KZS14023.1    LBMM01012204    KMQ86351.1    GEBQ01013822    JAT26155.1    UFQS01000859    UFQT01000859    SSX07326.1    SSX27668.1    BT022698    AAY55114.1    NEVH01003009    PNF40818.1    ACPB03011443    GL438234    EFN69304.1    GFDF01004963    JAV09121.1    AAN13481.1    KQ976433    KYM87332.1    EDX13467.1    KT754454    ALS04288.1    EDW38499.1    ADTU01004571    EAL29158.1    EDW42712.1    KZ027616    PIO13613.1    KQ981018    KYN10259.1    GDKW01002086    JAI54509.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053268    UP000053240    UP000283053    + More
UP000007151    UP000000673    UP000069272    UP000075880    UP000009192    UP000192223    UP000007801    UP000092553    UP000075884    UP000075901    UP000075883    UP000075903    UP000076407    UP000075840    UP000075900    UP000075882    UP000192221    UP000075885    UP000002282    UP000075920    UP000001292    UP000075902    UP000075886    UP000007062    UP000008744    UP000000803    UP000001819    UP000268350    UP000008792    UP000030765    UP000008711    UP000076408    UP000007266    UP000001070    UP000002320    UP000007798    UP000000304    UP000069940    UP000249989    UP000091820    UP000095300    UP000008820    UP000183832    UP000092443    UP000007110    UP000095301    UP000092445    UP000000305    UP000092444    UP000078542    UP000092460    UP000076858    UP000036403    UP000235965    UP000015103    UP000000311    UP000079169    UP000078540    UP000265020    UP000005205    UP000078492   

PRIDE

H9IZ61    Q9VGY2    Q4V5F8    Q8INL3   

Pfam

PF01327   Pep_deformylase        + More
PF00096   zf-C2H2

Interpro

IPR036821   Peptide_deformylase_sf        + More
IPR023635   Peptide_deformylase       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF56420   SSF56420        + More
SSF57667   SSF57667       

Gene 3D

3.90.45.10    

CDD

cd00487  Pep_deformylase

ProteinModelPortal

H9IZ61   A0A0L7K3Z8   A0A0L7LCS2   A0A2A4J7N4   A0A2H1V332   A0A194QIU2   + More
A0A0N1PHI8   A0A3S2PCF2   A0A212EUW3   A0A2M4AZ14   W5J735   A0A0K8TSH0   A0A182FSV1   A0A182IRX0   B4KD11   A0A1W4WYC2   B3LWH4   A0A0M3QXU2   A0A182NFZ9   A0A182SKK3   A0A1Y1KDG8   A0A182MI78   A0A182UM64   A0A182WUZ8   A0A182I8M3   A0A182RRU1   A0A182LAI1   A0A1W4VZ62   A0A182P2P8   B4PKR6   A0A182W141   B4HIR6   A0A182TD21   A0A182Q0Z8   Q7QFS8   B4GLS6   Q9VGY2   A0A1Q3FAP0   Q293Q5   A0A3B0JTR2   B4LZJ6   A0A084W786   B3P1L6   A0A182XX55   D6X4P8   B4JUW6   B0WV60   B4NAZ0   B4QV62   A0A1Y1KGL9   A0A182G4M9   A0A1A9WDV1   A0A1S4EVE6   A0A023ELV7   A0A1I8PH39   Q17PR2   A0A1J1HVD8   A0A1B6G2U2   A0A1A9XWV4   A0A0K8V9R6   A0A1B6H4U6   A0A293LML5   A0A034WSX3   W4XDN7   A0A1B6HR30   A0A1I8NID8   A0A1B6E7B0   A0A0P4WMV8   A0A0A1WZD3   A0A1B0ACX5   E9H2A8   A0A069DQT1   A0A023F2A0   A0A1W4VYY0   A0A1B0FE35   A0A336MUU5   A0A195CRX4   A0A1B0B2E8   A0A164XAB7   A0A0J7K813   A0A1B6LR49   A0A336KR72   Q4V5F8   A0A2J7RJ01   T1IFZ8   E2AB28   A0A1S3DJF6   A0A1L8DRT9   Q8INL3   A0A195BPF3   A0A3Q2DH33   B4QV61   A0A0U2T6T6   B4GLS5   A0A158NZF2   Q293Q6   B4HIR5   A0A2G9QEX1   A0A151ITD0   A0A0P4VPU8  

PDB

3G5P     E-value=2.04962e-36,     Score=379

KEGG

101741594    K01462 peptide deformylase [EC:3.5.1.88] | (RefSeq) peptide deformylase, mitochondrial-like

GO

GO:0042586   GO:0046872   GO:0006412   GO:0031365   GO:0005739   GO:0043686   GO:0018206   GO:0003676   GO:0016021  

PANTHER

PTHR10458  

Length:

216

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14849

Exp number, first 60 AAs:

0.00244

Total prob of N-in:

0.23655

outside

1  -  216

 

 

Pi

177.47847

Theta

159.837141

Tajima's D

0.347067

CLR

0

CSRT

0.473226338683066

Interpretation

Uncertain