Gene

KWMTBOMO05367

Annotation

hypothetical_protein_M513_10814?_partial_[Trichuris_suis]

Location

Bomo_Chr9(-):15673000-15676884      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.086

CDS

ATGGCCAGTCAAGAAATACAGGAACAACTGCAACAACTCTTGGCTGCAAATGCAGCGCTACAAAAACAACTTGAAGGAAATGAGAGAGAAACAAAAGTTTGTAGAGTTACAGTCAAATTGCCTACATTTTGGGCTGACAAACCAGCTGTTTGGTTTGCTCAAATTGAAGCTCAATTCCAAATTGCCAATATTGTGACAGATACTACTAAATATAATTATGTTGTAGGTCACCTTGACCAAAGAATAGCTGGAGAGGTTGAAGACATAATAACAAACCCACCAACTGAAGAAAAATATGAAAAATTAAAAAGCATACTTATTCAGCGCCTTTCTGTATCACAAGAAAAAAGAGTTCGACAACTTCTGAGTGATGAAGAACTTGGGGATAGAAAACCATCACAGTTCCTCCGACACCTACGCTCTCTTGCAGGAAGCACACTCACAGACGACAATATTATACGCCAACTTTGGTTACGCCGCTTGCCTCATCAGGCTCAAGCTATACTGGCAGCACAGGCTGACCTTGGCCTTGACAAATTGTCAGAACTAGCCGACAAAATTCTTGAGTTGGCCCAAACTCCCCCTATGGTATGTTCAACCGCAACATCTTCGAACAGTTTAACCCTTGGTTCATTAGCCAAACAACTAGAAGAGATCAGTAGCCAAGTTGCTGCCCTATCTAGGCGACAGAGCCGCCCTTATCGTGACAGATCATCATCTCGCGGCCCTAAAATTTGTTGAACGCTCCCCTGA

Protein

MASQEIQEQLQQLLAANAALQKQLEGNERETKVCRVTVKLPTFWADKPAVWFAQIEAQFQIANIVTDTTKYNYVVGHLDQRIAGEVEDIITNPPTEEKYEKLKSILIQRLSVSQEKRVRQLLSDEELGDRKPSQFLRHLRSLAGSTLTDDNIIRQLWLRRLPHQAQAILAAQADLGLDKLSELADKILELAQTPPMVCSTATSSNSLTLGSLAKQLEEISSQVAALSRRQSRPYRDRSSSRGPKICXTLP

Uniprot

A0A085LTM6   A0A085N4U2   A0A085NBV3   A0A0N5DV64   A0A2A4J8M7   A0A0J7KD10   + More
A0A151IZ47   A0A151ITG2   A0A151J3D2   A0A2J7RGP3   A0A2J7PML8   A0A2J7QH56   A0A0J7K6I6   A0A2J7QJD3   A0A2J7RQK2   A0A0J7K7T5   E2BBH0   A0A2J7PCS9   A0A1W4WYX3   W8B3F8   A0A0J7K112   A0A2J7QTC8   A0A1Y1MXV9   A0A151JCH0   A0A0L7QK36   A0A151K0A8   A0A0J7K6V3   A0A0L7QJB5   A0A2H1WXE7   A0A1W4XBP5   A0A2J7Q198   A0A2A4K2H4   A0A2G8LNJ3   A0A2G8L3A3   A0A2J7PLR6   A0A1W4XIW9   A0A1W4X6B7   A0A085MBU7   T1IE13   A0A0J7K6V1   A0A293MTK4   A0A131YTY1   A0A2J7Q5S3   A0A2G8L664   W4Z1M4   A0A2J7PD24   A0A154NZG0   A0A026VRX8   A0A2A4JHF4   A0A139W8G7   A0A293M349   D7GYF3   A0A293M3N6   A0A2G8JGE7   A0A3L8D4U3   A0A085NBV0   D7EJX5   W4YWZ1   A0A0N5DP72   A0A151JBY5   A0A085N631   A0A139WA14   A0A085NTM8   A0A183NPV5   A0A085M716   A0A183MCI1   A0A154PMS5   A0A1S3CY78   W4ZJX1   A0A183JUP6   A0A095A584   A0A0J7NAK0   W4YUC1   C4QPF1   A0A182G9J3   A0A085MZ32   A0A139WPP8   A0A293N5Q9  

Pubmed

24929829    20798317    24495485    28004739    29023486    26830274    + More
24508170    18362917    19820115    30249741    22246508    22253936    26483478   

EMBL

KL363297    KFD48322.1    KL367555    KFD64488.1    KL367519    KFD66949.1    + More
NWSH01002598    PCG67884.1    LBMM01009142    KMQ88358.1    KQ980726    KYN14011.1    KQ981018    KYN10257.1    KQ980296    KYN16851.1    NEVH01003759    PNF40011.1    NEVH01023981    PNF17578.1    NEVH01014357    PNF27922.1    LBMM01013103    KMQ85816.1    NEVH01013558    PNF28672.1    NEVH01000707    PNF43124.1    LBMM01012075    KMQ86422.1    GL447057    EFN86960.1    NEVH01026435    PNF14140.1    GAMC01010905    JAB95650.1    LBMM01018126    KMQ83871.1    NEVH01011195    PNF31836.1    GEZM01017686    JAV90494.1    KQ979048    KYN23218.1    KQ414987    KOC58988.1    KQ981301    KYN43041.1    LBMM01012479    KMQ86203.1    LHQN01021927    LHQN01025379    KOC58628.1    KOC58659.1    ODYU01011787    SOQ57731.1    NEVH01019603    PNF22346.1    NWSH01000267    PCG77880.1    MRZV01000025    PIK61772.1    MRZV01001127    MRZV01000236    PIK40395.1    PIK54731.1    NEVH01024424    PNF17276.1    KL363205    KFD54693.1    ACPB03037918    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    GFWV01018540    MAA43268.1    GEDV01006140    JAP82417.1    NEVH01017547    PNF23930.1    MRZV01000203    PIK55728.1    AAGJ04018350    NEVH01026394    PNF14234.1    KQ434784    KZC04993.1    KK111495    EZA46390.1    NWSH01001575    PCG70822.1    KQ973343    KXZ75568.1    GFWV01009910    MAA34639.1    GG695519    EFA13383.1    GFWV01009909    MAA34638.1    MRZV01002078    PIK34788.1    QOIP01000013    RLU15256.1    KFD66946.1    KQ971759    EFA12902.2    AAGJ04150373    KQ979103    KYN22624.1    KL367547    KFD64927.1    KQ971745    KYB24749.1    KL367475    KFD72824.1    UZAL01010187    VDP03243.1    KL363221    KFD53012.1    UZAI01011057    VDP08268.1    KQ434992    KZC13185.1    AAGJ04133382    UZAK01014297    VDP04051.1    KL252356    KGB42042.1    LBMM01007548    KMQ89630.1    AAGJ04172791    CABG01000134    CAZ37338.2    JXUM01049417    KQ561603    KXJ78027.1    KL367594    KFD62478.1    KQ971307    KYB29887.1    GFWV01023686    MAA48413.1   

Proteomes

UP000046395    UP000218220    UP000036403    UP000078492    UP000235965    UP000008237    + More
UP000192223    UP000053825    UP000078541    UP000230750    UP000015103    UP000007110    UP000076502    UP000053097    UP000007266    UP000279307    UP000050791    UP000050790    UP000277204    UP000079169    UP000050789    UP000008854    UP000069940    UP000249989   

Pfam

PF00078   RVT_1        + More
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF10551   MULE
PF00665   rve

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR001969   Aspartic_peptidase_AS       
IPR000477   RT_dom       
IPR001995   Peptidase_A2_cat       
IPR034132   RP_Saci-like       
IPR041588   Integrase_H2C2       
IPR041577   RT_RNaseH_2       
IPR041373   RT_RNaseH       
IPR018289   MULE_transposase_dom       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd06094  RP_Saci_like

ProteinModelPortal

A0A085LTM6   A0A085N4U2   A0A085NBV3   A0A0N5DV64   A0A2A4J8M7   A0A0J7KD10   + More
A0A151IZ47   A0A151ITG2   A0A151J3D2   A0A2J7RGP3   A0A2J7PML8   A0A2J7QH56   A0A0J7K6I6   A0A2J7QJD3   A0A2J7RQK2   A0A0J7K7T5   E2BBH0   A0A2J7PCS9   A0A1W4WYX3   W8B3F8   A0A0J7K112   A0A2J7QTC8   A0A1Y1MXV9   A0A151JCH0   A0A0L7QK36   A0A151K0A8   A0A0J7K6V3   A0A0L7QJB5   A0A2H1WXE7   A0A1W4XBP5   A0A2J7Q198   A0A2A4K2H4   A0A2G8LNJ3   A0A2G8L3A3   A0A2J7PLR6   A0A1W4XIW9   A0A1W4X6B7   A0A085MBU7   T1IE13   A0A0J7K6V1   A0A293MTK4   A0A131YTY1   A0A2J7Q5S3   A0A2G8L664   W4Z1M4   A0A2J7PD24   A0A154NZG0   A0A026VRX8   A0A2A4JHF4   A0A139W8G7   A0A293M349   D7GYF3   A0A293M3N6   A0A2G8JGE7   A0A3L8D4U3   A0A085NBV0   D7EJX5   W4YWZ1   A0A0N5DP72   A0A151JBY5   A0A085N631   A0A139WA14   A0A085NTM8   A0A183NPV5   A0A085M716   A0A183MCI1   A0A154PMS5   A0A1S3CY78   W4ZJX1   A0A183JUP6   A0A095A584   A0A0J7NAK0   W4YUC1   C4QPF1   A0A182G9J3   A0A085MZ32   A0A139WPP8   A0A293N5Q9  

KEGG

NA   

GO

GO:0004190   GO:0005634   GO:0016021   GO:0015074   GO:0003676  

Length:

250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000780000000000001

Exp number, first 60 AAs:

0.00045

Total prob of N-in:

0.04266

outside

1  -  250

 

 

Pi

222.819126

Theta

36.473307

Tajima's D

3.109636

CLR

0.387015

CSRT

0.985400729963502

Interpretation

Uncertain