Silkworm Genome Informatics Database

Gene

KWMTBOMO05366

Pre Gene Modal

BGIBMGA002377

Annotation

PREDICTED:_zinc_finger_protein_821-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr9(-):15665166-15671844 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 2.827

CDS

ATGCGTAAATATACTCGTCGAAAGCCAGAAAGCGAACTGATAGTAGACGCTCTCGACTTATGTAGATTGTGCCTTCAGAAACCTCAGGAGGCCATTCCCATTTTCGAAGGCACCAACAATATTTGTGGAACACTGTCCCTGAGAATCATGATGTGTGTAGGCCTTGAGTTAACACACGAGAATTGTCTACCAAATGTAATTTGTACTGGCTGCTTTGAAGAACTAAATAGATGTTATACATTCAGAAAAAAATGTGAAGTCTCATATCAAAAACTCAAATCACATTTACAAGCGGTCAAAGAAAAGGAATGTTTAAACCAGACAATGCAGCAAGCTGTTAAAGATGATGTGAATTTAAATAAAAATGTAATTAATAATCATATAAATAAAGATAATGGATATGCTGTGTTAAGTCATGATCAGTTAACATCAGACTTGCAAATATGCAATGGGGTTATCGAAGTGAATAGTGATGCTACTATGAATGAGCAAAGTATATTTCAAGATGGAAAACGTTTTGGTGAAACAGACGATGTATTGCAGGAAGCAAGAAATACAGAGATCACACCAGATATATCATCATTCTTATCAACATTACTAGTACAAGTTGGAGTGCTATCCCAGCAAGATGATATGTATGTATTTATGGACTCGAGTATAAACAATTTGCAGCTGTCCACGGGCGATGGAAAGACTGTATCGTTAGAACTAGTAGAAGAAGATGAGGAAGAAAAGGAACCTGTTAAAGAAACAGATCCCGTGTTAAATGAAGAAAACACAAATGTTATTACTTCGACTGATACAGCGAACGTTAGCCAACCTTTGAATCAAAAACTACCAAGCAGCGAGAATCAGAGCAAAGGACAGGGCGCGTGGTGCGGCGCGTGCGGCAAGCGGCTGTCGTCCCGCGGCGCGCTGCGGCGACACGCGCACGTGCACACGGTGGAGCGGCCGCACGCCTGCTCCGTGTGCGGCCGGACCTTCGCGCAACGCTCCGTGCTTCAGAGACACAAACTAGTACATCTAGAGCAGCGCCCGTTCCAGTGCGAGTGGTGCGCCAAGAGCTTCACGCAGCGCTCGGCCCTGGCGGCGCACCGCCGCGCGCACGAGCCGCCCCACGCGCGCGCCCTGCACCTGCACCGCTGCGCGCACTGCACCAAGCTCTTCCTGCACTCCTCCAGTACGTACCCACGCCCCGCCTAG

Protein

MRKYTRRKPESELIVDALDLCRLCLQKPQEAIPIFEGTNNICGTLSLRIMMCVGLELTHENCLPNVICTGCFEELNRCYTFRKKCEVSYQKLKSHLQAVKEKECLNQTMQQAVKDDVNLNKNVINNHINKDNGYAVLSHDQLTSDLQICNGVIEVNSDATMNEQSIFQDGKRFGETDDVLQEARNTEITPDISSFLSTLLVQVGVLSQQDDMYVFMDSSINNLQLSTGDGKTVSLELVEEDEEEKEPVKETDPVLNEENTNVITSTDTANVSQPLNQKLPSSENQSKGQGAWCGACGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLEQRPFQCEWCAKSFTQRSALAAHRRAHEPPHARALHLHRCAHCTKLFLHSSSTYPRPA

Uniprot

H9IYP3 A0A2A4J9H6 A0A2H1V693 A0A212EUT3 A0A3S2TH19 A0A194QJ64 + More
A0A0N0PBP9 D6W9I5

Pubmed

19121390 22118469 26354079 18362917 19820115

EMBL

BABH01011173 NWSH01002259 PCG68777.1 ODYU01000898 SOQ36353.1 AGBW02012297 + More
OWR45249.1 RSAL01000148 RVE45828.1 KQ458714 KPJ05434.1 KQ460864 KPJ11807.1 KQ971312 EEZ98149.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000283053 UP000053268 UP000053240 + More
UP000007266

PRIDE

H9IYP3

Pfam

PF07776 zf-AD + More
PF00096 zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IYP3 A0A2A4J9H6 A0A2H1V693 A0A212EUT3 A0A3S2TH19 A0A194QJ64 + More
A0A0N0PBP9 D6W9I5

PDB

2I13 E-value=1.10485e-10, Score=160

KEGG

101738544 no KO assigned | (RefSeq) zinc finger and BTB domain-containing protein 17-like

GO

GO:0008270 GO:0003676 GO:0005634 GO:0046872 GO:0003779 GO:0006511 GO:0005525 GO:0016491 GO:0003824

Length:

400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03916

Exp number, first 60 AAs:

0.02265

Total prob of N-in:

0.09341

outside

1 - 400

Pi

184.551029

Theta

165.300019

Tajima's D

0.377112

CLR

0.289526

CSRT

0.480825958702065

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics