Silkworm Genome Informatics Database

Gene

KWMTBOMO05348 Validated by peptides from experiments

Annotation

nimrod_B_precursor_[Bombyx_mori]

Location

Bomo_Chr9(+):15283516-15290651 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.612

CDS

ATGTTGATTATAATATATGTGCTCGGGCTCTTGCTGGTATCCACCGGCGGTCAGTACGCGAAGTCGGGGGTCAAAGGTGGCTACGGAGGTCGCGGCTTCCAAGATAACACCAATGAGAACATCGCCAAATTTTACGGGAACAACACCAGCCATGGTTTTCTATCGCAAAACCATACGGTTAATACCATGAGCGATATCGGAGTATGTTATATCGAAGTACCTACAGCTCAACTTGTCGAGGATCAGAAGCAGATACCTAAAGGAAACGGATCCCGGCCCGATCTCAGCGTCATTCGTTCTTGCTGCAATGGCTACGTGAGGAACATCTACAACCCTAACATTTGCGAGCCGCACTGCAGCAAAGGATGCGTCAACGCATTGTGCACAGCGCCTGAAATCTGCACGTGCTTCCCTGACCACGTCAAGAACGCCGGCGGCTTCTGCATCGCTACATGCCCGATTGGATGTCAAAATGGCCACTGCTCCGGTCGAGAGTGCGTCTGCAGGGATGGCTTTAAACTAGACTACGGACGTAAATACTGTGTGCCAGCTTGCAGTAACAACTGCGCCGGTGTCGGTAATTGCACTTCACCAAACCGATGCGACTGCGCACCTGGTTATCAGGCAACACACGATGGATCGTGCAGTCCACAATGTCGCGATTGCGCGCCCGATGCTTGTGTTGCTCCAAATGTGTGCTCAGGCCCTACCAGAATTCCGTTGCCGGGACAAAACACCCAAATCCCTACATCTAATTATCCAGGATATCATAGTTCCACTTTTTACAATCGTCCAGGGATCGCACAAGGTCCTCTTCCCACCCAACAGCCGAATTATGTTGTCGGTCCCTCATACGGAAGCAGCCAACCAGTTTCTGATAATCAACTAAATGGTCCTTTACACAACACTAGTTTATATCCTTCTTATTCGTTGCAACAATTGAACAATAGCTATCCAGGGCAACAGCCTCAGTATCCTCTACCCAACCAGCCTCAATATCCTTGGCAGCAAAACCCGCATTCCAATCAGCCAAACTACACCTTATTGAATAGCACTCTACACCCACATTGGAAAAATAATTACTTTGATTCCAATCCATCACCATATCAACCACCATATCCAGGACCATTACCGAGCCCGGGCCAACAGCCCATTTATCCAACACAACAGTTTAATCAAACTCAAATGCCACCTCACTATCCTAATCAAAACGTTTATCCTTATCCTTCTCCACTTCAGCCTTGGTTTCCTGGACAAATACCCGCAAACGGTAACCACACGCAAAACGGCTTCCTGGACTTATCCAATCGCACTGTACCTGGTCAAGGTGGCTTCCCTCCCCATCAAGGCTACTATCCGTATCCGCTTTACCAACCGTCGTATCCTCAACCAGGATATTTTCAGCCCAATCAATCCAACTCCGGATACTATGGGCAGCAACCAACACCAAGCACAGATTCCTTACATGCGGGCTATTATAACAATTATGACGGGTCAAATCCTCAGGCGCCTGTATGCTCTCAGCCTTGTCTGAACGGAGTCTGTGTCGAAGGCAACAGATGCTCCTGCAACACTGGATATGTCACTGATAGTATGGACCCCAGTGGATTTAGGTGCATACCTCACTGTGCCGGAGGGTGTCCTAATGGTGTCTGCTCGGCACCAAACCTGTGCATCTGTAACATGGGCTATAAAAAGGACACTAGCGTCAAGGGCAGATCTGTATGCGTCAAGAAAATCAGATGA

Protein

MLIIIYVLGLLLVSTGGQYAKSGVKGGYGGRGFQDNTNENIAKFYGNNTSHGFLSQNHTVNTMSDIGVCYIEVPTAQLVEDQKQIPKGNGSRPDLSVIRSCCNGYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNGHCSGRECVCRDGFKLDYGRKYCVPACSNNCAGVGNCTSPNRCDCAPGYQATHDGSCSPQCRDCAPDACVAPNVCSGPTRIPLPGQNTQIPTSNYPGYHSSTFYNRPGIAQGPLPTQQPNYVVGPSYGSSQPVSDNQLNGPLHNTSLYPSYSLQQLNNSYPGQQPQYPLPNQPQYPWQQNPHSNQPNYTLLNSTLHPHWKNNYFDSNPSPYQPPYPGPLPSPGQQPIYPTQQFNQTQMPPHYPNQNVYPYPSPLQPWFPGQIPANGNHTQNGFLDLSNRTVPGQGGFPPHQGYYPYPLYQPSYPQPGYFQPNQSNSGYYGQQPTPSTDSLHAGYYNNYDGSNPQAPVCSQPCLNGVCVEGNRCSCNTGYVTDSMDPSGFRCIPHCAGGCPNGVCSAPNLCICNMGYKKDTSVKGRSVCVKKIR

Uniprot

Q8WPH3 A0A0N0PEK0

Pubmed

26354079

EMBL

AB062683 BAB78525.1 KQ459934 KPJ19253.1

Proteomes

UP000053240

PRIDE

Q8WPH3

Pfam

PF02363 C_tripleX

Interpro

IPR003341 Cys_rich_tripleX + More
IPR000742 EGF-like_dom

ProteinModelPortal

Q8WPH3 A0A0N0PEK0

PDB

2YGQ E-value=3.85694e-05, Score=114

KEGG

692423 no KO assigned | (RefSeq) NimB, Ad10, BmNimB; nimrod B

GO

GO:0005515 GO:0008237 GO:0008241 GO:0016020 GO:0008270 GO:0006511 GO:0005525 GO:0016491 GO:0003824

SignalP

Position: 1 - 17, Likelihood: 0.968749

Length:

581

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.73423

Exp number, first 60 AAs:

3.72694

Total prob of N-in:

0.19375

outside

1 - 581

Pi

165.306462

Theta

190.087112

Tajima's D

-1.034182

CLR

1.128942

CSRT

0.130893455327234

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
24402669	CIPDANICDSITDCSDGSDEIHCAQCDGPDDYRCDTDECISR	96.30	5e-12
24402669	NAGAYVEAIHTDGGIIGIFDR	100.00	7e-09
24402669	KYCAEIAHGVSSK	100.00	3e-08
25860555	GDICIQVGR	100.00	9e-08
26280517	AAYDDFAK	100.00	9e-08
25044914	CCPEYDNCPVR	100.00	9e-08
24402669	CCENTGFPVAPR	100.00	9e-08
28467696	CDAECVVSIPATK	100.00	9e-08
29197581	YIDWIRDNTDGACYCK	100.00	9e-08
24402669	YCNFSR	100.00	2e-07
26822097	NIYNPNICEPHCSK	95.24	1e-06
25860555	WTVIGIGR	95.24	1e-06
26280517	DIQTVIDYAR	95.24	1e-06
25044914	GCVIAGDTIGSYGSIAR	95.24	1e-06
24402669	GCPVVFFVHGGNYK	95.24	1e-06
27102218	YYTEFDAGNR	95.24	1e-06
28467696	GCVIAGDTIGSYGSIAR	95.24	1e-06
29197581	CSCNTGYVTDSMDPSGFR	95.24	1e-06
26822097	GFQDNTNENIAK	100.00	3e-06
26280517	VIPEFDVPGHTR	100.00	3e-06
25044914	CSCAFENVFMAEIK	100.00	3e-06
24402669	CSCAFENVFMAEIK	100.00	3e-06
28467696	CSCIPGYVESPNTVR	100.00	3e-06
29197581	CDCAPGYQATHDGSCSPQCR	100.00	3e-06
26822097	DIISDIK	100.00	0.002
25860555	CICIDNSDQCR	100.00	0.002
26280517	NGVIMVQANSAFNHYIK	100.00	0.002
25044914	NIYIIQTGTK	100.00	0.002
24402669	NIYGNGIDTEISIR	100.00	0.002
27102218	GCVNAICTAPEICTCFPDHVK	100.00	0.002
28467696	NIYIANR	100.00	0.002
29197581	GCVNAICTAPEICTCFPDHVK	100.00	0.002

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics