SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05332
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 1.616
 

Sequence

CDS
ATGCAGTTCCGCCTTGTCGTGGCGGTGGGGCTTAAGCGTGCGTCCCTAAAATCGCGTGCAGAGGAATCTGTGTGGGACGCCGCGACCAAGAGAACTGCGCCCAGCTCTCTTCGGCCGCCTCCGCGTTCTGCGGGGGATGCCATGAGAGAGAGCGAGGGACCTTCTCCCCTCGCCCTTTGCACTGACAAAGAGTTCCATTCTGGGGATGAGGGGTTGGCTCTCGGGAGCCTGGAGGGTACCGCCCGCGAGTCGGGCGGAGAATCCCTCCGTGCTTCCTCAGTGGAAGCACGCTGCCCCACGTACTCTGGGGGGGGCAACAATTGTCAGGATGAAGGGGGCTGTGCGACGGGCAGCGGAATTCCCGTCGAACCGAGGCGCTCCCCGATCGCCGGCTCGATGCGCTCTGCGCTCGCCAGCGACTCGGGTGCAATCAATCCCACCAGACCATCGGCGGGGAAAAAGAGGGGGAGAAGAAAGACGGCATTACCAACTTCCGATGACGGCGGCGCATCATCCTCCGGCACTGAGGTACCGGAAAAAACGATGGCCATCGAGGAGGTGACTCCGGTAGTTTCGATGCCTGCTACGTCGGAAGACGCGATGCCCGCTCCCCAGTGGGCACCAGTGAGGAGGAGGGGCGCTGTGTCACCGGCGACGTCCGTGGAGTCCATGTCGACGTCGGCCGCGTCCCTGGCTAGCGGGGACGAGACGTTCCGGGACCTCGACCTTGCATTGGTTAATTTGGGTAAGTTGCTGTCGACTGTGGCTTCCAAGGGCGCCGAGCCAGGCAGCAGTTACCGGAAACGGCTCCGGGAGGCAGCCGCTATGGTGAGAACGAGGCTGATCCCCACCATGTCCAAGCTTTATGACTTGGTAGAGAGCCGAGAGGTGGAGAGCAAGGATCTCGTCGCTCATTGTGACTCCAGCGAGAGTCGCATCCCGGGAGACACCCCGGCCTTGCGAGGAGGGACTCCCTTGTTGCCGAGGCCTCCGCTGGCACGCTCTGGACCCCCCGCGGGGGCGATGGATACTGACGTGCACTTGCGGTCGGCGGTGGGTTTGACAGCGCAAATGCCAGAGCCCAATCCTGTGGTCCCTGTCCCGCTAGCACCTACCCCCGCGCTCCCTCGCCCTCCACGAAGGGTTGAGTTAAGGCCTGCGCCGCCTCCGCGGATATCGGCCGCCCCTGCGTCTGCACGGAGAGGAAGGCTAAGCCCTGCGCCAGCGCAGGCTGAAGACATCCGTTCGCCACTGGCGAGGATGGTGGATGAGTGGCCGGCGCTACCGCCGCCTCTTTCACCCTCGCGTGCTGCGGGATTGCAGGCTCGCGGGCCACACAACACGGCTACTGGGATAGAAGAGGTGGACTACTCCCTCCCAAGCAGAGAGGAAATGGTGGCCTGTATCTCGCGGGCGGTGGCGGTTGAGGTCAGCAAGCACTTTGCCGGCCTCGAGGAGATACTCCGCTCTTTGATTGATTCCGGAGATTGCGTCCCGGCGCCAACAACCGCAGCCGCCCCGCGGGGCCAGGCCGCCCGGCCGACCTCTACCCCCACGCCATCCGCGAGGTTGGCCCGGCGTAGAGGCCGGGACCAGAATAACAAGGGTACGGGTGCCCAGAATCCTGCCCCGAAATCCCAACCCCGTCCCCTTCCTGCTCCCCCGTCAAGCATGGACGAGAGCTGGACGGAAGTGGTGAAGCGGGGCAAGAAAGCTAAGCAGCAGACAGCGGCTCTGGCAGCTCCCAGAGGGGGTCGAGCGCCAACTGCGGCAGCCCGAAGCACAGAGCTGGCGGCCGTGGTTGCTCCTCGTGAGAGTCGAGCACTGGCAACCAGGAAGCAGAACGGCAAAAAGAAGAAGCCGCGCGCAACGCGGTCGGCTGCCGTCGTAGTGACGTTGCTACCGGCCGCCGCCGAAAAGGGCCTCACCTATAATGACGTGATGGCCCGAGCGCGCGCGGCTGTAAGTTTGGACGAAATCGGGGCGGAGGAGGGCCTCCGCTTCCGGCATACAGCCAATGGAGCGAAGCTGCTGGAGTGTCCCGGTGCCGACAGTTCTGGCATCGCAGACAAACTAGTGGCGACGCTCCGCGTGGCACTGCCGGAGGATGAGGTGCGCGTGCACAGGCCGGTGAGGATGGCCGAGATTAGAATCACTGGCCTGGACGACTGTGCTACCAAGGAGGAGGTGGCAGCCGCAATAGCCGCTCAAGGTGGATGTGCCTTGGAGAGCGTGACCGTGGGCGAACTTTGCTCAGGGTACTCCGGAGCTAGGTCAGCGTGGGCGCGCTGCCCTGTGGAGGCAGCCACTTCCTTGGCCACTCCTCCGCCGGGAAGGTCAATGGGGGATCCGGGGAGACTGCGCATGGGCTGGATAGCGGCCCACGTGCGTCTCCAAGAACCACGTGCCTGGCGATGCCTCCGGTGCTTTAGCACCGGGCACGGCCTCGCTAAGTGCACCAGCTTAGTTGACCGCAGCGGTCTATGTTTCCGCTGCGGCCAACCGGGTCATAAAGCGGCGTCCTGCACGGCCGCCCCGCACTGCGCTCTGTGCGCTGCGGCCGGGCGTAGGGCAAACCACCGGGCGGGAGGCAAGGCTTGCTTCCCGTCCAGTGTTAATACTGAACGCAACCGGCGCCGAAAATCGAGGCGCCGGCAGAAGAGAAGGTTGGCCAGAGGAGCACTGGCCAATGTTGCAATCCCCACTGCGGCGCCGGTGCCGGAGGGTGGGGGCAGCGGAAACCTGAACCACTCCGCCAGAGCTCAGGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTCGGGGACGATAGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGACGATCCCCCCCTTGGCGATGGTGACCAAGGGCCAAGGGTTCGTCGCGGTACAGCTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAATAGGCCTACTGTCGACTTCGGGCATTTCCTGGGCGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCTCGTCCAGTGATTCTTGCGGGGGACCTCAACGCGAAGTCTGTCGCATGGGGCTCCCCCCGCTCGGACGCTCGTGGTAGGCTGTTGGAGAGGTGGGCGAACGTGACCGGCCTCTATTTGTTGAATAGAGGGTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTCGCAAGCCCGGCCATCGCACGTCGTATCCGCGACTGGAGAGTTTTGGAGGGGGCGGAGACACTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGTCCACGGGGACCACCCCCGTGGTGCGTCCCGGTCATTCCCACAGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTACGGTGGCGGCGTGGGCGCCCATGCGTCCACACCCAGTTGAGGTCGAGGACGAAGCGGGGTGGTTCCGGGACACGATGCGTCGCATCTGTGACGTGTCGATGCCCCGGATTAGCCCTCGACCTCCCAATCGCCAAGTGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCCAGTGCGCGAGGCATCGCCGCCGTCGCCTGCCGCGGCGCAACGATCCGGTGGCGTTCGCGGTGGTAGAGGCCCAGCTGTACGGCGCATTTCGCGTCGCACAGAGGGCGTTGCAGCTGGCCATCAGAAGAGCCAAGGACCAACACATGGAGAGTCTCCTGGAGACGCTGGATGAGGATCCGTGGGGGCGACCCTATCACATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCAATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCACTGTTCCCGCAGGAGCAGGGGGGATTTGTCGCTCCCGCTATGGGCGCGCCGCCGGAGTACGACGGCGTCGCCCCTGCTGAGGTGCCCCATATAACAGGGGCGGAGCTCCGTGTGGCAGTACGCAAAATGTGCGCAAAGGACACTGCACCTGGCCCGGACGGCATCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTTTTGAGGCTTTATAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTTGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGTTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGATCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCATCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGGACAGATCGGTCACATGTACCGGACACGGTGGGGTCGTACATCGGTTCCCGGTCGTTCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTTCCCAACATCGGGGGCCTGACCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGCGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGTTACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCATTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTTGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAACGACGAGTCGTGGAAGGCGATGCTCGACTTGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGA
Protein
MQFRLVVAVGLKRASLKSRAEESVWDAATKRTAPSSLRPPPRSAGDAMRESEGPSPLALCTDKEFHSGDEGLALGSLEGTARESGGESLRASSVEARCPTYSGGGNNCQDEGGCATGSGIPVEPRRSPIAGSMRSALASDSGAINPTRPSAGKKRGRRKTALPTSDDGGASSSGTEVPEKTMAIEEVTPVVSMPATSEDAMPAPQWAPVRRRGAVSPATSVESMSTSAASLASGDETFRDLDLALVNLGKLLSTVASKGAEPGSSYRKRLREAAAMVRTRLIPTMSKLYDLVESREVESKDLVAHCDSSESRIPGDTPALRGGTPLLPRPPLARSGPPAGAMDTDVHLRSAVGLTAQMPEPNPVVPVPLAPTPALPRPPRRVELRPAPPPRISAAPASARRGRLSPAPAQAEDIRSPLARMVDEWPALPPPLSPSRAAGLQARGPHNTATGIEEVDYSLPSREEMVACISRAVAVEVSKHFAGLEEILRSLIDSGDCVPAPTTAAAPRGQAARPTSTPTPSARLARRRGRDQNNKGTGAQNPAPKSQPRPLPAPPSSMDESWTEVVKRGKKAKQQTAALAAPRGGRAPTAAARSTELAAVVAPRESRALATRKQNGKKKKPRATRSAAVVVTLLPAAAEKGLTYNDVMARARAAVSLDEIGAEEGLRFRHTANGAKLLECPGADSSGIADKLVATLRVALPEDEVRVHRPVRMAEIRITGLDDCATKEEVAAAIAAQGGCALESVTVGELCSGYSGARSAWARCPVEAATSLATPPPGRSMGDPGRLRMGWIAAHVRLQEPRAWRCLRCFSTGHGLAKCTSLVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRANHRAGGKACFPSSVNTERNRRRKSRRRQKRRLARGALANVAIPTAAPVPEGGGSGNLNHSARAQDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDSGLAAIVIRRDATIPPLAMVTKGQGFVAVQLEGTVVIGAYFSPNRPTVDFGHFLGGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLLERWANVTGLYLLNRGSVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADVHGDHPRGASRSFPQWALKRLNKELLMEASTVAAWAPMRPHPVEVEDEAGWFRDTMRRICDVSMPRISPRPPNRQVYWWSPEIAQLRVECVRARRQCARHRRRRLPRRNDPVAFAVVEAQLYGAFRVAQRALQLAIRRAKDQHMESLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQEQGGFVAPAMGAPPEYDGVAPAEVPHITGAELRVAVRKMCAKDTAPGPDGIHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLIGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAICGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEDRSVTCTGHGGVVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNIGGLTRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLIACPAWEGWRRVLVAKIGNDLSLPSVVASMLGNDESWKAMLDLSAPSRRRRRRGA

Summary

Uniprot
ProteinModelPortal
PDB
1WDU     E-value=2.40686e-11,     Score=172

Ontologies

Topology

Length:
1895
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.3328
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1895
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.02484
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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