Silkworm Genome Informatics Database

Gene

KWMTBOMO05331

Annotation

PREDICTED:_centaurin-gamma-1A_[Bombyx_mori]

Location

Bomo_Chr9(-):14619180-14639016 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.73

CDS

ATGGGGCTCTTCGACAAGGGTTTCACCGCGTGGGTTGACGCGGTAATCTTCGTCTTTAGCTTGGAGAACGAGATCAGCTACAACACAATATCTAGTTACTTCAATAAAATGTCCCATTATAGGAATTCAGCAGAAATTCCAATCATATTGGTTGGAACCCAAGATGCCATAAGTGAAAGTAGTCCACGTGTAGTAGACGACAACCGCGCTCGCAAGCTGTCCAATGAACTACGAAGATGTTCATACTACGAGACATGTGCTACCTATGGCTTAAATGTGGAGCGAGTGTTTCAAGATGCGTGTCAGAAGATCGTCGGGACTAGGCTCTCGGCGTCATCCCAGTGCCTCTCCGGGGGCTCGCGTCCGGCAACTCCGCAACCTCTTGCTAATTCACCCAGCCACAATCATACATCGTTTTTATATAAGGATTCATTACCACGGGGCCATCACACGCTCTCTGCGTCATCTCATCACCTACATCGAGGAGCTTCCTCATTTGACGCCTCATCAAACAGCAGCGGCATCTCGTCCACGCACGTCGTCGAGATCCACAGCACCAACGGTTCCGATACGTCATCACGATGGGGCAACTCTCTCGGCAGCCACGGATCGTCTTCTGGCTTGGTTTCCATAGCAACGGAGAATAACAACGTTAAATACACGGCCCGGCACTGTTTGGACGATCTGCAGCCGCTGAAAGACCCCAAAGACCTGCCCACACCGTCTTCAACTCCCACAACCTCGAGGAAAACCAGGAGAAGATCGAATCTCTTCACGCCGTCGAAGAAGGGTGATGATAGATTGAAAAACGGAGAGCTAGGCTCAGGGAGGGCGATACCGTTGAAACAGGGATACTTGTACAAGAAAAGCAGTAAGGCTCTGAACAAAGAGTGGAAGAAAAAGTATGTGACTCTGTGTGATGATGGGAGATTGACCTACCATCCCAGCTTACATGACTACATGGAAGATGTCAATGGAAAAGAGATATCTCTTCAGTATGTGACAGTGAAAGTCCCAGGACAGAAACCACGAGGTTCCAAGTCCATCATTACCACAGTACCGGGATACAACGGATACAGCAGTCTGGATATACACGACAGCATCAGTGGACTCTCTCTTGGGTATAAAGAAAAACGGGCCACAGACAAAGCGCTCATGTCGGCGTTTGAGACGATGAAGGAGCCAGCCTCGAGCCGGCAGTCGCTCGCCTCAGAGCTGGACGTGGGCTCCACCAACGGAGCCGACAAGGATACTCCGCATGTGAAGAAACGACACCGCCGAATGAAAAGCACCGGCCTCAAGAAGGACGGAGACGAAGAGGGGGAGTGCGGCACGTCGTGCGAGTTCACGATCGTGAGTCTGGACGGCAAGCGGTGGCGCTGGGAGGTGTGCGGCGCGGGGGGCGCGGGGGCCGCGGCCGCCGCCGAGCGGGACGCCTGGGTCGCCGCCGTTGAAGCTCAGATCCTCGCCTCCCTACAGGGCAGGACGTCGCGCCAGCCGCTGCCCACGGGCGCCAACACCACGGGCGACGTGCGCGCCACGCGCTACGTGCGCCGCGTCGCCGGCAACCACCAGTGCTGCGACTGCGGCGCCCCAGATCCGGACTGGGCGAGTCTGAACCTCGGCGTGCTGATCTGCATAGAGTGCTCCGGGGTACACCGCAACCTCGGCTCCCACATATCGCGAGTGCGCTCGCTGGACCTGGACGAATGGCCGTTGAGTCACGTCAGCGTCATGGTGTCGATCGGTAACGCTTTAGCCAATTCAATATGGGAGGCCGACCTCCGGGGACACGTGAAACCGGTTGCGACTTCCTCCCGGGAAGAGAAGGAGCGATGGATCCGCCTGAAGTACGAGCGGCGGCAGTTCTACAGCGCGACGGAGGCGGCGGGCGGGCTGGAGGCGCTGAAGGCGGCGGGCGCGCGCGGCGCCGTGGGGCAGCTCGTGCGCCTGCTGGCCGCGCCCCCGCCCCGCGCGCCCGCCCCGCACGAGCGCGCGCTGGCGCTGCGGGCCGCCGTCGCCGCCGGGCACCTCGCCGCCGCGCAGCTGCTCATATGGCACAACGGCAACCCGAACTTCCCGGACGCGGACGGGCACACGTGCGTGTTCTACGCGCGCGCGGCCGCCAACCACCTATCGGGCATCCCCACCCAGTACCCGCGGAACTTGCAGCTGACGTGCCCTCTGCACCCGACGCCGCCCTCCAACGCGTCCAGCTCCTCGTCCGCTTCGAGCTCCAAGAGCCTCAAGAGCCCGGAGCCGGAGTGCAACTGCATCATCTTCGAACTCCTGAACGCCCAGAGCGCCAGCAACGCGCTGGTCGAGCTGCTGATCGGCCTCCAGAACAACCACTACACGAACGGCTACGATTCGAATCTAGTGTACGCCCACAACACGCTCGGCCGCCCGACCCTGAGCCAAAATCTCTCGTTGACCAACGGGAAGTGCGGGAGCATCTAA

Protein

MGLFDKGFTAWVDAVIFVFSLENEISYNTISSYFNKMSHYRNSAEIPIILVGTQDAISESSPRVVDDNRARKLSNELRRCSYYETCATYGLNVERVFQDACQKIVGTRLSASSQCLSGGSRPATPQPLANSPSHNHTSFLYKDSLPRGHHTLSASSHHLHRGASSFDASSNSSGISSTHVVEIHSTNGSDTSSRWGNSLGSHGSSSGLVSIATENNNVKYTARHCLDDLQPLKDPKDLPTPSSTPTTSRKTRRRSNLFTPSKKGDDRLKNGELGSGRAIPLKQGYLYKKSSKALNKEWKKKYVTLCDDGRLTYHPSLHDYMEDVNGKEISLQYVTVKVPGQKPRGSKSIITTVPGYNGYSSLDIHDSISGLSLGYKEKRATDKALMSAFETMKEPASSRQSLASELDVGSTNGADKDTPHVKKRHRRMKSTGLKKDGDEEGECGTSCEFTIVSLDGKRWRWEVCGAGGAGAAAAAERDAWVAAVEAQILASLQGRTSRQPLPTGANTTGDVRATRYVRRVAGNHQCCDCGAPDPDWASLNLGVLICIECSGVHRNLGSHISRVRSLDLDEWPLSHVSVMVSIGNALANSIWEADLRGHVKPVATSSREEKERWIRLKYERRQFYSATEAAGGLEALKAAGARGAVGQLVRLLAAPPPRAPAPHERALALRAAVAAGHLAAAQLLIWHNGNPNFPDADGHTCVFYARAAANHLSGIPTQYPRNLQLTCPLHPTPPSNASSSSSASSSKSLKSPEPECNCIIFELLNAQSASNALVELLIGLQNNHYTNGYDSNLVYAHNTLGRPTLSQNLSLTNGKCGSI

Uniprot

A0A2H1V234 A0A212EKW6

Pubmed

22118469

EMBL

ODYU01000333 SOQ34903.1 AGBW02014209 OWR42108.1

Proteomes

UP000007151

Pfam

PF01412 ArfGap + More
PF00071 Ras

Interpro

IPR020849   Small_GTPase_Ras-type        + More
IPR027417   P-loop_NTPase
IPR001806   Small_GTPase
IPR001849   PH_domain
IPR037278   ARFGAP/RecO
IPR011993   PH-like_dom_sf
IPR001164   ArfGAP_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR038508   ArfGAP_dom_sf

SUPFAM

SSF57863   SSF57863        + More
SSF48403   SSF48403
SSF52540   SSF52540

Gene 3D

2.30.29.30 3.30.40.160 1.25.40.20

ProteinModelPortal

A0A2H1V234 A0A212EKW6

PDB

3IHW E-value=2.28163e-39, Score=411

KEGG

101737456 K12491 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1/3 | (RefSeq) centaurin-gam

PATHWAY

04144 Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005096 GO:0007165 GO:0003924 GO:0005525 GO:0016020 GO:0046872 GO:0007264 GO:0008270 GO:0006511 GO:0016491 GO:0003824

Length:

819

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0569500000000001

Exp number, first 60 AAs:

0.04276

Total prob of N-in:

0.00205

outside

1 - 819

Pi

181.880711

Theta

154.125828

Tajima's D

0.376653

CLR

0.713365

CSRT

0.480425978701065

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics