SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05328
Pre Gene Modal
BGIBMGA003083
Annotation
WD_repeat-containing_protein_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 3.511
 

Sequence

CDS
ATGTTATCGCAGCAACCACAACCACGAAGAAAACGATTCATACCCAAATATGAAGTAGAAGGAGTATTCAAAGTTGTTCTAGGCGAAGAAACACAGAGTCAAATCGAAATGGTCGTAGGAACACATGTAAATGCTCAATATCCTTGGAAGGAAGTCAATAAGTCCAAAATATTAGAGACAATCGATATTGGTGGTGAACTGTCAGAATTTCATTCTTTGAAACAACAAATAGAAGTGTATGATAGTGAAACAGTTTTTATGGGGTACATTGCTGATGAATCAAATGACGTTGATGAATTCTATGTGTGCCTTACAAAAGACGCAAGAGATCATTGTAAGCAGCAATCTGATAAATTTATAAGGAGACAAGAGAAGAAACTAGAAAAGGCTGTCCAAAAGAAACCAAGGCCTTGGAAAAGTTTTGGAAGTGAAGTGGAAATTAAGGGGCTCGTTCCAATCAATACACGACCTCTAATGGAAATGGAAGTAAAGGCAAAGTTTCCTACTGTTTATCAACCTGATAAATTTCGTATTCGTGATACAAGTTCAGTTCGTGATGGTTATATCGAGCTGACACCTTATCGGCAGAAGTTTAATAATGTTTTTAAGCGTAGAATAGATTGTGGTTCTCAAGCAGCGCCTGCAAAGATTAATAGGGAAGCTCAAACCGAGTTAAGGTATCCTCAAAATATGTGGACTCAATCTATAGCTGATGCTCTAAGTCAAGTAGATGATGTAGAGGCTGGTGGCGATACAGGACAAACGTCACCAACTAAAAATAAAGAAGAAAGTTCCGAGGAGGACGAAGCGGAGACCAAACAGGCTCCAGATGAAGTAGGACTGGCAGCGTACAGAGCTGCGTTGAAACGTATGCGACGACCGTCCTATATCAAAATGATCAATAATTTTGTGACCAAGAAGTGTGAAGAAATGGACACGATAGTAGAACTCAATACAGTGATGGACATGTACTGCAATGATTATCCAAATTTAATAGTTCAAAAAACAACCGATATTTATAATTCGATGATATTTGAAGAATACGTTTGTTTCACTGACGTCAGAGCGAAAGACAAATATATTGCTAGTGCAGTATTTCACCCTATGTGGTCAGGTATTGTTGCGATTTGCTACGCCGATGGTTCGCCCTCCGTTATGAAAACGATAAGCACGCGTCAAGATCCAATACAAAGAGCTGTTTACGGAATGAACCCAGTCATGATCTGGAGTCATATTGATAGTTTAATACCAAAACTGTATTTAGAATCGCCTCGAGAGGTGAAAGTTTTGTCTTTTTGTCCGTTTGATGAAAATATTCTTGTAGGTGGTTTAATTAATGGTCAAGTTGTAATATGGGATATAACGAACAGGCTTGATAATGTTGAAAAGATTGAAGTTTTAAGCGAGACTAGAGAAAAGTATCGTATAGCAATGAATGCTCATATGGGTTGGATGAAAAATATACGAGACGATTCTGTGGTACAAAGCACTGCTCTAAGTAATTTGATGACAAGTCATTATGGATCTGTCACAGCAATTAAATGGCTCTCTCCCAACTTTAATATAACTGCCACAGGGAAATTTGAGGTAAATGAAAAGGAGAAGAAGACTTTTATGTTTCTAAGTGGATCTGACGATGGTAACATTTTGATTTGGAGTTTATCAGTACAAAATATAAGTCAATTTGATGCTAAAAAAATTAAAAAGTCTAAAAGAGTTCCAAAACGACCGTCTGGTTTATTAGTAGATGTTTCTCCGTATAAAATTTTGGATAGAAATTTGCAGCCGTTGTACAAATTAATACTTGGTGTCGCAGGTCAACCCGAAATATTGCCTGTGCAAAGTTTCGGATTGAATGCCCCAATTATAAACTACATTCACACTCCAAGAAACACAGGTAGCGGTAGAAAGTATTTTACATGTAAAATCGTGCCTCAAACTGAAGCAGACATAAATACTATCGTTTATAGTGGTTCACAGCACGGAGAGATAAGACGCGTTCAATGGGAAGGCCACGAGTTTAATACAGGGGAGGTTGTGAATTCAGAATATTGTGATATTAAATTTTCTTGTACTCTTCACGATGGAATAATAACGTGTACACAGAAAAATCCTTTTATCAGTGGTATAACGGTGACAGTCGGTGGTAAAATTTTCGCAATTTGGTCTGATAATCTCATGCAACGACCGCTATTCTGGAAGAAAAGGCCGTATCGGTTGACAGATGCCACCTGGTCTCTGTATAAGCCAAGTTTGCTATTTTTAACCACTTACGAAGGTGAACTCGAGACTTGGGATTTACTTATAAGGAGCGATCAACCGATTTCGATACAGACCCTTTCTGGAAATATGTTGACAGGAGTTAGTCTTCATACTCTGCCATTGGCTAAGAATATAATAGGCGTGAGTGACGTAAACGGGTCATTTCGAATGTTTTTAGTACCGCCTATATTTATGATTGAAAACCCGACCTACAAATCTCGAATGGAAAACATGATGAGTAGAGAATTAAAAGTAATGACGTCATTTATAGAGTGGCAAGACAAATGGATGAAGAATAATCCACACATTCTTCTAGAAATGAAAAGGAAAGAAGGTGCTTTGCTAGCTGAAAAAGAAGAAGAAAAAAAGAGGCTTAGAGAAGAAGAACAAAATAAACTAGAAGAAGAGGCAGAAGCGAGGAGGCTAGCAAAATTAAAAGTTGTCGGCCCAGAGGAAAGGTGGCAGAAGATTATCCAAAAGTTGATAGAAAGAACTATAGCTGTCAAAAAAAGGATAAATCGAGCTGAATTGATTGAACACGAAAAACCCTTACGTGAACTAGAAGCTCAAAGATTAGAAAAAGAAAGACGAATGCTAGAAATAATGAAAAACCAAAAAACGATATTTAATGACACTGTCGCGATATTATTTCCCGAAGCGATAAAGAAGAAAGAAAAAGTAAAGAAGAGTTTACTCTCTGACGATAAACAATCTTTAAAAAGAGAGTATCTTGAAGATTATGAAAATCTAAAAAGCTTTGCTCACAAAATGGTGAAAGAAAATCCTTATAAAATACCATTCTCTTGGGAGGCGACTATAGCTGAAGGAAAAGAGAGACGGCAAGCATTAAATGCTCACGAAGACTTTATTAAAATGCACAAGAAAAGAATCGAAGAAGATGGTACGGAGTCTATTGTTATGCTTTCTCAGAACAAAGCAGACGAGTCAAATGCTTCGGAAGAAATTGATAAACAAATGGACGATATTTCCAGCGTCTTAGTTGAATAG
Protein
MLSQQPQPRRKRFIPKYEVEGVFKVVLGEETQSQIEMVVGTHVNAQYPWKEVNKSKILETIDIGGELSEFHSLKQQIEVYDSETVFMGYIADESNDVDEFYVCLTKDARDHCKQQSDKFIRRQEKKLEKAVQKKPRPWKSFGSEVEIKGLVPINTRPLMEMEVKAKFPTVYQPDKFRIRDTSSVRDGYIELTPYRQKFNNVFKRRIDCGSQAAPAKINREAQTELRYPQNMWTQSIADALSQVDDVEAGGDTGQTSPTKNKEESSEEDEAETKQAPDEVGLAAYRAALKRMRRPSYIKMINNFVTKKCEEMDTIVELNTVMDMYCNDYPNLIVQKTTDIYNSMIFEEYVCFTDVRAKDKYIASAVFHPMWSGIVAICYADGSPSVMKTISTRQDPIQRAVYGMNPVMIWSHIDSLIPKLYLESPREVKVLSFCPFDENILVGGLINGQVVIWDITNRLDNVEKIEVLSETREKYRIAMNAHMGWMKNIRDDSVVQSTALSNLMTSHYGSVTAIKWLSPNFNITATGKFEVNEKEKKTFMFLSGSDDGNILIWSLSVQNISQFDAKKIKKSKRVPKRPSGLLVDVSPYKILDRNLQPLYKLILGVAGQPEILPVQSFGLNAPIINYIHTPRNTGSGRKYFTCKIVPQTEADINTIVYSGSQHGEIRRVQWEGHEFNTGEVVNSEYCDIKFSCTLHDGIITCTQKNPFISGITVTVGGKIFAIWSDNLMQRPLFWKKRPYRLTDATWSLYKPSLLFLTTYEGELETWDLLIRSDQPISIQTLSGNMLTGVSLHTLPLAKNIIGVSDVNGSFRMFLVPPIFMIENPTYKSRMENMMSRELKVMTSFIEWQDKWMKNNPHILLEMKRKEGALLAEKEEEKKRLREEEQNKLEEEAEARRLAKLKVVGPEERWQKIIQKLIERTIAVKKRINRAELIEHEKPLRELEAQRLEKERRMLEIMKNQKTIFNDTVAILFPEAIKKKEKVKKSLLSDDKQSLKREYLEDYENLKSFAHKMVKENPYKIPFSWEATIAEGKERRQALNAHEDFIKMHKKRIEEDGTESIVMLSQNKADESNASEEIDKQMDDISSVLVE

Summary

EMBL
BABH01010091    AGBW02008646    OWR52877.1    JTDY01003806    KOB68983.1    KQ461002    + More
KPJ10045.1    KQ458714    KPJ05469.1    ODYU01004211    SOQ43840.1    SOQ43839.1    NEVH01022705    PNF18222.1    PYGN01000182    PSN51891.1    AAZX01001004    KK107061    EZA61349.1    NNAY01002659    OXU20848.1    KQ976642    KYM78677.1    KQ981727    KYN37163.1    KQ979236    KYN22178.1    KQ768090    OAD53191.1    QOIP01000014    RLU14738.1    UFQT01000328    SSX23291.1    CVRI01000057    CRL02297.1    GL440966    EFN65214.1    ADTU01011676    CH477855    EAT35607.1    GL888463    EGI60624.1    KQ977873    KYM99187.1    KQ435207    KZC15061.1    GAMC01004375    GAMC01004373    JAC02183.1    CH940647    EDW69020.1    CP012525    ALC43304.1    CH933809    EDW17789.1    CH916366    EDV97026.1    CH954178    EDV50447.1    OUUW01000002    SPP77212.1    CH479191    EDW26359.1    BT011170    AAR84385.1    CH902618    EDV40723.2    CM000159    EDW93783.1    AE014296    AAF50537.1    BT031090    ABX00712.1    CH379069    EAL30757.2    CM000363    EDX09593.1    CM002912    KMY98155.1    KQ414663    KOC65332.1    CH480817    EDW50865.1    CCAG010000243    CCAG010000244    CH963847    EDW73157.2    JXJN01001544    AXCM01000244    AXCN02000626    AAAB01008811    EAA04841.5    ATLV01013557    KE524867    KFB38102.1    APCN01004770    AXCM01000687    KQ434890    KZC10483.1    NOWV01000058    RDD42261.1    DS985250    EDV22170.1    LBMM01010672    KMQ87327.1    AAAB01008984    EAA14764.4    NNAY01000006    OXU32103.1    KZ288334    PBC27874.1    KQ976438    KYM86870.1    GBYB01014799    JAG84566.1    KQ977796    KYM99613.1    GL888828    EGI57733.1    APCN01005853    ADTU01012402   
Pfam
PF00080   Sod_Cu
Interpro
IPR001680   WD40_repeat        + More
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001424   SOD_Cu_Zn_dom       
IPR018152   SOD_Cu/Zn_BS       
IPR036423   SOD-like_Cu/Zn_dom_sf       
SUPFAM
SSF50978   SSF50978        + More
SSF49329   SSF49329       
Gene 3D

Ontologies

Topology

Length:
1089
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0827299999999997
Exp number, first 60 AAs:
6e-05
Total prob of N-in:
0.00278
outside
1  -  1089
 
 

Population Genetic Test Statistics

Pi
80.307887
Theta
171.520799
Tajima's D
-1.520681
CLR
1780.767418
CSRT
0.055647217639118
Interpretation
Uncertain
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