SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05326
Pre Gene Modal
BGIBMGA002523
Annotation
PREDICTED:_alkylglycerol_monooxygenase-like_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 3.652
 

Sequence

CDS
ATGGAAACGTTGTGTAGGAACTCGACACACAGTTCGGAAGTGTCCAAGGGCCTCGGCCGTATGTTCTACCTCGTTAACCCTCAAGATTCCGTTTTTGAGACGCAAAAGGAAGTGCCAAATTTTTATGTTCAATCATGGCCATATTTCTTCACATTCCTGATACTAGAGCATATCATCTTGAAACTGCAAGGAAAGAAGGGAATTCGGTTGAACGATGGAATAACAAGTATATCAAACGGTTTATTACTTGAAACTGGAAGACTATTATGGCGTGGTGGAGAAGCTTACTTATATACCTGGATATATACTAACTGGCGGCTATTAGAGTTGCCATGGGACAGTACGGTCACATGGCTCCTGGCGGCAGTAGGAGTCGACTTCTTCTACTACTGGATGCATAGAGCTTGTCATGAGGTCCACGTACTTTGGGCACATCATCAAGTGCACCACACTTCTGAAGACTTCAACATGGGCGTCGGCATTCGGCAGTCTGTTCTTCAAGGCTGGTGTGGATTTATATTCTACCTCCCGTTGGCTCTGGCGATTCCTCCGGCGCAGTTTTTGGTCCACCACCAGTTCAGCTACCTCTACATGTTCTGGATTCACACGGAGACCATCAAAAGCCTCGGCCCTCTAGAGTACATCCTGAACACTCCCAGTCACCATAGGATTCATCACGGGAGCAACCCGTACTGCATTGACGTGAACTACGGCGGAGTCCTCATCCTCTGGGATAAGCTATTCGGCACATTCAGGGCAGAGCGGGAGGAGGACCGCATTGTCTATGGCCTCATCTACCAACAGCCTTCCTTCAACCCTCTGCATTTGCAGACCTACTACACGCGGTACGTGATGCAAAAATATAAAAGCTTCGACAGCTGGAAGCACAAACTTCAAGCTGTACTCGACAGGCCTAGTTGGAAACCGGGCAACACCATCAGATTCCGGGATATGGAGGAAGATCCGGCCATACACGCACAAGTCAAGTACAATGTGATCCTTCCGAAGTGGTGCACCGCTTACCTGCTCACTCACTACGGGCTGATACTGTATGGATTCCATCAGCTCTTCTTGTACAACTCTGAATTGCCGACAACAACAGTGGCCATTCTAGTATTATACATATTTGCCTCGCTCATTATATTCGGGATGATTTTAGACGCTTCGCCAAAAGCTCCGTTCTACGAAGCTTTGCGGTGTCTCAGCTTAGTACTAGTTGTGAAGCTGGTGGTTCCTTTGTCGTCGTCTCTAGAACTGCTGTATGTGCTTTCGGGAGTTTTCTGGTTATCGTACGTTGGAGCTTATAGCGAGATAAAGGGCTTAAAGCTCGATTAA
Protein
METLCRNSTHSSEVSKGLGRMFYLVNPQDSVFETQKEVPNFYVQSWPYFFTFLILEHIILKLQGKKGIRLNDGITSISNGLLLETGRLLWRGGEAYLYTWIYTNWRLLELPWDSTVTWLLAAVGVDFFYYWMHRACHEVHVLWAHHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYLPLALAIPPAQFLVHHQFSYLYMFWIHTETIKSLGPLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREEDRIVYGLIYQQPSFNPLHLQTYYTRYVMQKYKSFDSWKHKLQAVLDRPSWKPGNTIRFRDMEEDPAIHAQVKYNVILPKWCTAYLLTHYGLILYGFHQLFLYNSELPTTTVAILVLYIFASLIIFGMILDASPKAPFYEALRCLSLVLVVKLVVPLSSSLELLYVLSGVFWLSYVGAYSEIKGLKLD

Summary

Similarity
Belongs to the sterol desaturase family.
EMBL
BABH01011062    BABH01011063    BABH01011064    ODYU01001708    SOQ38286.1    AGBW02009122    + More
OWR51605.1    KQ458714    KPJ05470.1    GAIX01001986    JAA90574.1    KQ461002    KPJ10047.1    DS497675    EFA11751.1    GEDC01015428    GEDC01002534    JAS21870.1    JAS34764.1    NWSH01002571    PCG67954.1    KB632350    ERL93226.1    ACPB03000518    GBBI01000262    JAC18450.1    GECL01003048    JAP03076.1    GECU01034121    GECU01031029    GECU01011312    JAS73585.1    JAS76677.1    JAS96394.1    GEBQ01028354    JAT11623.1    GEBQ01009424    JAT30553.1    LJIG01016051    KRT81761.1    GECZ01029469    GECZ01025493    GECZ01018520    GECZ01017475    GECZ01015809    GECZ01013477    GECZ01009493    GECZ01004890    GECZ01004123    JAS40300.1    JAS44276.1    JAS51249.1    JAS52294.1    JAS53960.1    JAS56292.1    JAS60276.1    JAS64879.1    JAS65646.1    GDHC01011836    JAQ06793.1    GEZM01065669    GEZM01065661    JAV68382.1    KK854121    PTY11655.1    NEVH01000003    PNF44133.1    MF465856    AWU67707.1    ABLF02033072    GGMR01003613    MBY16232.1    KQ434813    KZC06790.1    LNIX01000007    OXA52052.1    KQ415041    KOC58869.1    GBYB01007205    GBYB01007208    JAG76972.1    JAG76975.1    GBYB01007204    JAG76971.1    LJIJ01000870    ODM94028.1    GDIP01200841    JAJ22561.1    GDIP01127549    JAL76165.1    KQ435775    KOX74952.1    GDIQ01185061    JAK66664.1    GDIQ01064014    JAN30723.1    GDIQ01163387    JAK88338.1    GDIQ01013255    JAN81482.1    QOIP01000008    RLU19663.1    KK113054    KFM59213.1    KK107126    EZA58443.1    KB203274    ESO85633.1    AYCK01013203    AYCK01013204    AYCK01013205    AYCK01013206    AYCK01013207    GBYX01461668    GBYX01461667    GBYX01461666    GBYX01461664    GBYX01461663    GBYX01461662    GBYX01461661    JAO19908.1    AKHW03005461    KYO26742.1    JH819141    EKC33710.1    GCES01068110    JAR18213.1    GCES01163908    GCES01163907    JAQ22415.1    JT414442    AHH40620.1    GBYX01461665    JAO19906.1    AGTP01054177    AGTP01054178    AGTP01054179    AGTP01054180    AGTP01054181    AGTP01054182    AGTP01054183    AGTP01054184    AGTP01054185    AGTP01054186    HAED01017483    SBR03928.1    HADZ01020660    SBP84601.1    HAEJ01007118    SBS47575.1    GL732554    EFX78959.1    HADY01005960    SBP44445.1    GG666606    EEN49863.1    JH430009    AERX01023963    NIVC01000352    PAA85010.1   
Pfam
PF04116   FA_hydroxylase
Interpro
IPR006694   Fatty_acid_hydroxylase       

Ontologies

Topology

Length:
444
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
115.12498
Exp number, first 60 AAs:
12.2798
Total prob of N-in:
0.66734
POSSIBLE N-term signal
sequence
inside
1  -  164
TMhelix
165  -  187
outside
188  -  338
TMhelix
339  -  361
inside
362  -  367
TMhelix
368  -  390
outside
391  -  409
TMhelix
410  -  432
inside
433  -  444
 
 

Population Genetic Test Statistics

Pi
262.812098
Theta
197.158031
Tajima's D
1.367768
CLR
0.225878
CSRT
0.753212339383031
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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