Gene

KWMTBOMO05311

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(+):13530708-13531296      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.524

CDS

ATGATCTATAAGACCATAATAAGGCCTGTTCTTATGTATGGCAGCGAAACATGGGCGGCAACCAAAAGGATCGTGCATACCATTCCAGTTGCTGAAATGAAAATGCTGAGGTGGATGTGCGGCGTGACTAGGCTCGATAGAATCCGCAACGAGTACGTGCGTGGAAGTCTAGGTGTACGGGACATCGCCGACAAGATGCAGGAGAGTAGGCTGAGATGGTATGGTCACGTGAAAAGGAAGCCACCTGACTACGTCGGAAATTTGGCGCTACTGCTCGACCTCCCCGGTCGGAGACCTAGAGGCAGACCCAAGACAAGGTGGAGGGACGTAGTGCTGAAGGACAAGAGAGAATGCAATGTTGCTGACGAAGATGTCGAAGACAGAGCGAAGTGGAGGAATAAAGTCAGGAATGCTGACCCCACCACCATGTGGGATAAATAG

Protein

MIYKTIIRPVLMYGSETWAATKRIVHTIPVAEMKMLRWMCGVTRLDRIRNEYVRGSLGVRDIADKMQESRLRWYGHVKRKPPDYVGNLALLLDLPGRRPRGRPKTRWRDVVLKDKRECNVADEDVEDRAKWRNKVRNADPTTMWDK

Uniprot

D7F169   C6Y4D5   A0A2G9U478   A0A183FT77   A0A3P8AAR6   A0A183GGD8   + More
A0A3P8D1Q5   A0A183G741   A0A3P8A7C9   A0A2G9UJN8   A0A3B3HQB6   H2MG20   A0A3P9JDN6   A0A3P9JAC7   A0A3B3H8Q9   A0A3B3HJS0   A0A3P9I3Z4   A0A3P9MAU2   A0A3P9K1J1   A0A2G9U8K0   A0A3P9IJG8   A0A3B3HF10   A0A183GFD9   A0A3P8CQ14   A0A016WHD5   A0A016TKX6   A0A3P9M3G7   W6NDS5   A0A016VX07   A0A3P9K727   A0A3B3HFD6   A0A3P9HQ45   A0A183GA74   A0A3P8F0W9   A0A016TSY7   A0A016TK27   A0A3B3HGK1   W6NHB7   A0A183F4B8   A0A3P7UF10   A0A183FDM4   A0A3P7XRG8   A0A3B3H692   A0A3B3HF03   A0A016SQS9   A0A016WUN5   A0A2I0BDY2   A0A3P9HCZ5   A0A3B3IFI4   A0A3P9IV37   A0A2I0BFB2   A0A2I0A7B2   A0A3B3I2L1   A0A3Q1JCX2   A0A3B3IFA0   A0A3P9H8X2   A0A3P9K097   A0A3P9MDZ4   A0A3B3ILR3   A0A3B3H6E8   A0A3B3IM16   A0A3Q1HIZ5   A0A3P9HH58   A0A3P9H8W7   A0A3B3HQ23   A0A3B3HUR5   A0A3B3HVS1   A0A3B3IP13   A0A3B3HQU7   A0A3B3HB27   A0A3B3HKV3   A0A3P9HVA4   A0A3B3HLA9   A0A3Q1K9G2   A0A3B3IM62   A0A3B3HLK3   A0A3B3IDD8   A0A3B3HTF4   A0A3B3ILX4   A0A3B3HXS2   A0A3P9H4S8   A0A3B3INX9   A0A3P9IG04   A0A3B3I061   A0A3P9JUV9   A0A3B3IA48   A0A3B3HLN6   A0A3P9JLZ1   A0A3B3IBX6   A0A3B3HYZ4   A0A3B3H9R1   A0A3B3HV05   A0A3P9J289   A0A3P9JZH0   A0A3B3HU59   A0A3B3HJ73   A0A3B3HK76   A0A3B3HE53   A0A3B3IC09   A0A3B3HGI6  

Pubmed

20470440    17554307    25730766    28902843   

EMBL

FJ265554    ADI61822.1    CU462842    CBA11992.1    KZ350014    PIO64310.1    + More
UZAH01027034    VDO87933.1    UZAH01033088    VDP26174.1    UZAH01030101    VDP09262.1    KZ346256    PIO70478.1    KZ348205    PIO66533.1    UZAH01032701    VDP23368.1    JARK01000281    EYC39011.1    JARK01001430    EYC03360.1    CAVP010058665    CDL95025.1    JARK01001340    EYC31308.1    UZAH01030983    VDP13266.1    JARK01001415    EYC05905.1    EYC03359.1    CAVP010061241    CDL96703.1    UZAH01000951    VDO19393.1    UZAH01025305    VDO60984.1    JARK01001524    EYB92930.1    JARK01000095    EYC43385.1    KZ451888    PKA66013.1    KZ451885    PKA66495.1    KZ452013    PKA51430.1   

Proteomes

UP000050761    UP000001038    UP000265200    UP000265180    UP000024635    UP000025227    + More
UP000236161    UP000265040   

PRIDE

D7F169   

Pfam

PF00078   RVT_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR001229   Jacalin-like_lectin_dom       
IPR036404   Jacalin-like_lectin_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF51101   SSF51101       

Gene 3D

3.60.10.10     2.100.10.30    

ProteinModelPortal

D7F169   C6Y4D5   A0A2G9U478   A0A183FT77   A0A3P8AAR6   A0A183GGD8   + More
A0A3P8D1Q5   A0A183G741   A0A3P8A7C9   A0A2G9UJN8   A0A3B3HQB6   H2MG20   A0A3P9JDN6   A0A3P9JAC7   A0A3B3H8Q9   A0A3B3HJS0   A0A3P9I3Z4   A0A3P9MAU2   A0A3P9K1J1   A0A2G9U8K0   A0A3P9IJG8   A0A3B3HF10   A0A183GFD9   A0A3P8CQ14   A0A016WHD5   A0A016TKX6   A0A3P9M3G7   W6NDS5   A0A016VX07   A0A3P9K727   A0A3B3HFD6   A0A3P9HQ45   A0A183GA74   A0A3P8F0W9   A0A016TSY7   A0A016TK27   A0A3B3HGK1   W6NHB7   A0A183F4B8   A0A3P7UF10   A0A183FDM4   A0A3P7XRG8   A0A3B3H692   A0A3B3HF03   A0A016SQS9   A0A016WUN5   A0A2I0BDY2   A0A3P9HCZ5   A0A3B3IFI4   A0A3P9IV37   A0A2I0BFB2   A0A2I0A7B2   A0A3B3I2L1   A0A3Q1JCX2   A0A3B3IFA0   A0A3P9H8X2   A0A3P9K097   A0A3P9MDZ4   A0A3B3ILR3   A0A3B3H6E8   A0A3B3IM16   A0A3Q1HIZ5   A0A3P9HH58   A0A3P9H8W7   A0A3B3HQ23   A0A3B3HUR5   A0A3B3HVS1   A0A3B3IP13   A0A3B3HQU7   A0A3B3HB27   A0A3B3HKV3   A0A3P9HVA4   A0A3B3HLA9   A0A3Q1K9G2   A0A3B3IM62   A0A3B3HLK3   A0A3B3IDD8   A0A3B3HTF4   A0A3B3ILX4   A0A3B3HXS2   A0A3P9H4S8   A0A3B3INX9   A0A3P9IG04   A0A3B3I061   A0A3P9JUV9   A0A3B3IA48   A0A3B3HLN6   A0A3P9JLZ1   A0A3B3IBX6   A0A3B3HYZ4   A0A3B3H9R1   A0A3B3HV05   A0A3P9J289   A0A3P9JZH0   A0A3B3HU59   A0A3B3HJ73   A0A3B3HK76   A0A3B3HE53   A0A3B3IC09   A0A3B3HGI6  

KEGG

105842995    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0004519   GO:0016740  

Length:

146

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0117

Exp number, first 60 AAs:

0.01156

Total prob of N-in:

0.31319

outside

1  -  146

 

 

Pi

307.871474

Theta

170.64806

Tajima's D

2.614427

CLR

0.331822

CSRT

0.954452277386131

Interpretation

Uncertain