Gene

KWMTBOMO05299  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002401

Annotation

geranylgeranyl_diphosphate_synthase_[Choristoneura_fumiferana]

Location

Bomo_Chr9(-):13300203-13315957      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.767 Nuclear   Reliability : 1.439

CDS

ATGTCGCAAGCTATCACAAGAAGTGGTGATAAAAATCAAGATGAGAAAATTCTCATGCCTTACACATACATTCAGCAAGTACCAGGGAAACAGATAAGAACGAAGCTAGCTTCCGCATTCAACTACTGGCTCAAGATATCTGAAGAGAAACTGAGACTAGTCGGTGATATTGTACAAATGCTACACAATGCCAGTTTATTGATCGACGACATTCAAGACAACAGCATCTTACGGCGCGGAATACCGGTAGCCCACTCCATCTATGGTGTCGCGAGCACCATCAACGCTGCGAACTATGCTATGATCATAGCCCTCGAGAAGACTTTGGAGCTTGGCCATCCATTGGCAACGACTGTATACACCGAACAGCTGTTGGAATTGCATCGAGGTCAGGGCATGGAGATTTACTGGCGGGACAACTTCCAGTGTCCCTCTGAAGACGAATACAAACAGATGACCATCAAAAAAACCGGTGGACTGTTCATGCTAGCGATACGACTGATGCAGTTGTTTAGCGAGAACAAATCGGACTTCACCAATCTGTCCGCCGTGTTGGGGCTGTATTTCCAGATCCGCGACGATTACTGCAACCTGTCGATGAGGGAGTACACAGAGAATAAGAGTTACTGCGAGGACCTCACGGAGGGGAAGTTCAGCTTCCCCATCATACACGCCATCAGGAGTCAGGAGGACGACAAACAAGTCCTTCATATCCTCCGCCAAAGGACACGGGACGTTGAAGTGAAACGTTACTGCATCACGTTGTTGGAGAAGTTGGGCAGCTTCCGGTACACGAGGGGGATCCTGAACGATCTGGACGCGCGCGCCAGGGAGGAGGTGTCCCGTCTAGGCGGCAACCCACAGCTGGAGGCGCTGCTGGACGACCTGCTCACCTGGAGACAGGAAGGCGACGACGCTAACGATCAAATGAACTACGTTTGA

Protein

MSQAITRSGDKNQDEKILMPYTYIQQVPGKQIRTKLASAFNYWLKISEEKLRLVGDIVQMLHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVYTEQLLELHRGQGMEIYWRDNFQCPSEDEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTENKSYCEDLTEGKFSFPIIHAIRSQEDDKQVLHILRQRTRDVEVKRYCITLLEKLGSFRYTRGILNDLDARAREEVSRLGGNPQLEALLDDLLTWRQEGDDANDQMNYV

Similarity

Belongs to the FPP/GGPP synthase family.

Uniprot

H9IYR7   U3RD44   A0A194QHL4   A0A2A4ITZ5   A0A2J7Q2Y4   A0A067QSW5   + More
A0A1B6KW37   A0A2M4BU81   W5JF06   A0A182FGR0   A0A3Q0IN35   A0A182JV36   A0A023F5X7   A0A182M6F1   A0A2M3ZBB2   A0A2M4AVI3   A0A182L3S9   Q7QII9   A0A182I6L5   A0A182WWD6   A0A182UP85   A0A1B6JNR0   A0A182UI28   A0A182ITN7   A0A084VDZ6   K7J553   A0A0K8TSQ4   T1DRU5   A0A1I8QCM2   A0A182QLX9   T1PDN7   A0A182PIN4   A0A182WBD9   A0A336LY31   A0A0L0CBX2   A0A2H8TZ27   A0A1W4UU58   A0A336LC35   B3MA53   B4KZW9   A0A2S2P6M8   B4LFC3   S5MIM6   Q9VS54   A0A3B0JVW8   A0A2S2QU44   B4HV52   B4QKD0   O61539   A0A182YSF5   B3NFE8   B4MLE5   B4PK63   Q29E71   B4HAU5   V5UVK1   A0A0K8W716   A0A034V9T5   A0A0A1XDF0   B4J366   A0A1B6DVR6   W8BQH9   A0A0K8T603   A0A182RJG1   J9JRD4   A0A1J1J494   A0A1A9XJG6   A0A1B0FBM4   A0A1A9UJ73   A0A1B0AY66   A0A1B0A6I9   A0A232FJ81   A0A1Q3G1Q3   A0A1I8QCS2   A0A1A9X0N2   A0A182N9F3   E0VT01   A0A2R7W8S3   A0A310SLK9   A0A2S2QDI4   A0A087ZYI3   A0A1I8QCM0   Q17BN5   A0A0M8ZS59   A0A1I8MZR8   A0A1W4UUF6   A0A0K8V540   A0A0Q9XBH3   A0A0P8XTD2   A0A026WU84   A0A2A3EBR8   A0A0Q9WID7   A0A0P4WTQ5   M9PEL3   A0A0J9RRX8   A0A0Q5U3A1   A0A0R3P957   A0A0R1DWE1   A0A0M4EKF8   A0A0K8VVX0  

Pubmed

19121390    23907071    26354079    24845553    20920257    23761445    + More
25474469    20966253    12364791    14747013    17210077    24438588    20075255    26369729    25315136    26108605    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    9426007    9611212    25244985    17550304    15632085    25348373    25830018    24495485    28648823    20566863    17510324    24508170   

EMBL

BABH01010965    BABH01010966    KF278817    AGW99945.1    KQ459220    KPJ02936.1    + More
NWSH01007678    PCG62868.1    NEVH01019075    PNF22944.1    KK853056    KDR11942.1    GEBQ01024337    JAT15640.1    GGFJ01007499    MBW56640.1    ADMH02001391    ETN62676.1    GBBI01002114    JAC16598.1    AXCM01010319    GGFM01005083    MBW25834.1    GGFK01011463    MBW44784.1    AAAB01008807    EAA03964.3    APCN01003668    GECU01006832    JAT00875.1    ATLV01011963    KE524742    KFB36190.1    AAZX01000345    GDAI01000199    JAI17404.1    GAMD01001784    JAA99806.1    AXCN02000560    KA646250    AFP60879.1    UFQS01000200    UFQT01000200    SSX01239.1    SSX21619.1    JRES01000611    KNC29893.1    GFXV01007760    MBW19565.1    UFQS01003214    UFQT01003214    SSX15368.1    SSX34739.1    CH902618    EDV39067.1    CH933809    EDW17981.1    GGMR01012455    MBY25074.1    CH940647    EDW69221.1    KF220654    AGR51169.1    AE014296    AY071599    AAF50574.1    AAL49221.1    ACZ94641.1    OUUW01000002    SPP77516.1    GGMS01012041    MBY81244.1    CH480817    EDW50823.1    CM000363    CM002912    EDX09553.1    KMY98068.1    AF049659    AAC05273.1    CH954178    EDV50490.1    CH963847    EDW73403.2    CM000159    EDW93743.1    CH379070    EAL30191.1    CH479244    EDW37727.1    KF680480    AHB81559.1    GDHF01005393    JAI46921.1    GAKP01018886    GAKP01018883    JAC40066.1    GBXI01005326    JAD08966.1    CH916366    EDV96137.1    GEDC01025287    GEDC01007569    JAS12011.1    JAS29729.1    GAMC01003070    JAC03486.1    GBRD01004852    JAG60969.1    ABLF02031117    CVRI01000067    CRL06794.1    CCAG010008960    JXJN01005555    NNAY01000117    OXU30804.1    GFDL01001310    JAV33735.1    DS235758    EEB16507.1    KK854469    PTY16122.1    KQ762449    OAD55868.1    GGMS01006593    MBY75796.1    CH477319    EAT43678.1    KQ435912    KOX68856.1    GDHF01018280    JAI34034.1    KRG05867.1    KPU77847.1    KK107119    EZA58644.1    KZ288297    PBC28914.1    KRF84243.1    GDRN01000188    JAI68010.1    AGB94205.1    KMY98069.1    KQS43323.1    KRT08710.1    KRK01333.1    CP012525    ALC43722.1    GDHF01009619    JAI42695.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000235965    UP000027135    UP000000673    + More
UP000069272    UP000079169    UP000075881    UP000075883    UP000075882    UP000007062    UP000075840    UP000076407    UP000075903    UP000075902    UP000075880    UP000030765    UP000002358    UP000095300    UP000075886    UP000095301    UP000075885    UP000075920    UP000037069    UP000192221    UP000007801    UP000009192    UP000008792    UP000000803    UP000268350    UP000001292    UP000000304    UP000076408    UP000008711    UP000007798    UP000002282    UP000001819    UP000008744    UP000001070    UP000075900    UP000007819    UP000183832    UP000092443    UP000092444    UP000078200    UP000092460    UP000092445    UP000215335    UP000091820    UP000075884    UP000009046    UP000005203    UP000008820    UP000053105    UP000053097    UP000242457    UP000092553   

PRIDE

H9IYR7    Q9VS54    O61539    M9PEL3   

Pfam

PF00348   polyprenyl_synt

Interpro

IPR033749   Polyprenyl_synt_CS        + More
IPR000092   Polyprenyl_synt       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR015919   Cadherin-like_sf       

SUPFAM

SSF48576   SSF48576        + More
SSF49313   SSF49313       

Gene 3D

1.10.600.10    

ProteinModelPortal

H9IYR7   U3RD44   A0A194QHL4   A0A2A4ITZ5   A0A2J7Q2Y4   A0A067QSW5   + More
A0A1B6KW37   A0A2M4BU81   W5JF06   A0A182FGR0   A0A3Q0IN35   A0A182JV36   A0A023F5X7   A0A182M6F1   A0A2M3ZBB2   A0A2M4AVI3   A0A182L3S9   Q7QII9   A0A182I6L5   A0A182WWD6   A0A182UP85   A0A1B6JNR0   A0A182UI28   A0A182ITN7   A0A084VDZ6   K7J553   A0A0K8TSQ4   T1DRU5   A0A1I8QCM2   A0A182QLX9   T1PDN7   A0A182PIN4   A0A182WBD9   A0A336LY31   A0A0L0CBX2   A0A2H8TZ27   A0A1W4UU58   A0A336LC35   B3MA53   B4KZW9   A0A2S2P6M8   B4LFC3   S5MIM6   Q9VS54   A0A3B0JVW8   A0A2S2QU44   B4HV52   B4QKD0   O61539   A0A182YSF5   B3NFE8   B4MLE5   B4PK63   Q29E71   B4HAU5   V5UVK1   A0A0K8W716   A0A034V9T5   A0A0A1XDF0   B4J366   A0A1B6DVR6   W8BQH9   A0A0K8T603   A0A182RJG1   J9JRD4   A0A1J1J494   A0A1A9XJG6   A0A1B0FBM4   A0A1A9UJ73   A0A1B0AY66   A0A1B0A6I9   A0A232FJ81   A0A1Q3G1Q3   A0A1I8QCS2   A0A1A9X0N2   A0A182N9F3   E0VT01   A0A2R7W8S3   A0A310SLK9   A0A2S2QDI4   A0A087ZYI3   A0A1I8QCM0   Q17BN5   A0A0M8ZS59   A0A1I8MZR8   A0A1W4UUF6   A0A0K8V540   A0A0Q9XBH3   A0A0P8XTD2   A0A026WU84   A0A2A3EBR8   A0A0Q9WID7   A0A0P4WTQ5   M9PEL3   A0A0J9RRX8   A0A0Q5U3A1   A0A0R3P957   A0A0R1DWE1   A0A0M4EKF8   A0A0K8VVX0  

PDB

2Q80     E-value=1.37236e-100,     Score=934

KEGG

101737879    K00804 geranylgeranyl diphosphate synthase, type III [EC:2.5.1.1 2.5.1.10 2.5.1.29] | (RefSeq) geran

PATHWAY

00900    Terpenoid backbone biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016740   GO:0008299   GO:0004311   GO:0035050   GO:0048477   GO:0008354   GO:0016021   GO:0005509   GO:0004161   GO:0051694   GO:0003824   GO:0000287   GO:0030955   GO:0016579   GO:0006511   GO:0005525   GO:0016491  

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.33697

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.23440

outside

1  -  313

 

 

Pi

171.039478

Theta

142.872696

Tajima's D

1.056019

CLR

0.164903

CSRT

0.67711614419279

Interpretation

Uncertain