Gene

KWMTBOMO05296

Annotation

PREDICTED:_tropomodulin_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr9(+):13263218-13274302      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.289

CDS

ATGACGACCCCGGCCAAATTGTACGGGCGGGAGTTGTCTACATACGACGAAGTGGACGTGGACGAGCTCCTGTCCAAGCTCACTCAAGAAGAACTGACCATGCTGGCAAAGGAGGTTGATCCTGACGACAATTTCCTTCCACCGTCACAGCGTAACAACTACGCTTGCGAGAAGGATCCCACCGGTCCGTTGAATCGCAAGAAACTGATAGAGCACATCAACAAGCAAGCACTGGAGACCCCCGACCGGCCCGAGGTCAAGCCTTTCGTCCCCGGCGTCGTCAGGGGCAAGAAGGTAAGGTATCAAACGCGACCAACGCAAAATTTTGATCTAGTTTCATAG

Protein

MTTPAKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNRKKLIEHINKQALETPDRPEVKPFVPGVVRGKKVRYQTRPTQNFDLVS

Uniprot

A0A2A4JG97   A0A194QBL0   A0A194QTS4   A0A212ET25   A0A1E1W4F9   A0A2H1VIY4   + More
A0A3S2LWV0   V5GSJ1   A0A0C9R0A8   A0A0C9QDB0   A0A2P8Z2B5   A0A139WKS9   Q173S8   A0A0C9RQN6   A0A1S4FFA2   A0A1B0DCL9   A0A0T6BB80   A0A2J7RE55   F5HJ17   A0A2M4AJM1   A0A023EQ62   A0A2J7RE60   A0A2J7RE59   A0A2M4CT47   A0A2M4BRR4   A0A2M3Z384   A0A1Q3FGE9   A0A2M3Z400   B0XBH8   A0A2M4AHN5   A0A2M3Z368   A0A1Q3FG66   A0A1Q3FY82   Q173S7   A0A2M4AQ64   A0A2M4AQ28   A0A1S4FFG0   A0A182TYA4   A0A182T5M7   A0A2M4BQY9   T1E7Y3   F5HJ20   F5HJ18   A0A2M4BQ75   Q7PFC9   A0A2M4BQQ3   A0A1L8E597   A0A182IDN9   E2BYX3   A0A182XNI0   A0A182VKH1   A0A182RH64   A0A182J7T5   A0A182FIG6   A0A182Y544   A0A084VN10   A0A2M4CMY5   A0A1L8E554   A0A182KFI1   A0A067RJU9   A0A158NB57   A0A182PPX3   A0A182M635   A0A182UEU7   A0A182MZW7   A0A1L8E5S3   W5JI16   A0A2M4CG80   A0A1L8E599   A0A1L8E550   A0A1L8E547   A0A0L7QTH0   E9J027   U5ERN1   V5JDH3   A0A139WL15   A0A182QSF8   A0A1B0GHE2   T1I7Q9   A0A1Y1JZA6   E2ARL7   A0A0P4VH38   A0A1Y1K3Y2   A0A0A1XNL3   A0A0A1XK71   A0A1Y1K0C5   A0A0J7L6J7   A0A069DTD0   A0A224XEM8   A0A195EWW9   A0A0K8VXG1   A0A0A9WA15   A0A0K8UZM7   A0A195BSR3   F4WXV5   A0A0A9YJP8   A0A0K8VAP3   A0A0A9YHG1   A0A151X0G5   A0A2H8TPN5  

Pubmed

26354079    22118469    29403074    18362917    19820115    17510324    + More
12364791    14747013    17210077    24945155    20798317    25244985    24438588    24845553    21347285    20920257    23761445    21282665    28004739    27129103    25830018    26334808    25401762    26823975    21719571   

EMBL

NWSH01001517    PCG71001.1    KQ459220    KPJ02933.1    KQ461154    KPJ08400.1    + More
AGBW02012663    OWR44629.1    GDQN01009188    JAT81866.1    ODYU01002805    SOQ40756.1    RSAL01000148    RVE45822.1    GALX01003894    JAB64572.1    GBYB01009549    JAG79316.1    GBYB01001269    JAG71036.1    PYGN01000229    PSN50637.1    KQ971326    KYB28516.1    CH477417    EAT41307.1    GBYB01009551    JAG79318.1    AJVK01030959    AJVK01030960    LJIG01002591    KRT84349.1    NEVH01005277    PNF39116.1    AAAB01008811    EGK96281.1    GGFK01007662    MBW40983.1    GAPW01001896    JAC11702.1    PNF39117.1    PNF39119.1    GGFL01004348    MBW68526.1    GGFJ01006609    MBW55750.1    GGFM01002230    MBW22981.1    GFDL01008418    JAV26627.1    GGFM01002498    MBW23249.1    DS232635    EDS44290.1    GGFK01006984    MBW40305.1    GGFM01002210    MBW22961.1    GFDL01008498    JAV26547.1    GFDL01002510    JAV32535.1    EAT41308.1    GGFK01009596    MBW42917.1    GGFK01009575    MBW42896.1    GGFJ01006366    MBW55507.1    GAMD01003238    JAA98352.1    EGK96279.1    EGK96278.1    EGK96280.1    GGFJ01006094    MBW55235.1    EAA45371.5    GGFJ01006162    MBW55303.1    GFDF01000211    JAV13873.1    GL451531    EFN79091.1    ATLV01014669    KE524978    KFB39354.1    GGFL01002508    MBW66686.1    GFDF01000214    JAV13870.1    KK852427    KDR24082.1    ADTU01010923    ADTU01010924    ADTU01010925    ADTU01010926    ADTU01010927    AXCM01008752    GFDF01000222    JAV13862.1    ADMH02001438    ETN62550.1    GGFL01000179    MBW64357.1    GFDF01000238    JAV13846.1    GFDF01000223    JAV13861.1    GFDF01000224    JAV13860.1    KQ414744    KOC61920.1    GL767291    EFZ13795.1    GANO01002736    JAB57135.1    KC122909    AGI96987.1    KYB28515.1    AXCN02002024    AJWK01004511    AJWK01004512    AJWK01004513    AJWK01004514    ACPB03005589    GEZM01099014    JAV53571.1    GL442153    EFN63925.1    GDKW01002879    JAI53716.1    GEZM01099020    JAV53567.1    GBXI01001827    JAD12465.1    GBXI01002528    JAD11764.1    GEZM01099017    JAV53570.1    LBMM01000460    KMQ98281.1    GBGD01001878    JAC87011.1    GFTR01005501    JAW10925.1    KQ981953    KYN32379.1    GDHF01008737    JAI43577.1    GBHO01040246    GBHO01014623    GBRD01002004    GDHC01019371    GDHC01009431    JAG03358.1    JAG28981.1    JAG63817.1    JAP99257.1    JAQ09198.1    GDHF01020187    JAI32127.1    KQ976417    KYM89708.1    GL888433    EGI60965.1    GBHO01014625    GBHO01013869    GBRD01001999    GDHC01003618    JAG28979.1    JAG29735.1    JAG63822.1    JAQ15011.1    GDHF01016412    JAI35902.1    GBHO01014624    GBHO01014622    GBRD01002002    JAG28980.1    JAG28982.1    JAG63819.1    KQ982622    KYQ53714.1    GFXV01004342    MBW16147.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000283053    UP000245037    + More
UP000007266    UP000008820    UP000092462    UP000235965    UP000007062    UP000002320    UP000075902    UP000075901    UP000008237    UP000076407    UP000075903    UP000075900    UP000075880    UP000069272    UP000076408    UP000030765    UP000075881    UP000027135    UP000005205    UP000075885    UP000075883    UP000075884    UP000000673    UP000053825    UP000075886    UP000092461    UP000015103    UP000000311    UP000036403    UP000078541    UP000078540    UP000007755    UP000075809   

Pfam

PF03250   Tropomodulin

Interpro

IPR004934   TMOD        + More
IPR030137   TMOD_invertebrate       
IPR032675   LRR_dom_sf       

Gene 3D

3.80.10.10    

ProteinModelPortal

A0A2A4JG97   A0A194QBL0   A0A194QTS4   A0A212ET25   A0A1E1W4F9   A0A2H1VIY4   + More
A0A3S2LWV0   V5GSJ1   A0A0C9R0A8   A0A0C9QDB0   A0A2P8Z2B5   A0A139WKS9   Q173S8   A0A0C9RQN6   A0A1S4FFA2   A0A1B0DCL9   A0A0T6BB80   A0A2J7RE55   F5HJ17   A0A2M4AJM1   A0A023EQ62   A0A2J7RE60   A0A2J7RE59   A0A2M4CT47   A0A2M4BRR4   A0A2M3Z384   A0A1Q3FGE9   A0A2M3Z400   B0XBH8   A0A2M4AHN5   A0A2M3Z368   A0A1Q3FG66   A0A1Q3FY82   Q173S7   A0A2M4AQ64   A0A2M4AQ28   A0A1S4FFG0   A0A182TYA4   A0A182T5M7   A0A2M4BQY9   T1E7Y3   F5HJ20   F5HJ18   A0A2M4BQ75   Q7PFC9   A0A2M4BQQ3   A0A1L8E597   A0A182IDN9   E2BYX3   A0A182XNI0   A0A182VKH1   A0A182RH64   A0A182J7T5   A0A182FIG6   A0A182Y544   A0A084VN10   A0A2M4CMY5   A0A1L8E554   A0A182KFI1   A0A067RJU9   A0A158NB57   A0A182PPX3   A0A182M635   A0A182UEU7   A0A182MZW7   A0A1L8E5S3   W5JI16   A0A2M4CG80   A0A1L8E599   A0A1L8E550   A0A1L8E547   A0A0L7QTH0   E9J027   U5ERN1   V5JDH3   A0A139WL15   A0A182QSF8   A0A1B0GHE2   T1I7Q9   A0A1Y1JZA6   E2ARL7   A0A0P4VH38   A0A1Y1K3Y2   A0A0A1XNL3   A0A0A1XK71   A0A1Y1K0C5   A0A0J7L6J7   A0A069DTD0   A0A224XEM8   A0A195EWW9   A0A0K8VXG1   A0A0A9WA15   A0A0K8UZM7   A0A195BSR3   F4WXV5   A0A0A9YJP8   A0A0K8VAP3   A0A0A9YHG1   A0A151X0G5   A0A2H8TPN5  

PDB

5WFN     E-value=0.00322438,     Score=89

KEGG

101737651    K10370 tropomodulin | (RefSeq) tropomodulin

GO

GO:0005523   GO:0051694   GO:0030016   GO:0030239   GO:0016021   GO:0003824   GO:0000287   GO:0030955   GO:0016579   GO:0006511   GO:0005525   GO:0016491  

PANTHER

PTHR10901   PTHR10901:SF6  

Length:

113

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.31962

outside

1  -  113

 

 

Pi

162.63762

Theta

163.27096

Tajima's D

0.127683

CLR

1.616073

CSRT

0.406229688515574

Interpretation

Uncertain