Gene

KWMTBOMO05270  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002413

Annotation

Contactin_[Operophtera_brumata]

Location

Bomo_Chr9(-):12451535-12455093      View in EpiBrowser

Full name

Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial       + More
Coronin      
Contactin      

Alternative Name

GTP-specific succinyl-CoA synthetase subunit beta
Succinyl-CoA synthetase beta-G chain

Location in the cell

Extracellular   Reliability : 1.119

CDS

ATGAAGTGTACGTTCCTTGTACTCGCAGTTGCGAGTTTGGTGAGGACCCAAGCACCTGAAAATGGTATCTATAATCAGAACTATCCGGAAGGAAACCAGAATAATACACAATATCGTCCCGGGCCCCAAATCCCTTACGGCAGTTTTCCCGTAAATAATGAATATCAACAGCCACCTCAAAGCTCTTTCTACCAGGACAGCCTCTACAACAGTGACAGCTATGCTGAAAATGAAAATGATGTCGAAAATACTGCGAGTGTATATGCTGGCTTAGATTACGAAGAGAAGTACCGATGTCCACCCAACTGGCTCCGCTACAAAGAGTCATGTTATCGGTTTACGAAGTCTCCTGATCGTCCTAGAAATGAAGCAAGAAAAATATGCCAAGCCTATGAAGCTGATTTAGTAGCCGTCAATAGCCCTGAAGAACATGGTTTTATAATAAACAATTTAATGAGGCTCGACCCTCAGAAGGGTTCATGGTATATAGGAGCTCACCAACAGTCTCCAGGTTATTGGTCCAATGATTATGATGGTTCACAGTTGACAGGTCTTGAGAATGCTTTCTTCGACGATCGACAATTTTCATTAAATAGTTATAATATATTTCCTAAAGATTTTTTGGTATACAAATTTTCACATCAAGATGGACGCTGGGGCTTAGCTGCTGTAGAAGGTACACAATATTATCACTTTATATGTGAGGGGCAAATGCAGCGTTTACATTATTTAATAGAAGAAGAAAGATCATTCACTTATGGCTTAGATACTTATGATCCAGAAAGGATTCCGAGAGGTCCATATTTTGTAAAACAGCCGGAAGATACTGTTTATGATCCTTTAAGAAATCATTATGTCCAACTTACTTGTATAGCAGGAGGATTTCCAGCTCCAACTTACAAATGGTTCGGAGAAGATTATCAAGTTGACAGTCCAGTTTACACAGAAATAGATCCTTTAGCTGACAGTAGGATTATATTAAGTGGAGGAACTTTAATGATTTATAACCCTGACAGTGAAAAGGATAATACAAAATATCACTGTACAGCTACAAACAAGTTTGGTACGATTAGATCAGAATCTGTCCGGTTGTCATTTGGATTCATAAGAGATTTCAATCAAAAGAGGCCAGTAGAAAGTGGAAATCAATACTGGGGTAAAGTAATGTATTGTGATCCTCCTTCGTACTATCCAGCTGTAAATATTCTGTGGGCTCGGAATTATTTCCCTAACCTTGTGGAAGAAGATAAACGTGTCTTTGTGTCATATGACGGTGGCCTCTATTTCTCAGCTTTAGAAACAATAGACCGAGGCAACTATAGTTGTAATGTAATGAGTAAAGTGTCTGATGAAGGCAGAAATGGTCCATTCTTTCCCTTACAGGTTTATCCGCATTCAGATTATCAGCAATTGAAATTCCCAAATAGCTTTCCTAAAGTATTTCCTGAAGCTCCAGTGGTTGGGCAAGAAGTCCGCCTGGAATGTGTCACATTTGGCTACCCAGTACCTTCTTATAATTGGACCAGACAGAATGGCCTTATACCTAAAAAAGCTCAATTGAGTAATTTTGACCGGGTTTTAACAATACCCAATGTAGGTGTAGAGGATGAAGGCGAATATATTTGTGATGTTCACAATGACAGAGCGAGGATATCAAATAGTGTGTATTTAAAAGTACAAGCTGAACCAAATTTTACAATTCCTCTTGGCGATAAACATATGGACAACAAAGGAGAATTACATTGGAACTGTGAGGCATTTGGGATACCAGATGTTAATTACACATGGTGGAAAAATGGTAAAAAACTAAAAAAAGATAATCTAGAACCACAGGACCGTGATAGGTACATTATTCAAGACAATGTTTTGATTATAAAATATTTAGACCCAACAAGAGATCCTGGAATGTACCAGTGTGAAGCAAAGAATCAATTGAAAGCTAGTTACTCGTCAGCGCAATTACGAGTGCTCTCTTTGAAACCATCATTTAAAAAACATCCTTTAGAATTGGAGACATACGGTTCTGAAGGTGGAAATGTGACATTAAAATGCAAACCAGAAGCTGCCCCAAAGCCAACATTCACTTGGAAAAAAGACAACATAGTTATTGGGGCAGGAGGAAAAAGATTCATTACCGAAAATGGGAATTTAATTATTAGACAACTTTCCAGAGATGATGAGGGCGTGTACACATGCGTCGCAAAGAATCAATACGGCACTGATGAGAGTAGAGGTCGTCTAATTGTCTTACGTGCACCACGTTTCCTTGAAAAACTCCCCCCTCGGATCACTGCACAAGTGAATTCAGTAGTTTTCTTGCACTGTAATGCCGATGTAGATCCTATTTTAGATACAGCGTATCTATGGAACCATAATGGCTTGCGGATTAAAGACTCATCAGATCTGTATGTCAACAAAAGAATAAAAATTGACGGTGGTGAGCTAACTATTTACAATGTAAGTCTTTCGGATGTGGGAGATTACGAATGTGTCGTTAAGTCCGCTATCGGAAGAATCTCTTCTCATGTGCAGCTGCGTATAGAGGGCCCGCCAGGTCCGCCGGGAGGCGTACAAATACTTGGCATACAGAGGTCTTCGGTGACCCTAGAGTGGACCGACAGTAACTCAAACGGTCGCCCTATAACTGGATACATGCTGACCGGACGCACCCACTGGAACTCAACTTGGTACGTGATCAGCGAGAATATACCCAACGTAATGGAAGTCGATAGATACAATGGGCGTAAACGAGCCACTGTTTCCACGACGCTTCTACCGTGGGCCATATATGAGTTTAGAATTCAAGCTATTAATATACTGGGTCCGGGGCAACCGTCCGCGCCGAGTCCGCAGTTCTCAACGTCGGGAGACAAGCCCTATGAGGCGCCCGCGAACGTTAGCGGCGGCGGCGGGAAGACCGGTGACCTCACAATCACGTGGACGCCCTTACCGACCTCCCTCCAAAACGGACCCGGCATACATTACAAAATATTCTGGCGCCGGAACGGCTCCGAAGTCGAATTTCAGTCCTTGCTTCTTAAGAAGTACGGAAACATCGGGACATACGTCGTGCACATATCTTCCACGTATTTCTACACGCCGTACGATGTCAAAGTACAAGCCTTCAACGATATAGGTCCCGGGCCAGAGAGCGAAGTAGTAACCATTTATTCGGCGGAGGACATGCCGCAGGTCGCGCCGCAGCTGGTCTCCGCGCGGTCCTTTAACTCCACAGCCCTGAACGTGACCTGGAACCCGATCGATCAGTCGCGCGAGAGGCTGCGCGGCAAGCTGATAGGCCACCGTCTCAAGTACTGGAAACAGGAGAACAAAGAAGAGGAGTGCATCTACTATTTGTCTCGAACGACTCGAAATTGGGCTCTTATAGTTGGTCTCCAGCCAGATACATATTATTATGTGAAGGTATAA

Protein

MKCTFLVLAVASLVRTQAPENGIYNQNYPEGNQNNTQYRPGPQIPYGSFPVNNEYQQPPQSSFYQDSLYNSDSYAENENDVENTASVYAGLDYEEKYRCPPNWLRYKESCYRFTKSPDRPRNEARKICQAYEADLVAVNSPEEHGFIINNLMRLDPQKGSWYIGAHQQSPGYWSNDYDGSQLTGLENAFFDDRQFSLNSYNIFPKDFLVYKFSHQDGRWGLAAVEGTQYYHFICEGQMQRLHYLIEEERSFTYGLDTYDPERIPRGPYFVKQPEDTVYDPLRNHYVQLTCIAGGFPAPTYKWFGEDYQVDSPVYTEIDPLADSRIILSGGTLMIYNPDSEKDNTKYHCTATNKFGTIRSESVRLSFGFIRDFNQKRPVESGNQYWGKVMYCDPPSYYPAVNILWARNYFPNLVEEDKRVFVSYDGGLYFSALETIDRGNYSCNVMSKVSDEGRNGPFFPLQVYPHSDYQQLKFPNSFPKVFPEAPVVGQEVRLECVTFGYPVPSYNWTRQNGLIPKKAQLSNFDRVLTIPNVGVEDEGEYICDVHNDRARISNSVYLKVQAEPNFTIPLGDKHMDNKGELHWNCEAFGIPDVNYTWWKNGKKLKKDNLEPQDRDRYIIQDNVLIIKYLDPTRDPGMYQCEAKNQLKASYSSAQLRVLSLKPSFKKHPLELETYGSEGGNVTLKCKPEAAPKPTFTWKKDNIVIGAGGKRFITENGNLIIRQLSRDDEGVYTCVAKNQYGTDESRGRLIVLRAPRFLEKLPPRITAQVNSVVFLHCNADVDPILDTAYLWNHNGLRIKDSSDLYVNKRIKIDGGELTIYNVSLSDVGDYECVVKSAIGRISSHVQLRIEGPPGPPGGVQILGIQRSSVTLEWTDSNSNGRPITGYMLTGRTHWNSTWYVISENIPNVMEVDRYNGRKRATVSTTLLPWAIYEFRIQAINILGPGQPSAPSPQFSTSGDKPYEAPANVSGGGGKTGDLTITWTPLPTSLQNGPGIHYKIFWRRNGSEVEFQSLLLKKYGNIGTYVVHISSTYFYTPYDVKVQAFNDIGPGPESEVVTIYSAEDMPQVAPQLVSARSFNSTALNVTWNPIDQSRERLRGKLIGHRLKYWKQENKEEECIYYLSRTTRNWALIVGLQPDTYYYVKV

Description

GTP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
Required for organization of septate junctions and paracellular barrier functions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion.

Catalytic Activity

CoA + GTP + succinate = GDP + phosphate + succinyl-CoA

Cofactor

Mg(2+)

Subunit

Heterodimer of an alpha and a beta subunit. The beta subunit determines specificity for GTP.
Forms a complex with Nrg and Nrx.

Similarity

Belongs to the succinate/malate CoA ligase beta subunit family. GTP-specific subunit beta subfamily.
Belongs to the WD repeat coronin family.
Belongs to the immunoglobulin superfamily. Contactin family.

Keywords

Cell adhesion   Cell junction   Cell membrane   Complete proteome   Disulfide bond   Glycoprotein   GPI-anchor   Immunoglobulin domain   Lipoprotein   Membrane   Reference proteome   Repeat   Signal  

Feature

chain  Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial
propeptide  Removed in mature form

Uniprot

A0A2H1VT68   A0A0L7LJS0   A0A2A4IXP8   B2DBK6   A0A194QBI6   A0A3S2LTD0   + More
A0A1B3IIF8   A0A1B6ENC1   A0A2J7QMK8   A0A1B6CPI8   A0A067R1K6   A0A0A9W5Z2   A0A0K8SZ50   A0A1Y1ME68   A0A1Y1MCY1   A0A195EU65   A0A026WIX4   A0A195B0J4   A0A154PRQ2   A0A158NQW5   A0A195CM68   A0A195E5P9   F4WP72   A0A087ZZ67   A0A2A3EGS0   A0A232EZ17   A0A151WM91   E0VHE2   A0A224X5J2   N6T8T5   E2BBG0   A0A0C9QB16   A0A2S2Q4I6   A0A2H8TTG8   A0A2S2NZ57   X1XBF9   A0A139WNP4   A0A0M9A8L9   A0A139WNQ0   A0A310SDU4   W4VRM9   A0A3Q0IPR7   A0A3Q0JHC2   A0A336LRD9   A0A034VYW9   A0A0L0BR94   A0A1D2MXX3   W8B851   C4IXZ0   B4I3N0   A0A0A1WYZ4   A0A1I8NGE1   Q9VN14   A0A1W4VLC8   B4NID8   A0A1J1HHK2   A0A0P5RFZ7   A0A0N8E3P1   A0A1I8QBD3   A0A0P5MYZ4   B4K8Y9   A0A0N8BPK1   A0A0P6G4L4   A0A0P6H0T8   A0A0P6G5D7   A0A0P5S5M2   A0A0P5P8J5   A0A0P5QYP0   A0A0P5MLA3   A0A0P5JZS8   A0A0P5R4J0   A0A0P6D687   A0A0P4ZQ78   A0A1S4FFB1   A0A3B0KEU5   A0A0N8BQQ1   Q174B0   B4PTR6   A0A3B0JRG3   A0A0P4YSM5   B3LY10   A0A1A9VDP7   A0A0P5VNF0   A0A1A9ZSV6   A0A1A9Y0J0   A0A1B0B2Y9   A0A1Q3FZ93   A0A1A9W5Q7   A0A1Q3FZ63   B4LWB1   A0A0M4ER32   A0A0Q9WRK6   A0A0N8E7Q9   A0A182H4T2   A0A0P6I6T4   Q295F4   B4GDY8   A0A0P6CHJ2   B4JY64   A0A182H854  

EC Number

6.2.1.4

Pubmed

26227816    18712529    26354079    27535920    24845553    25401762    + More
26823975    28004739    24508170    30249741    21347285    21719571    28648823    20566863    23537049    20798317    18362917    19820115    25348373    26108605    27289101    24495485    17994087    25830018    25315136    15459097    10731132    12537572    12537569    17893096    19349973    18057021    17510324    17550304    26483478    15632085   

EMBL

ODYU01004126    SOQ43672.1    JTDY01000914    KOB75456.1    NWSH01005469    PCG64178.1    + More
AB264690    BAG30765.1    KQ459220    KPJ02908.1    RSAL01000222    RVE44025.1    KU840799    AOF39986.1    GECZ01030373    JAS39396.1    NEVH01013208    PNF29807.1    GEDC01022085    JAS15213.1    KK852812    KDR15864.1    GBHO01043325    GBHO01043324    GBHO01043323    GBHO01043322    GBHO01043321    GBHO01043320    GBHO01043319    GBHO01043318    GBHO01043317    GBHO01026697    GBHO01026696    GDHC01011104    GDHC01009280    JAG00279.1    JAG00280.1    JAG00281.1    JAG00282.1    JAG00283.1    JAG00284.1    JAG00285.1    JAG00286.1    JAG00287.1    JAG16907.1    JAG16908.1    JAQ07525.1    JAQ09349.1    GBRD01007631    JAG58190.1    GEZM01037123    JAV82156.1    GEZM01037124    JAV82155.1    KQ981965    KYN31788.1    KK107182    QOIP01000003    EZA55992.1    RLU25075.1    KQ976691    KYM77981.1    KQ435031    KZC14024.1    ADTU01023676    KQ977574    KYN01826.1    KQ979608    KYN20411.1    GL888243    EGI64003.1    KZ288262    PBC30356.1    NNAY01001615    OXU23418.1    KQ982944    KYQ48953.1    DS235169    EEB12798.1    GFTR01008680    JAW07746.1    APGK01047078    KB741077    KB632384    ENN74113.1    ERL94243.1    GL447043    EFN86967.1    GBYB01000424    GBYB01002675    JAG70191.1    JAG72442.1    GGMS01003433    MBY72636.1    GFXV01005738    MBW17543.1    GGMR01009836    MBY22455.1    ABLF02031408    KQ971307    KYB29620.1    KQ435711    KOX79460.1    KYB29619.1    KQ767242    OAD53473.1    GANO01001293    JAB58578.1    UFQS01000048    UFQT01000048    SSW98581.1    SSX18967.1    GAKP01011867    GAKP01011863    JAC47085.1    JRES01001482    KNC22536.1    LJIJ01000398    ODM97899.1    GAMC01011748    JAB94807.1    BT083421    ACQ91625.1    CH480821    EDW54823.1    GBXI01010562    JAD03730.1    AY229991    AE014297    BT021333    AY095040    CH964272    EDW83720.1    KRF99863.1    CVRI01000004    CRK87512.1    GDIQ01211082    GDIQ01169650    GDIQ01151413    GDIQ01120620    GDIQ01064939    GDIQ01064938    GDIQ01061732    GDIQ01030315    JAL31106.1    GDIQ01064940    GDIQ01047604    JAN29797.1    GDIQ01157452    JAK94273.1    CH933806    EDW16586.1    GDIQ01157451    JAK94274.1    GDIQ01038407    JAN56330.1    GDIQ01038408    JAN56329.1    GDIQ01211084    GDIQ01151362    GDIQ01049110    JAN45627.1    GDIQ01092632    JAL59094.1    GDIQ01138361    JAL13365.1    GDIQ01107968    JAL43758.1    GDIQ01154253    JAK97472.1    GDIQ01192945    JAK58780.1    GDIQ01105629    JAL46097.1    GDIQ01090178    JAN04559.1    GDIP01213910    JAJ09492.1    OUUW01000007    SPP83581.1    GDIQ01154251    JAK97474.1    CH477414    EAT41415.1    CM000160    EDW95649.1    SPP83583.1    GDIP01225061    JAI98340.1    CH902617    EDV42866.1    KPU79964.1    GDIP01097684    JAM06031.1    JXJN01007739    GFDL01002192    JAV32853.1    GFDL01002190    JAV32855.1    CH940650    EDW67645.2    CP012526    ALC46897.1    KRF83380.1    GDIQ01053596    JAN41141.1    JXUM01025782    KQ560733    KXJ81095.1    GDIQ01015848    JAN78889.1    CM000070    EAL28758.1    CH479182    EDW34649.1    GDIP01015021    JAM88694.1    CH916377    EDV90626.1    JXUM01028746    JXUM01028747    KQ560831    KXJ80691.1   

Proteomes

UP000037510    UP000218220    UP000053268    UP000283053    UP000235965    UP000027135    + More
UP000078541    UP000053097    UP000279307    UP000078540    UP000076502    UP000005205    UP000078542    UP000078492    UP000007755    UP000005203    UP000242457    UP000215335    UP000075809    UP000009046    UP000019118    UP000030742    UP000008237    UP000007819    UP000007266    UP000053105    UP000079169    UP000037069    UP000094527    UP000001292    UP000095301    UP000000803    UP000192221    UP000007798    UP000183832    UP000095300    UP000009192    UP000268350    UP000008820    UP000002282    UP000007801    UP000078200    UP000092445    UP000092443    UP000092460    UP000091820    UP000008792    UP000092553    UP000069940    UP000249989    UP000001819    UP000008744    UP000001070   

PRIDE

C4IXZ0    Q9VN14   

Pfam

PF12796   Ank_2        + More
PF00041   fn3
PF07679   I-set
PF05473   UL45
PF00171   Aldedh
PF00549   Ligase_CoA
PF08442   ATP-grasp_2
PF12894   ANAPC4_WD40
PF08953   DUF1899
PF00400   WD40
PF00059   Lectin_C
PF13895   Ig_2
PF00047   ig

Interpro

IPR036770   Ankyrin_rpt-contain_sf        + More
IPR013098   Ig_I-set       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR020683   Ankyrin_rpt-contain_dom       
IPR016187   CTDL_fold       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR036116   FN3_sf       
IPR001304   C-type_lectin-like       
IPR002110   Ankyrin_rpt       
IPR003961   FN3_dom       
IPR016186   C-type_lectin-like/link_sf       
IPR007110   Ig-like_dom       
IPR008646   Herpes_UL45-like       
IPR016162   Ald_DH_N       
IPR010061   MeMal-semiAld_DH       
IPR015590   Aldehyde_DH_dom       
IPR016163   Ald_DH_C       
IPR016160   Ald_DH_CS_CYS       
IPR016161   Ald_DH/histidinol_DH       
IPR034722   Succ_CoA_betaG_euk       
IPR013815   ATP_grasp_subdomain_1       
IPR017866   Succ-CoA_synthase_bsu_CS       
IPR005809   Succ_CoA_synthase_bsu       
IPR013650   ATP-grasp_succ-CoA_synth-type       
IPR005811   CoA_ligase       
IPR016102   Succinyl-CoA_synth-like       
IPR003529   Hematopoietin_rcpt_Gp130_CS       
IPR017986   WD40_repeat_dom       
IPR024977   Apc4_WD40_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR015048   DUF1899       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR027331   CORO7       
IPR015505   Coronin       
IPR013151   Immunoglobulin       

SUPFAM

SSF48403   SSF48403        + More
SSF48726   SSF48726       
SSF56436   SSF56436       
SSF49265   SSF49265       
SSF53720   SSF53720       
SSF52210   SSF52210       
SSF50978   SSF50978       

Gene 3D

1.25.40.20     2.60.40.10     3.10.100.10     3.40.309.10     3.40.605.10     3.30.1490.20     3.40.50.261     2.130.10.10    

CDD

cd00063  FN3
cd00204  ANK
cd07085  ALDH_F6_MMSDH

ProteinModelPortal

A0A2H1VT68   A0A0L7LJS0   A0A2A4IXP8   B2DBK6   A0A194QBI6   A0A3S2LTD0   + More
A0A1B3IIF8   A0A1B6ENC1   A0A2J7QMK8   A0A1B6CPI8   A0A067R1K6   A0A0A9W5Z2   A0A0K8SZ50   A0A1Y1ME68   A0A1Y1MCY1   A0A195EU65   A0A026WIX4   A0A195B0J4   A0A154PRQ2   A0A158NQW5   A0A195CM68   A0A195E5P9   F4WP72   A0A087ZZ67   A0A2A3EGS0   A0A232EZ17   A0A151WM91   E0VHE2   A0A224X5J2   N6T8T5   E2BBG0   A0A0C9QB16   A0A2S2Q4I6   A0A2H8TTG8   A0A2S2NZ57   X1XBF9   A0A139WNP4   A0A0M9A8L9   A0A139WNQ0   A0A310SDU4   W4VRM9   A0A3Q0IPR7   A0A3Q0JHC2   A0A336LRD9   A0A034VYW9   A0A0L0BR94   A0A1D2MXX3   W8B851   C4IXZ0   B4I3N0   A0A0A1WYZ4   A0A1I8NGE1   Q9VN14   A0A1W4VLC8   B4NID8   A0A1J1HHK2   A0A0P5RFZ7   A0A0N8E3P1   A0A1I8QBD3   A0A0P5MYZ4   B4K8Y9   A0A0N8BPK1   A0A0P6G4L4   A0A0P6H0T8   A0A0P6G5D7   A0A0P5S5M2   A0A0P5P8J5   A0A0P5QYP0   A0A0P5MLA3   A0A0P5JZS8   A0A0P5R4J0   A0A0P6D687   A0A0P4ZQ78   A0A1S4FFB1   A0A3B0KEU5   A0A0N8BQQ1   Q174B0   B4PTR6   A0A3B0JRG3   A0A0P4YSM5   B3LY10   A0A1A9VDP7   A0A0P5VNF0   A0A1A9ZSV6   A0A1A9Y0J0   A0A1B0B2Y9   A0A1Q3FZ93   A0A1A9W5Q7   A0A1Q3FZ63   B4LWB1   A0A0M4ER32   A0A0Q9WRK6   A0A0N8E7Q9   A0A182H4T2   A0A0P6I6T4   Q295F4   B4GDY8   A0A0P6CHJ2   B4JY64   A0A182H854  

PDB

5I99     E-value=3.47949e-59,     Score=583

KEGG

101747138    no KO assigned | (RefSeq) contactin

GO

GO:0016021   GO:0004491   GO:0006099   GO:0005525   GO:0006104   GO:0005524   GO:0000287   GO:0005739   GO:0004776   GO:0004775   GO:0016020   GO:0004896   GO:0005794   GO:0003824   GO:0019991   GO:0061343   GO:0021682   GO:0008366   GO:0060857   GO:0005918   GO:0031225   GO:0045197   GO:0005886   GO:0005515   GO:0004222   GO:0006508   GO:0003677   GO:0003887   GO:0001664   GO:0016491  

PANTHER

PTHR43866   PTHR10856:SF20   PTHR10856  

Subcellular location

Mitochondrion  
Cell membrane  
Cell junction  
Septate junction  

SignalP

Position:   1 - 16,         Likelihood:  0.994938

 

 

Length:

1142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01393

Exp number, first 60 AAs:

0.00134

Total prob of N-in:

0.00008

outside

1  -  1142

 

 

Pi

202.330612

Theta

183.265772

Tajima's D

0.270979

CLR

0.087149

CSRT

0.451127443627819

Interpretation

Uncertain