Gene

KWMTBOMO05267

Pre Gene Modal

BGIBMGA012813

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(+):12374594-12378602      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.674

CDS

ATGTTGATTAAATTAGAAGCCAAACCATTTAACATCAACATTGTCCAAGTTTATGCGCCTACAGGGGATAAACCAATGGGCCAGATAGAGGACTTATATAGGGCTATTGATAGCTTATTAAAATCTACTAAGAATCACGAGTTAGTTATCGTTATGGGTGACATGAATGCGAAGGTGGGTTCGACCATTACTCCTGGAGTGACTGGTGCTTATGGCCTTGGAAACAGAAACGATAGAGATCATAACCCAGTGGTGGTAGACGTAGCATGCAAGCTGAAGAAGTTGCAGCCAAAGAGAATGGATGGAAGGCCAAACGTACGGAAGCTTGCTGAGCCCGACACACGAGCGAAGACCCACACCGCTATTAATCAATGGGCCAACGATCGTCGCACTGAAACCACTGCCTCTGACCTCGACACGTGGACTAGTCTAAAGCGAAGTGTAAAAGATATATGTCACCAATACCTCCAACCATCACAACTGGTCAAAAAACAAGATTGGATGACAGATTCAATTTTGCAGCTTATGGAAGACAGGAGGCAATTTAAGGGTACAAATCCAGTAATGTATAAGCAAATCGATGTCACCATTCGAAAAGAGATTGCGAAAGCCAAGAATGATTACTACCGCAATAAGTGCGCGCACTTGGAAGATCTCCTTCGTAAACATGACAGCTTCAATGCGCACAAGCACATCAAGGAAATGGTTGGTCATAGACGGAAATCAATGAATACTCTGACCGATGCAGGTGGGAACCTCATTCTTGACACCGATGGCAAAAAGAGAGTGTGGTGTGACTATGTTGCAGAGATGTTTGCGGACTCATCGAGGAACATTTCACCGATCACTGATCGGACTGGTCCAGCTATGTTGCGATCTGAGGTTTTGCGGGCCTTGAAAGCTGCTAAAACAGGTAAATCACCGGGTCCTGATAATATACCGATCGAAATACTAAAGTTGCTGGAAGAAGATCAACTGGACGTTCTCACACAGTTCTTCAACAACATCTACGAAACAGGCAATCTTCCTAGTGACTGGCTAAAATCCACATTCATTACGATACCCAAGAAGCAAAATGCCAAAAAATGTGGAGAGTATCGTATGATTAGTCTGATGAGCCATGTCCTAAAAGTATTCTTGAACATCATACAGAATAGAATACGGCCAAAATGTGATGAACAACTGGGCGATAGCCAATTTGGATTTCGATCTGGTGTTGGCACCAGAGAAGCTCTTTTCGCTCTCAACGTTCTCGTACAGAAATGCAGAGACATGCAAACTGATGTCTTTTTGTGCTTCATAGACTACGAAAAGGCATTTGACCGAGTTAAACATCATCAACTTTTTAGCCTTTTATGTGACATTGGTCTAGATGGTAAGGACGTCAGAATCATCCGCAACCTGTACGAGAAGCAGGTGGCTACGATAAGAGTCGAAAATGAGGAAACCGACCAAGTTGAGATCTGTCGTGGGGTCCGGCAGGGAAGCACGAAGGATCGGAATTTTCCTGTTAAGAAACAAAAGCGTACTCGCTTCGGTGTGAAAAGCAGGGAGATTCTGGCCCAAATTGTTTCGTAG

Protein

MLIKLEAKPFNINIVQVYAPTGDKPMGQIEDLYRAIDSLLKSTKNHELVIVMGDMNAKVGSTITPGVTGAYGLGNRNDRDHNPVVVDVACKLKKLQPKRMDGRPNVRKLAEPDTRAKTHTAINQWANDRRTETTASDLDTWTSLKRSVKDICHQYLQPSQLVKKQDWMTDSILQLMEDRRQFKGTNPVMYKQIDVTIRKEIAKAKNDYYRNKCAHLEDLLRKHDSFNAHKHIKEMVGHRRKSMNTLTDAGGNLILDTDGKKRVWCDYVAEMFADSSRNISPITDRTGPAMLRSEVLRALKAAKTGKSPGPDNIPIEILKLLEEDQLDVLTQFFNNIYETGNLPSDWLKSTFITIPKKQNAKKCGEYRMISLMSHVLKVFLNIIQNRIRPKCDEQLGDSQFGFRSGVGTREALFALNVLVQKCRDMQTDVFLCFIDYEKAFDRVKHHQLFSLLCDIGLDGKDVRIIRNLYEKQVATIRVENEETDQVEICRGVRQGSTKDRNFPVKKQKRTRFGVKSREILAQIVS

Uniprot

D5LB38   A0A2A4JBK9   A0A3S1C192   A0A2V9X8L4   A0A0B7BU85   A0A0B7BRW7   + More
A0A0B7BTM4   A0A0B7BU90   A0A0B7BR36   A0A0B7BRV7   A0A1W7RAL1   A0A076N1B6   A0A085NA39   A0A023GD30   A0A0B1PP52   A0A2J7QCR1   A0A2A4JXP9   A0A2J7PCW0   A0A2J7PWT0   A0A2J7RE76   A0A2J7QPT5   A0A076N3Z4   A0A2J7PMY4   A0A2J7QLQ1   A0A2S2PMS6   A0A2J7PHX9   A0A2J7Q6F7   A0A2J7R7D2   A0A2J7PTB8   A0A2J7Q7C6   A0A2J7PFC5   A0A2J7PBF1   A0A2J7PSI0   A0A2J7RL19   A0A2J7PC89   A0A2J7Q6P7   A0A2J7QCG2   A0A2J7PSH5   A0A2J7Q6T5   A0A2J7Q3K9   A0A2J7QNQ3   A0A2J7RJY3   A0A2J7R8P5   A0A2J7QI56   A0A2J7PNH4   A0A2J7RRE4   A0A2J7QMC5   A0A2J7PZN7   A0A2J7PT27   A0A2J7RBL1   A0A2J7PF68   A0A2J7RPX5   A0A2J7RBL5   A0A2J7Q649   A0A2J7QSZ5   A0A2J7QUD0   A0A2J7R8G1   A0A2J7RNM5   A0A2J7QJJ9   A0A146LUY8   A0A2J7QEJ0   A0A2J7PTY0   A0A2J7R901   A0A2J7RIL8   A0A2J7QR01   A0A2J7PW81   H3ABE5   A0A2J7PQA3   A0A2J7REE7   A0A2J7PVW0   A0A2J7RLI7   A0A2J7PX03   A0A2J7RP47   A0A2J7PMJ3   A0A2J7RGX2   A0A2J7QGX8   A0A2J7R639   A0A2J7Q0C6   A0A2J7QGT4   A0A2J7QH51  

Pubmed

20470440    24929829    26823975    9215903   

EMBL

GU815089    ADF18552.1    NWSH01001998    PCG69477.1    RQTK01000404    RUS80216.1    + More
QIAP01000240    PYX61602.1    HACG01048870    CEK95735.1    HACG01048883    CEK95748.1    HACG01048876    CEK95741.1    HACG01048875    CEK95740.1    HACG01048879    CEK95744.1    HACG01048873    CEK95738.1    GFAH01000222    JAV48167.1    KF881087    AIJ27486.1    KL367526    KFD66335.1    GBBM01003639    JAC31779.1    KN538403    KHJ42451.1    NEVH01016127    PNF26367.1    NWSH01000469    PCG76200.1    NEVH01026403    PNF14170.1    NEVH01020868    PNF20797.1    NEVH01005277    PNF39130.1    NEVH01012087    PNF30599.1    KF881086    AIJ27485.1    NEVH01023960    PNF17698.1    NEVH01013243    PNF29503.1    GGMR01018096    MBY30715.1    NEVH01025130    PNF15934.1    NEVH01017478    PNF24170.1    NEVH01006734    PNF36732.1    NEVH01021610    PNF19569.1    NEVH01017443    PNF24485.1    NEVH01025668    PNF15041.1    NEVH01027104    PNF13657.1    NEVH01021928    PNF19298.1    NEVH01002700    PNF41535.1    NEVH01027067    PNF13944.1    NEVH01017460    PNF24248.1    NEVH01016289    PNF26277.1    NEVH01021931    PNF19256.1    NEVH01017452    PNF24293.1    NEVH01019066    PNF23173.1    NEVH01012564    PNF30212.1    NEVH01002982    PNF41147.1    NEVH01006721    PNF37211.1    NEVH01013959    PNF28275.1    NEVH01023953    PNF17877.1    NEVH01000609    PNF43402.1    NEVH01013215    PNF29703.1    NEVH01020333    PNF21790.1    NEVH01021921    PNF19488.1    NEVH01005896    PNF38208.1    NEVH01026085    PNF14968.1    NEVH01020851    NEVH01013954    NEVH01006574    NEVH01001358    NEVH01001354    PNF21237.1    PNF28332.1    PNF37782.1    PNF42792.1    PNF42884.1    PNF38212.1    NEVH01017540    PNF24056.1    NEVH01011205    PNF31711.1    NEVH01011186    PNF32183.1    NEVH01016335    PNF25462.1    PNF37115.1    NEVH01002150    PNF42436.1    NEVH01013553    PNF28765.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    NEVH01015309    PNF27009.1    NEVH01021219    PNF19787.1    PNF37310.1    NEVH01003500    PNF40666.1    NEVH01012082    PNF31006.1    NEVH01020937    PNF20581.1    AFYH01236276    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    PNF39212.1    NEVH01020940    PNF20478.1    NEVH01002684    PNF41704.1    NEVH01020865    PNF20863.1    NEVH01002141    PNF42599.1    NEVH01023985    PNF17546.1    NEVH01003750    PNF40091.1    NEVH01014359    PNF27813.1    NEVH01006981    PNF36299.1    NEVH01019971    PNF22037.1    PNF27789.1    NEVH01014358    PNF27914.1   

Proteomes

UP000218220    UP000271974    UP000247801    UP000235965    UP000008672   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4JBK9   A0A3S1C192   A0A2V9X8L4   A0A0B7BU85   A0A0B7BRW7   + More
A0A0B7BTM4   A0A0B7BU90   A0A0B7BR36   A0A0B7BRV7   A0A1W7RAL1   A0A076N1B6   A0A085NA39   A0A023GD30   A0A0B1PP52   A0A2J7QCR1   A0A2A4JXP9   A0A2J7PCW0   A0A2J7PWT0   A0A2J7RE76   A0A2J7QPT5   A0A076N3Z4   A0A2J7PMY4   A0A2J7QLQ1   A0A2S2PMS6   A0A2J7PHX9   A0A2J7Q6F7   A0A2J7R7D2   A0A2J7PTB8   A0A2J7Q7C6   A0A2J7PFC5   A0A2J7PBF1   A0A2J7PSI0   A0A2J7RL19   A0A2J7PC89   A0A2J7Q6P7   A0A2J7QCG2   A0A2J7PSH5   A0A2J7Q6T5   A0A2J7Q3K9   A0A2J7QNQ3   A0A2J7RJY3   A0A2J7R8P5   A0A2J7QI56   A0A2J7PNH4   A0A2J7RRE4   A0A2J7QMC5   A0A2J7PZN7   A0A2J7PT27   A0A2J7RBL1   A0A2J7PF68   A0A2J7RPX5   A0A2J7RBL5   A0A2J7Q649   A0A2J7QSZ5   A0A2J7QUD0   A0A2J7R8G1   A0A2J7RNM5   A0A2J7QJJ9   A0A146LUY8   A0A2J7QEJ0   A0A2J7PTY0   A0A2J7R901   A0A2J7RIL8   A0A2J7QR01   A0A2J7PW81   H3ABE5   A0A2J7PQA3   A0A2J7REE7   A0A2J7PVW0   A0A2J7RLI7   A0A2J7PX03   A0A2J7RP47   A0A2J7PMJ3   A0A2J7RGX2   A0A2J7QGX8   A0A2J7R639   A0A2J7Q0C6   A0A2J7QGT4   A0A2J7QH51  

PDB

6AR3     E-value=0.00917949,     Score=93

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0006355  

PANTHER

PTHR23227  

Length:

525

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00797

Exp number, first 60 AAs:

0.00065

Total prob of N-in:

0.00049

outside

1  -  525

 

 

Pi

329.724445

Theta

218.01055

Tajima's D

1.683661

CLR

0.095983

CSRT

0.825808709564522

Interpretation

Uncertain